Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 2.0e-89 332.4 168 100.0
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 2.2e-88 328.9 168 98.8
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 1.6e-83 312.8 163 96.9
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 3.6e-83 311.6 163 96.3
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 1.4e-82 309.7 174 90.8
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 1.8e-82 309.3 161 96.9
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 7.4e-76 287.3 173 85.0
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 1.4e-74 283.1 161 88.2
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 1.8e-74 282.7 167 85.0
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 2.0e-73 279.3 172 83.1
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 2.6e-73 278.9 160 86.9
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 2.6e-73 278.9 160 86.9
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 2.6e-73 278.9 160 86.9
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 2.6e-73 278.9 160 86.9
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 5.8e-73 277.7 172 82.6
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 1.1e-71 273.5 166 83.1
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 3.2e-71 271.9 154 86.4
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 9.3e-71 270.4 168 81.0
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 6.0e-70 267.7 156 85.3
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 7.6e-65 250.8 150 76.7
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 1.9e-63 246.1 162 74.1
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 6.1e-62 241.1 165 70.3
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 1.8e-61 239.6 163 69.3
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 3.0e-61 238.8 168 67.9
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 3.9e-61 238.4 147 74.8
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 8.7e-61 237.3 157 70.1
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 8.7e-61 237.3 151 72.2
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 8.7e-61 237.3 166 66.3
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 8.7e-61 237.3 152 73.7
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 1.1e-60 236.9 201 63.7
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 1.9e-60 236.1 153 71.2
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 2.5e-60 235.7 148 70.3
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 2.5e-60 235.7 160 68.8
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 2.5e-60 235.7 150 74.0
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 4.3e-60 235.0 137 77.4
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 5.7e-60 234.6 149 71.1
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 7.4e-60 234.2 161 68.3
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 7.4e-60 234.2 143 74.1
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 7.4e-60 234.2 153 70.6
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 9.7e-60 233.8 160 68.1
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 9.7e-60 233.8 160 68.1
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 1.3e-59 233.4 147 72.1
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 1.3e-59 233.4 154 70.8
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 1.6e-59 233.0 150 72.0
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 1.6e-59 233.0 150 72.7
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 2.2e-59 232.6 138 76.1
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 2.2e-59 232.6 147 72.8
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 2.2e-59 232.6 159 70.4
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 2.8e-59 232.3 150 71.3
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 2.8e-59 232.3 137 74.5
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 2.8e-59 232.3 154 68.8
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 3.7e-59 231.9 156 68.6
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 4.8e-59 231.5 152 69.7
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 4.8e-59 231.5 173 65.3
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 4.8e-59 231.5 151 70.2
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 4.8e-59 231.5 135 74.8
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 6.3e-59 231.1 165 67.9
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 8.2e-59 230.7 156 68.6
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 8.2e-59 230.7 156 68.6
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 1.1e-58 230.3 163 65.0
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 1.1e-58 230.3 153 68.0
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 1.4e-58 229.9 161 67.1
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 1.4e-58 229.9 152 71.1
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 1.4e-58 229.9 152 71.1
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 1.4e-58 229.9 164 65.2
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 1.8e-58 229.6 149 69.8
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 1.8e-58 229.6 150 68.7
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 2.4e-58 229.2 152 71.1
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 2.4e-58 229.2 131 78.6
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 2.4e-58 229.2 137 73.0
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 2.4e-58 229.2 152 69.7
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 2.4e-58 229.2 165 66.1
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 4.1e-58 228.4 173 64.7
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 4.1e-58 228.4 154 68.2
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 4.1e-58 228.4 163 65.0
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 6.9e-58 227.6 155 68.4
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 9.0e-58 227.3 139 74.1
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 1.2e-57 226.9 155 70.3
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 1.5e-57 226.5 165 64.2
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 2.6e-57 225.7 152 67.8
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 2.6e-57 225.7 151 66.2
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 2.6e-57 225.7 134 75.4
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 2.6e-57 225.7 153 67.3
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 4.5e-57 224.9 152 67.8
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 4.5e-57 224.9 159 67.3
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 4.5e-57 224.9 153 68.6
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 5.9e-57 224.6 150 69.3
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 5.9e-57 224.6 150 69.3
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 7.7e-57 224.2 154 66.2
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 7.7e-57 224.2 153 66.0
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.0e-56 223.8 159 66.7
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.0e-56 223.8 159 66.7
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 1.0e-56 223.8 168 64.3
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 1.3e-56 223.4 141 71.6
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 2.2e-56 222.6 158 67.7
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 1.9e-55 219.5 160 61.9
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 2.5e-55 219.2 160 61.9
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 3.2e-55 218.8 160 73.8
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 4.2e-55 218.4 152 68.4
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 2.7e-54 215.7 148 65.5
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 6.1e-54 214.5 157 65.6
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 7.9e-54 214.2 150 66.7
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 1.4e-53 213.4 148 63.5
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 5.1e-53 211.5 153 64.7
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 1.1e-52 210.3 149 64.4
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 1.1e-52 210.3 143 65.7
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 2.0e-52 209.5 146 66.4
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 8.2e-51 204.1 163 58.9
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.1e-50 202.2 211 51.2
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 4.1e-50 201.8 156 61.5
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 9.1e-50 200.7 206 51.0
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 9.1e-50 200.7 121 77.7
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.5e-49 199.9 206 51.5
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 2.0e-41 172.9 126 60.3
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 1.3e-40 170.2 104 75.0
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 1.7e-40 169.9 138 61.6
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 3.8e-40 168.7 137 54.7
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 1.9e-39 166.4 97 75.3
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 9.4e-31 137.5 84 72.6
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-22 109.4 83 60.2
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 1.7e-19 100.1 72 63.9
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 1.1e-15 87.4 151 33.1
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 2.0e-12 76.6 134 33.6
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 7.5e-12 74.7 76 47.4
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 6.2e-06 55.1 57 49.1


User provided reference genes

Program Settings