Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 2.6e-220 768.5 408 100.0
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 1.6e-209 732.6 408 96.6
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 3.7e-206 721.5 408 95.8
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 5.9e-204 714.1 408 95.1
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 8.9e-184 647.1 408 88.0
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 1.6e-153 546.6 472 69.7
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 3.5e-148 528.9 473 69.1
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 6.0e-148 528.1 469 67.8
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 6.0e-148 528.1 479 68.7
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 3.0e-147 525.8 473 68.1
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 4.3e-146 521.9 456 70.4
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 9.4e-125 451.1 473 61.9
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 3.8e-102 375.9 487 54.4
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 6.5e-102 375.2 471 56.7
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 3.2e-101 372.9 502 52.4
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 6.1e-100 368.6 495 54.5
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 1.5e-98 364.0 465 55.9
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 2.0e-98 363.6 467 55.7
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 9.7e-98 361.3 480 55.0
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 3.7e-97 359.4 489 53.4
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 3.5e-95 352.8 505 52.1
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 3.2e-93 346.3 449 55.0
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 3.2e-93 346.3 501 50.3
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 3.0e-83 313.2 441 51.5
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 1.3e-81 307.8 432 51.2
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 2.8e-81 306.6 462 48.3
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 1.1e-80 304.7 429 51.7
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 5.4e-80 302.4 432 51.2
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 7.0e-80 302.0 432 50.9
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 4.5e-79 299.3 440 50.2
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 1.1e-77 294.7 432 50.0
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 2.3e-75 287.0 486 45.3
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 9.8e-74 281.6 478 45.0
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 5.1e-22 109.8 337 32.6
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 2.1e-20 104.4 377 28.1
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 8.2e-20 102.4 377 27.6
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 3.1e-19 100.5 203 36.5
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 4.1e-19 100.1 278 32.0
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 2.6e-18 97.4 313 31.3
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 6.5e-17 92.8 308 30.5
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 3.2e-16 90.5 261 33.7
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 7.1e-16 89.4 250 29.6
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 9.3e-16 89.0 391 27.1
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 1.0e-14 85.5 413 27.1
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 3.0e-14 84.0 247 31.2
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 8.7e-14 82.4 309 31.7
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 3.3e-13 80.5 225 32.4
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 2.8e-12 77.4 400 26.0
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 1.4e-11 75.1 274 28.8
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 1.4e-11 75.1 310 29.0
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 4.1e-11 73.6 311 28.9
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 1.7e-09 68.2 447 25.3
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 1.7e-09 68.2 228 32.0
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 2.5e-08 64.3 314 25.8
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 3.6e-07 60.5 199 31.2
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 1.4e-06 58.5 99 41.4
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 2.3e-06 57.8 352 27.3
ECA233G5141 Erigeron canadensis HOM05D008213 ORTHO05D009787 8.8e-06 55.8 266 25.6


User provided reference genes

Program Settings