Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 2.4e-263 911.8 497 100.0
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 1.9e-252 875.5 497 97.0
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 1.5e-233 812.8 500 90.8
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 3.3e-233 811.6 500 90.8
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 5.9e-222 774.2 500 84.6
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 3.8e-221 771.5 500 81.4
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 3.8e-221 771.5 500 81.4
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 2.3e-218 762.3 504 81.9
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 5.1e-218 761.1 500 85.0
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 1.5e-217 759.6 504 82.3
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 3.7e-216 755.0 500 81.6
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 2.6e-214 748.8 504 79.2
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 7.7e-214 747.3 500 84.0
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 1.5e-209 733.0 500 79.2
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 1.7e-208 729.6 504 76.6
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 3.5e-206 721.8 444 83.1
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 2.3e-202 709.1 444 82.2
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 4.4e-185 651.7 501 69.5
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 4.1e-183 645.2 500 70.2
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 3.5e-182 642.1 464 77.4
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.5e-148 530.4 490 57.1
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 9.6e-148 527.7 497 57.1
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 9.6e-148 527.7 491 58.9
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.6e-147 526.9 492 56.7
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 1.4e-146 523.9 505 56.8
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 6.9e-146 521.5 504 57.1
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 5.8e-145 518.5 434 61.8
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 9.9e-145 517.7 508 55.7
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.9e-144 516.2 498 55.8
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 6.4e-144 515.0 494 56.7
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.9e-143 513.5 506 54.2
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 2.4e-143 513.1 498 54.2
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 4.2e-143 512.3 504 55.6
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 4.2e-143 512.3 500 57.2
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 4.2e-143 512.3 484 57.2
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 5.4e-143 511.9 503 55.1
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 7.1e-143 511.5 500 55.4
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 9.3e-143 511.1 509 54.0
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 1.6e-142 510.4 510 55.3
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 3.5e-142 509.2 498 54.8
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 4.6e-142 508.8 522 53.6
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 2.3e-141 506.5 504 54.6
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 3.0e-141 506.1 497 55.9
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 3.0e-141 506.1 445 59.8
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.0e-141 506.1 445 59.8
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.0e-141 506.1 507 55.2
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 3.9e-141 505.8 497 55.3
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 6.6e-141 505.0 489 55.4
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 6.6e-141 505.0 496 56.0
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.3e-140 502.7 507 54.8
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 3.3e-140 502.7 500 55.6
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 4.3e-140 502.3 448 58.0
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 1.3e-139 500.7 497 53.9
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.3e-139 500.7 481 55.7
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 1.6e-139 500.4 503 55.3
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 4.8e-139 498.8 497 53.9
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 1.1e-138 497.7 501 53.1
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 1.8e-138 496.9 498 55.0
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 3.1e-138 496.1 435 58.9
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 4.0e-138 495.7 489 54.2
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 5.3e-138 495.4 501 54.9
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 1.2e-137 494.2 479 53.7
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 4.5e-137 492.3 506 53.2
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 1.3e-136 490.7 499 53.5
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 1.3e-136 490.7 506 53.2
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 1.3e-136 490.7 501 53.1
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.7e-136 490.3 489 53.6
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.9e-136 488.8 435 57.9
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 4.9e-136 488.8 511 52.3
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.4e-135 487.3 492 53.3
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 1.9e-135 486.9 504 52.2
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 2.4e-135 486.5 495 52.5
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.4e-135 486.5 502 54.4
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 4.2e-135 485.7 481 56.1
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 1.2e-134 484.2 420 58.6
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 2.1e-134 483.4 507 52.1
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 2.3e-133 479.9 603 46.8
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 3.9e-133 479.2 514 52.1
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 3.9e-133 479.2 440 57.5
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.9e-133 479.2 505 53.1
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 5.1e-133 478.8 502 52.6
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 8.7e-133 478.0 460 55.9
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 8.7e-133 478.0 508 53.9
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.9e-132 476.9 447 56.6
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 4.3e-132 475.7 438 55.7
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 7.4e-132 474.9 435 57.0
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 2.8e-131 473.0 441 57.1
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 8.1e-131 471.5 445 54.8
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 1.1e-130 471.1 499 53.9
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 1.4e-130 470.7 471 53.1
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 1.8e-130 470.3 462 54.1
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.8e-130 470.3 492 51.6
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.1e-130 469.5 505 51.9
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 1.2e-129 467.6 446 55.8
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 3.2e-127 459.5 506 50.4
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 4.2e-127 459.1 492 53.5
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 4.6e-126 455.7 451 52.1
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 1.8e-125 453.8 459 52.5
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 2.3e-125 453.4 458 57.0
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 1.9e-124 450.3 452 54.0
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 9.6e-124 448.0 449 53.9
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 2.1e-123 446.8 507 48.1
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 8.2e-123 444.9 506 50.2
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 1.5e-121 440.7 512 48.2
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 2.9e-120 436.4 439 53.5
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 2.7e-118 429.9 497 49.9
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 1.6e-115 420.6 478 49.4
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 5.9e-113 412.1 497 48.9
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 1.7e-112 410.6 432 52.5
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 4.2e-111 406.0 375 56.5
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 5.5e-111 405.6 443 51.0
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 1.6e-110 404.1 462 49.4
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 1.8e-109 400.6 446 50.7
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 4.5e-105 386.0 311 61.1
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.4e-103 380.9 423 50.1
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 2.6e-100 370.2 402 51.0
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.7e-100 369.0 485 46.6
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 1.7e-96 357.5 383 53.3
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 1.0e-93 348.2 484 42.1
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 3.0e-93 346.7 334 53.9
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 9.7e-92 341.7 421 48.2
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 4.8e-91 339.3 312 56.4
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 4.8e-91 339.3 498 42.2
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.5e-87 327.8 395 48.6
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.4e-85 321.2 396 47.2
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 3.7e-83 313.2 306 54.9
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 2.4e-82 310.5 522 38.5
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 9.1e-82 308.5 415 43.1
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 3.3e-71 273.5 253 54.5
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 5.6e-71 272.7 314 46.5
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 3.4e-68 263.5 292 48.6
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 5.9e-65 252.7 484 34.3
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 7.3e-63 245.7 193 64.8
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 1.6e-62 244.6 190 63.7
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.9e-59 233.0 306 46.1
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 4.6e-57 226.5 245 52.2
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 1.1e-47 195.3 132 69.7
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 2.6e-44 184.1 187 54.5
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 3.3e-39 167.2 451 28.8
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 4.3e-39 166.8 310 33.2
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 2.1e-33 147.9 84 81.0
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 5.6e-31 139.8 145 55.9
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 1.8e-29 134.8 193 39.4
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-23 115.2 66 78.8
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 1.5e-23 115.2 73 72.6
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 7.4e-23 112.8 73 71.2
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.6e-22 111.7 78 62.8
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 1.8e-21 108.2 80 61.2
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 9.6e-15 85.9 125 46.4
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 2.1e-14 84.7 140 38.6
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 4.8e-14 83.6 46 80.4
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 5.3e-13 80.1 67 58.2
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 5.5e-10 70.1 57 61.4
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 1.0e-08 65.9 178 28.7
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 1.6e-06 58.5 107 35.5
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 3.7e-06 57.4 106 34.9


User provided reference genes

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