Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 2.0e-112 409.1 203 100.0
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 4.8e-106 387.9 202 95.0
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 1.4e-105 386.3 202 94.6
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 5.4e-105 384.4 201 94.5
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 5.7e-99 364.4 188 94.7
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 5.5e-94 347.8 177 95.5
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 1.2e-93 346.7 174 96.6
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 2.8e-93 345.5 168 100.0
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 2.8e-93 345.5 174 96.0
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 4.7e-93 344.7 175 95.4
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 3.0e-92 342.0 174 94.8
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 1.2e-91 340.1 174 94.3
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 2.6e-91 339.0 174 94.8
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 4.4e-91 338.2 174 94.3
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 7.5e-91 337.4 174 93.7
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.1e-89 333.6 173 93.1
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 5.9e-88 327.8 174 89.1
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 8.0e-85 317.4 174 88.5
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 2.6e-83 312.4 174 87.4
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 7.5e-83 310.8 174 86.8
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 1.7e-82 309.7 174 84.5
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 1.7e-82 309.7 174 86.8
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 1.7e-82 309.7 174 86.8
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 2.2e-82 309.3 174 86.8
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 4.9e-82 308.1 174 85.6
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 6.4e-82 307.8 174 86.2
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 6.4e-82 307.8 174 85.6
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 8.3e-82 307.4 173 86.1
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 1.4e-81 306.6 174 85.6
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 1.4e-81 306.6 174 85.1
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 1.9e-81 306.2 174 84.5
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.9e-81 306.2 174 84.5
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.9e-81 306.2 174 84.5
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 1.9e-81 306.2 174 84.5
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 2.4e-81 305.8 174 85.1
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 2.4e-81 305.8 174 83.9
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 3.2e-81 305.4 174 84.5
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 3.2e-81 305.4 173 85.0
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 4.1e-81 305.1 174 83.9
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 4.1e-81 305.1 173 86.1
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 5.4e-81 304.7 175 88.0
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 5.4e-81 304.7 174 85.1
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 5.4e-81 304.7 174 83.9
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 7.0e-81 304.3 174 85.1
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 9.2e-81 303.9 172 86.0
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 9.2e-81 303.9 174 83.9
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 9.2e-81 303.9 174 83.9
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 9.2e-81 303.9 174 83.9
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 9.2e-81 303.9 174 83.3
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 9.2e-81 303.9 174 83.3
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 9.2e-81 303.9 174 83.9
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 1.2e-80 303.5 174 82.2
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 1.2e-80 303.5 174 86.2
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 1.2e-80 303.5 174 86.2
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 1.6e-80 303.1 174 83.3
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 1.6e-80 303.1 173 83.8
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 1.6e-80 303.1 174 83.9
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 1.6e-80 303.1 174 83.9
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 1.6e-80 303.1 174 83.3
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 2.0e-80 302.8 174 83.9
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.0e-80 302.8 174 83.3
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 2.0e-80 302.8 174 82.2
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 2.0e-80 302.8 173 86.7
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 2.7e-80 302.4 173 83.8
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 2.7e-80 302.4 174 83.9
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 2.7e-80 302.4 174 82.8
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 3.5e-80 302.0 174 83.9
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 4.6e-80 301.6 174 82.8
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 4.6e-80 301.6 174 82.8
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 4.6e-80 301.6 174 82.2
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 6.0e-80 301.2 174 83.3
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 6.0e-80 301.2 174 83.9
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 1.0e-79 300.4 174 82.2
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.0e-79 300.4 174 82.2
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 1.3e-79 300.1 174 82.2
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.3e-79 300.1 169 86.4
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 1.7e-79 299.7 174 82.8
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.3e-79 299.3 173 83.2
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 3.0e-79 298.9 174 82.2
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 3.0e-79 298.9 174 83.3
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 3.0e-79 298.9 174 82.8
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 5.0e-79 298.1 173 83.2
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 8.6e-79 297.4 174 81.6
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.1e-78 297.0 174 80.5
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 1.9e-78 296.2 186 79.6
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 1.2e-77 293.5 152 94.1
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 1.2e-77 293.5 187 77.5
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 1.6e-77 293.1 175 80.0
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 4.7e-77 291.6 175 79.4
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 4.7e-77 291.6 191 75.4
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 6.2e-77 291.2 175 79.4
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 1.2e-75 287.0 174 81.6
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 1.2e-75 287.0 174 79.9
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 7.5e-75 284.3 193 73.6
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 2.9e-74 282.3 173 82.1
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 4.1e-73 278.5 203 70.9
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.0e-71 273.9 152 88.8
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 4.7e-69 265.0 174 77.0
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 3.1e-68 262.3 147 82.3
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 4.0e-68 261.9 154 84.4
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 2.6e-67 259.2 152 80.9
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 5.8e-67 258.1 151 84.8
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 8.4e-66 254.2 144 81.9
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.1e-65 253.8 174 73.0
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 1.6e-64 250.0 173 71.1
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 2.1e-64 249.6 174 70.7
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 2.8e-61 239.2 176 70.5
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 2.9e-58 229.2 193 64.8
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 6.4e-58 228.0 125 85.6
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 6.0e-56 221.5 121 84.3
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 7.8e-56 221.1 125 81.6
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.3e-53 213.8 176 58.5
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 3.1e-52 209.1 163 60.1
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 2.6e-51 206.1 155 67.1
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 1.1e-49 200.7 174 54.0
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 3.6e-45 185.7 100 86.0
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.4e-44 183.0 100 84.0
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 3.1e-44 182.6 100 85.0
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 2.6e-43 179.5 100 83.0
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 5.8e-43 178.3 87 96.6
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.7e-42 176.8 100 82.0
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 1.8e-39 166.8 95 82.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 2.5e-38 162.9 176 54.0
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 1.3e-37 160.6 153 57.5
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 6.2e-37 158.3 89 78.7
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.0e-35 153.3 86 81.4
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 6.5e-34 148.3 87 79.3
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 3.9e-31 139.0 125 56.8
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 1.0e-26 124.4 66 84.8
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.2e-25 119.4 87 67.8
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 1.6e-24 117.1 79 69.6
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 1.9e-22 110.2 77 75.3
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.7e-19 98.2 67 74.6
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 3.6e-16 89.4 48 83.3
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 6.9e-12 75.1 193 26.9
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 1.5e-11 73.9 47 66.0
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.5e-11 73.9 192 29.2
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 2.0e-11 73.6 49 75.5
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 7.7e-11 71.6 202 27.2
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.6e-08 63.9 174 27.0
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 2.0e-06 57.0 137 29.9


User provided reference genes

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