Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 3.3e-118 428.3 209 100.0
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 6.5e-106 387.5 210 93.3
BcaC07g38513 Brassica carinata HOM05D003268 ORTHO05D003719 8.6e-74 280.8 197 76.6
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 3.1e-71 272.3 201 72.6
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 6.8e-71 271.2 201 72.6
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 6.0e-67 258.1 206 66.0
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 1.5e-65 253.4 199 67.8
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.9e-65 253.1 197 68.0
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 2.8e-64 249.2 194 66.0
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 1.4e-63 246.9 199 66.8
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 1.4e-63 246.9 199 66.8
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 5.2e-63 245.0 206 63.1
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 5.2e-63 245.0 196 67.3
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 5.2e-63 245.0 196 67.3
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 5.2e-63 245.0 206 63.1
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 1.5e-62 243.4 176 71.6
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 2.0e-62 243.0 194 65.5
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 4.1e-60 235.3 207 63.8
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 2.7e-59 232.6 209 65.6
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 5.1e-58 228.4 211 60.2
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 3.3e-57 225.7 205 63.9
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 4.9e-53 211.8 154 67.5
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 6.0e-51 204.9 202 54.0
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 1.2e-48 197.2 200 55.0
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 2.4e-47 193.0 197 52.3
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 7.1e-44 181.4 194 50.5
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 4.8e-40 168.7 124 65.3
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.0e-34 151.0 211 45.0
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 2.3e-34 149.8 181 48.6
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 3.9e-34 149.1 171 48.0
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 9.6e-33 144.4 186 47.8
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 1.4e-31 140.6 196 44.9
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 3.1e-31 139.4 195 43.1
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 9.0e-31 137.9 191 44.5
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 1.7e-29 133.7 204 42.2
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.9e-28 130.2 191 43.5
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.9e-28 130.2 191 43.5
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 4.2e-28 129.0 226 38.9
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 5.4e-28 128.6 191 42.9
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 5.4e-28 128.6 191 42.9
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 1.2e-27 127.5 222 39.2
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 2.7e-27 126.3 189 42.3
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 3.5e-27 125.9 189 42.3
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.0e-26 124.4 193 42.0
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 1.8e-26 123.6 160 44.4
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 2.3e-26 123.2 176 42.6
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 6.7e-26 121.7 185 42.2
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 6.7e-26 121.7 187 39.6
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 1.1e-25 120.9 167 43.7
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 4.3e-25 119.0 202 37.6
BcaC07g41877 Brassica carinata HOM05D003268 ORTHO05D003719 9.6e-25 117.9 193 44.6
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 1.3e-24 117.5 165 42.4
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 1.6e-24 117.1 178 39.9
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.8e-24 116.3 167 40.1
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 6.2e-24 115.2 167 40.7
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 8.1e-24 114.8 200 38.5
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 8.1e-24 114.8 170 40.6
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 8.1e-24 114.8 191 38.2
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 1.1e-23 114.4 170 40.0
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.1e-23 114.4 193 38.9
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.8e-23 113.6 154 42.9
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 2.4e-23 113.2 202 36.6
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 3.1e-23 112.8 207 37.7
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 3.1e-23 112.8 207 37.7
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 5.3e-23 112.1 179 38.5
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 9.0e-23 111.3 201 36.3
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 1.5e-22 110.5 191 37.7
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 1.5e-22 110.5 189 36.0
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 2.0e-22 110.2 184 37.0
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 2.0e-22 110.2 185 37.3
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 2.6e-22 109.8 173 38.7
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 3.4e-22 109.4 181 35.9
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 3.4e-22 109.4 218 34.4
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 4.5e-22 109.0 186 38.2
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 1.0e-21 107.8 177 38.4
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 1.3e-21 107.5 191 35.6
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 1.3e-21 107.5 188 35.6
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 1.7e-21 107.1 160 41.2
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 2.2e-21 106.7 181 37.0
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 2.2e-21 106.7 184 37.0
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 3.8e-21 105.9 184 35.9
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 3.8e-21 105.9 186 37.1
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 6.5e-21 105.1 178 36.5
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 6.5e-21 105.1 175 38.9
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 8.4e-21 104.8 166 39.8
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 1.4e-20 104.0 168 39.9
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.9e-20 103.6 190 36.3
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 1.9e-20 103.6 190 36.3
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 2.5e-20 103.2 172 39.5
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 2.5e-20 103.2 175 36.0
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 2.5e-20 103.2 166 42.8
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.5e-20 103.2 178 38.8
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 2.5e-20 103.2 188 33.0
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 2.5e-20 103.2 181 37.6
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 3.2e-20 102.8 194 36.6
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 3.2e-20 102.8 194 36.6
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 3.2e-20 102.8 191 36.6
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 5.5e-20 102.1 191 37.2
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.2e-19 100.9 194 36.1
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.2e-19 100.9 179 39.1
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 1.6e-19 100.5 184 35.9
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 2.1e-19 100.1 183 35.0
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 2.1e-19 100.1 173 35.8
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.1e-19 100.1 190 36.3
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 2.7e-19 99.8 179 37.4
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 2.7e-19 99.8 199 36.2
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 4.6e-19 99.0 186 35.5
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 7.9e-19 98.2 186 36.0
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 1.3e-18 97.4 173 35.8
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 2.3e-18 96.7 206 33.0
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 3.9e-18 95.9 163 36.8
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 5.1e-18 95.5 184 34.2
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 5.1e-18 95.5 198 32.3
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 8.7e-18 94.7 188 34.6
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.5e-17 94.0 164 36.6
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 2.5e-17 93.2 169 37.9
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 2.5e-17 93.2 187 31.6
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 2.5e-17 93.2 183 33.3
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 2.5e-17 93.2 176 34.7
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 3.3e-17 92.8 175 34.9
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 5.7e-17 92.0 164 38.4
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 1.3e-16 90.9 188 32.4
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 1.6e-16 90.5 142 38.7
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 2.1e-16 90.1 187 36.4
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 2.1e-16 90.1 171 34.5
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 2.8e-16 89.7 172 32.6
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 2.8e-16 89.7 173 34.1
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 3.7e-16 89.4 177 34.5
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 4.8e-16 89.0 197 33.5
Aa31LG1G5600 Aethionema arabicum HOM05D003268 ORTHO05D003719 6.2e-16 88.6 137 39.4
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 8.2e-16 88.2 189 31.7
BolC8t48924H Brassica oleracea HOM05D048168 ORTHO05D041204 1.1e-15 87.8 55 87.3
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 1.1e-15 87.8 174 33.3
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.1e-15 87.8 176 33.0
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.4e-15 87.4 170 36.5
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 1.4e-15 87.4 181 34.8
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 1.8e-15 87.0 162 32.7
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 1.8e-15 87.0 164 34.1
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.8e-15 87.0 171 32.7
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 3.1e-15 86.3 175 35.4
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 5.3e-15 85.5 182 32.4
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 5.3e-15 85.5 177 35.6
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.0e-14 83.6 178 34.8
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 4.5e-14 82.4 201 29.9
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 4.5e-14 82.4 174 33.9
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 4.5e-14 82.4 204 32.8
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 4.5e-14 82.4 174 32.2
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 5.8e-14 82.0 172 30.8
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.0e-13 81.3 155 33.5
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 1.3e-13 80.9 145 36.6
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 1.7e-13 80.5 193 31.6
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 1.7e-13 80.5 147 38.1
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 1.7e-13 80.5 147 38.1
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 1.7e-13 80.5 179 32.4
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 1.7e-13 80.5 168 32.1
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.2e-13 80.1 155 32.3
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 8.4e-13 78.2 171 31.6
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 8.4e-13 78.2 164 30.5
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.1e-12 77.8 196 30.6
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 2.5e-12 76.6 159 30.2
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 2.5e-12 76.6 159 30.2
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 4.2e-12 75.9 180 32.8
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 5.5e-12 75.5 149 37.6
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 5.5e-12 75.5 84 44.0
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 1.2e-11 74.3 169 32.0
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.2e-11 74.3 159 30.2
Actinidia17741 Actinidia chinensis HOM05D003268 ORTHO05D003719 2.2e-08 63.5 102 40.2
HanXRQChr07g0197201 Helianthus annuus HOM05D003268 ORTHO05D003719 6.3e-08 62.0 160 27.5
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 1.4e-07 60.8 187 26.2
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 1.4e-07 60.8 95 34.7
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 2.4e-07 60.1 190 27.4


User provided reference genes

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