Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 6.1e-186 654.1 340 100.0
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 2.2e-183 645.6 340 98.2
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 9.1e-166 587.0 341 90.0
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 3.8e-164 581.6 342 88.9
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 3.8e-164 581.6 342 88.9
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 4.7e-138 495.0 338 76.9
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 4.4e-112 408.7 345 62.9
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.2e-111 406.4 347 62.8
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 3.1e-105 386.0 320 62.8
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 2.6e-104 382.9 316 61.7
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 7.6e-104 381.3 338 58.9
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 2.9e-103 379.4 349 58.2
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.9e-103 379.4 349 58.2
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 8.4e-103 377.9 343 59.5
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 8.4e-103 377.9 333 60.7
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 1.1e-102 377.5 349 57.3
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.4e-102 377.1 316 60.8
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 6.0e-101 371.7 313 61.3
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 2.3e-100 369.8 343 58.3
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 3.3e-99 365.9 330 58.5
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 5.6e-99 365.2 338 56.5
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 7.3e-99 364.8 320 59.4
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 7.3e-99 364.8 320 59.4
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 8.1e-98 361.3 332 57.8
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 8.1e-98 361.3 332 57.8
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 8.1e-98 361.3 332 57.8
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 1.1e-97 360.9 334 57.5
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 1.4e-97 360.5 320 59.4
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 2.4e-97 359.8 334 57.2
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 2.4e-97 359.8 334 57.2
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 2.0e-96 356.7 339 58.1
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 1.0e-92 344.4 332 51.8
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 2.5e-91 339.7 331 52.9
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 4.3e-91 339.0 341 51.9
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 7.4e-91 338.2 330 52.4
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 7.4e-91 338.2 342 51.8
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 4.8e-90 335.5 332 53.0
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 6.2e-90 335.1 334 53.0
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 1.8e-89 333.6 349 50.4
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.8e-89 333.6 350 50.6
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 9.0e-89 331.3 320 52.8
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 1.3e-87 327.4 355 47.6
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 1.7e-87 327.0 324 52.5
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 3.8e-87 325.9 324 52.2
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 3.8e-87 325.9 333 51.4
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.4e-86 323.9 315 52.1
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 2.5e-86 323.2 331 50.5
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 5.5e-86 322.0 330 53.3
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 9.3e-86 321.2 313 54.0
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 1.6e-85 320.5 341 49.9
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 2.1e-85 320.1 344 50.0
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 2.7e-85 319.7 347 50.1
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 3.5e-85 319.3 323 51.1
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 4.6e-85 318.9 326 51.8
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.0e-84 317.8 331 51.4
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 1.3e-84 317.4 317 52.4
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.8e-84 317.0 340 49.4
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 3.0e-84 316.2 338 52.1
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 5.1e-84 315.5 320 51.2
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.1e-83 314.3 344 50.0
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 2.5e-83 313.2 329 50.2
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.5e-83 313.2 340 48.5
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 4.3e-83 312.4 315 51.4
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 4.3e-83 312.4 331 50.8
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 5.7e-83 312.0 319 52.4
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 7.4e-83 311.6 318 53.8
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.6e-82 310.5 316 50.6
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 1.6e-82 310.5 344 49.4
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 8.2e-82 308.1 319 49.5
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.1e-81 307.8 337 49.0
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 1.4e-81 307.4 338 48.8
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 1.8e-81 307.0 332 47.6
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 2.4e-81 306.6 332 48.5
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 2.4e-81 306.6 342 46.8
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.1e-81 305.8 334 48.8
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 4.1e-81 305.8 334 48.8
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 5.3e-81 305.4 320 49.7
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 6.9e-81 305.1 335 49.0
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 6.9e-81 305.1 323 48.6
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 9.0e-81 304.7 317 51.1
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 1.5e-80 303.9 324 49.1
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 2.0e-80 303.5 321 51.1
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 2.0e-80 303.5 323 48.9
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 3.4e-80 302.8 337 50.1
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 3.4e-80 302.8 337 50.1
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 3.4e-80 302.8 328 49.1
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.3e-79 300.8 323 48.6
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.7e-79 300.4 336 47.9
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 1.1e-78 297.7 339 47.5
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 3.2e-78 296.2 323 47.7
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 5.5e-78 295.4 330 49.1
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 5.5e-78 295.4 330 49.1
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 2.7e-77 293.1 318 49.4
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 3.5e-77 292.7 335 48.4
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 6.1e-77 292.0 342 47.4
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 7.9e-77 291.6 340 46.2
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 1.3e-76 290.8 339 46.9
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 2.3e-76 290.0 341 46.0
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 4.3e-75 285.8 332 45.5
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 4.3e-75 285.8 337 47.2
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 4.3e-75 285.8 327 48.3
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 3.7e-74 282.7 336 46.7
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 4.8e-74 282.3 320 46.9
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 5.3e-73 278.9 318 48.4
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 1.2e-72 277.7 334 44.9
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.6e-72 276.6 336 44.0
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 7.7e-72 275.0 335 47.2
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 2.2e-71 273.5 329 45.3
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 2.2e-71 273.5 275 50.9
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.8e-71 272.7 330 45.5
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 1.6e-69 267.3 325 46.5
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.1e-69 266.9 337 43.0
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 3.0e-68 263.1 261 52.1
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 8.8e-68 261.5 320 43.4
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 8.8e-68 261.5 347 41.2
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 2.2e-66 256.9 256 51.6
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.8e-66 255.8 283 48.4
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.4e-65 254.2 338 42.9
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 4.1e-65 252.7 314 43.3
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.1e-65 252.7 304 45.7
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 5.3e-65 252.3 313 42.2
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 6.9e-65 251.9 337 41.5
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.5e-64 250.8 322 44.4
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 7.7e-64 248.4 320 41.6
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 1.0e-63 248.1 312 44.9
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 1.3e-63 247.7 324 44.1
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.7e-63 247.3 315 44.4
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 1.4e-62 244.2 308 44.2
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.4e-62 244.2 336 39.9
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 7.2e-62 241.9 282 47.5
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 1.2e-61 241.1 336 39.3
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 4.7e-61 239.2 318 39.0
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 4.7e-61 239.2 272 48.5
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 4.7e-61 239.2 265 46.8
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 7.9e-61 238.4 340 40.9
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 7.9e-61 238.4 336 39.0
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.0e-60 238.0 328 40.2
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 8.8e-60 235.0 333 40.2
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 5.3e-57 225.7 326 38.7
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 1.2e-56 224.6 398 37.2
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 1.5e-56 224.2 333 38.4
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.5e-56 223.0 189 57.1
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 1.0e-55 221.5 270 45.2
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.3e-55 221.1 321 38.0
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 5.0e-55 219.2 189 55.6
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.1e-54 218.0 320 38.8
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.5e-54 216.9 191 53.9
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.2e-53 214.5 177 56.5
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.3e-52 210.3 215 50.7
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 8.8e-52 208.4 256 44.1
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 1.1e-51 208.0 333 40.5
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.3e-51 206.5 189 52.9
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.1e-49 201.4 180 51.7
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 8.8e-44 181.8 184 50.0
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 1.7e-42 177.6 328 36.3
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.7e-42 177.6 181 50.8
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 3.1e-41 173.3 181 46.4
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 3.5e-40 169.9 235 40.0
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 2.6e-35 153.7 202 41.6
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 2.4e-33 147.1 110 64.5
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 6.1e-29 132.5 170 44.7
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 1.8e-28 131.0 303 30.4
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 2.9e-26 123.6 148 49.3
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 2.9e-26 123.6 169 41.4
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 8.3e-26 122.1 336 30.7
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 3.2e-25 120.2 90 61.1
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 3.5e-24 116.7 104 58.7
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 1.1e-22 111.7 166 39.8
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 3.3e-22 110.2 92 55.4
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 1.2e-16 91.7 76 56.6
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 4.6e-16 89.7 94 50.0
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 1.6e-13 81.3 81 48.1
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 2.3e-12 77.4 74 58.1
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 3.1e-12 77.0 80 48.8
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 2.6e-11 73.9 80 45.0
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 1.9e-09 67.8 57 59.6
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 6.0e-08 62.8 49 57.1
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 1.7e-07 61.2 74 50.0


User provided reference genes

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