Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 1.1e-118 429.9 205 100.0
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 8.0e-117 423.7 205 99.5
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 3.3e-102 375.2 198 91.9
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 4.0e-100 368.2 201 90.0
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 3.2e-81 305.4 207 79.2
BcaC07g38691 Brassica carinata HOM05D004123 ORTHO05D004768 1.3e-71 273.5 216 68.1
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.3e-71 272.7 208 74.5
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 4.5e-67 258.5 203 70.9
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 3.8e-58 228.8 201 66.2
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 4.8e-53 211.8 207 59.9
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 8.5e-50 201.1 202 59.9
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 8.5e-50 201.1 209 57.9
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 9.4e-49 197.6 202 59.4
BraA06t24033Z Brassica rapa HOM05D004123 ORTHO05D004768 3.8e-42 175.6 204 52.0
BolC5t29729H Brassica oleracea HOM05D004123 ORTHO05D004768 9.4e-41 171.0 203 50.7
C05p09900 Brassica napus HOM05D004123 ORTHO05D004768 1.6e-40 170.2 202 51.0
A06p08360 Brassica napus HOM05D004123 ORTHO05D004768 2.7e-40 169.5 204 51.0
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 5.7e-38 161.8 194 56.2
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.5e-34 148.3 199 52.3
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 5.9e-27 125.2 212 45.8
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 5.9e-27 125.2 212 45.8
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 5.9e-27 125.2 212 45.8
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 2.2e-26 123.2 212 45.8
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 3.8e-26 122.5 220 45.9
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 5.0e-26 122.1 215 46.0
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 5.5e-25 118.6 221 43.4
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 3.6e-24 115.9 226 41.2
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 8.0e-24 114.8 213 43.7
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 8.0e-24 114.8 208 43.8
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 2.3e-23 113.2 226 38.5
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 3.0e-23 112.8 236 41.5
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 4.0e-23 112.5 212 43.4
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 4.0e-23 112.5 212 43.4
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 4.0e-23 112.5 234 39.3
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 5.2e-23 112.1 212 44.3
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 8.8e-23 111.3 208 42.8
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.2e-22 110.9 215 42.8
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 1.2e-22 110.9 219 39.7
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.5e-22 110.5 216 41.7
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 2.6e-22 109.8 228 39.9
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 3.4e-22 109.4 212 42.5
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.4e-22 109.4 210 40.0
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 3.4e-22 109.4 213 43.7
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 4.4e-22 109.0 208 43.3
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 9.8e-22 107.8 203 42.9
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 9.8e-22 107.8 222 44.1
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.3e-21 107.5 212 42.5
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 1.7e-21 107.1 225 40.9
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.7e-21 107.1 227 40.5
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 2.2e-21 106.7 194 42.3
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 3.7e-21 105.9 208 42.3
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.7e-21 105.9 239 39.3
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.8e-21 105.5 239 39.3
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 6.3e-21 105.1 211 40.8
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 6.3e-21 105.1 213 40.4
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 8.3e-21 104.8 222 40.5
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 8.3e-21 104.8 215 40.5
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 1.1e-20 104.4 211 41.7
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-20 104.4 210 39.0
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.4e-20 104.0 207 42.0
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 1.8e-20 103.6 223 37.7
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.8e-20 103.6 221 42.5
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 2.4e-20 103.2 239 38.9
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 2.4e-20 103.2 249 39.8
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 2.4e-20 103.2 198 41.4
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.1e-20 102.8 246 38.2
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 7.0e-20 101.7 210 41.0
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 7.0e-20 101.7 211 39.3
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 7.0e-20 101.7 221 41.2
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.2e-19 100.9 211 41.2
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.0e-19 100.1 211 41.2
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.0e-19 100.1 130 50.0
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.0e-19 100.1 211 39.3
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.7e-19 99.8 219 40.6
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.7e-19 99.8 237 35.9
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 5.9e-19 98.6 212 40.6
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 7.7e-19 98.2 208 41.3
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 7.7e-19 98.2 228 36.8
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 7.7e-19 98.2 216 39.8
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 1.3e-18 97.4 144 47.2
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 5.0e-18 95.5 134 49.3
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 6.5e-18 95.1 241 38.6
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 6.5e-18 95.1 210 37.6
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 1.5e-17 94.0 145 47.6
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.5e-17 94.0 191 41.4
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 1.9e-17 93.6 223 37.2
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.9e-17 93.6 170 41.2
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.9e-17 93.6 191 40.8
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 3.2e-17 92.8 210 37.6
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 5.5e-17 92.0 228 38.6
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 7.2e-17 91.7 182 40.7
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 7.2e-17 91.7 218 39.4
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 7.2e-17 91.7 233 37.8
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 9.5e-17 91.3 157 43.9
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 9.5e-17 91.3 166 44.0
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.2e-16 90.9 93 55.9
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.1e-16 90.1 161 42.9
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 2.8e-16 89.7 234 36.8
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 4.7e-16 89.0 201 39.8
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 6.1e-16 88.6 207 34.3
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 6.1e-16 88.6 262 35.9
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 6.1e-16 88.6 91 54.9
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 8.0e-16 88.2 110 50.9
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.0e-15 87.8 214 38.8
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.8e-15 87.0 108 52.8
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 2.3e-15 86.7 180 40.0
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 4.0e-15 85.9 162 43.2
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 6.8e-15 85.1 165 40.6
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 6.8e-15 85.1 207 37.7
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 2.6e-14 83.2 182 37.9
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 3.4e-14 82.8 236 34.7
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 3.4e-14 82.8 229 36.7
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 3.4e-14 82.8 98 52.0
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 5.7e-14 82.0 216 37.5
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.3e-13 80.9 81 58.0
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.7e-13 80.5 206 37.4
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 2.2e-13 80.1 80 58.8
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 2.2e-13 80.1 231 32.9
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 2.2e-13 80.1 239 32.2
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 3.7e-13 79.3 161 37.9
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 3.7e-13 79.3 221 36.7
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 4.9e-13 79.0 161 39.1
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 2.4e-12 76.6 162 42.6
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.1e-12 76.3 100 47.0
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.1e-12 76.3 100 47.0
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 7.0e-12 75.1 204 35.3
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 9.2e-12 74.7 178 39.3
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 7.8e-11 71.6 63 61.9
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.7e-10 70.5 101 47.5
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 8.6e-10 68.2 220 36.4
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.5e-09 67.4 218 33.9
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.8e-07 60.5 51 58.8
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.3e-07 60.1 51 58.8
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.0e-07 59.7 67 50.7
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 4.0e-07 59.3 78 42.3
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 6.8e-07 58.5 45 64.4
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 1.2e-06 57.8 73 47.9
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.2e-06 57.8 44 63.6
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.4e-06 56.2 43 60.5


User provided reference genes

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