Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.5e-164 582.8 301 100.0
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.5e-164 582.8 301 100.0
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 2.1e-158 562.4 304 96.1
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 4.0e-157 558.1 307 95.8
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 4.0e-157 558.1 307 95.8
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 2.2e-155 552.4 301 95.3
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 9.6e-143 510.4 301 87.4
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 3.6e-142 508.4 301 87.7
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 8.1e-142 507.3 301 86.4
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.7e-139 499.6 301 85.0
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 8.4e-139 497.3 301 84.7
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 5.1e-136 488.0 300 85.0
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.1e-133 480.3 301 84.4
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 8.4e-131 470.7 279 87.5
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 8.4e-131 470.7 279 87.5
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 1.0e-128 463.8 302 78.8
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 1.5e-127 459.9 279 86.0
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 4.0e-125 451.8 301 79.7
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 4.9e-123 444.9 304 76.6
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 6.3e-118 427.9 288 75.0
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 6.3e-118 427.9 288 75.0
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 6.9e-117 424.5 235 90.2
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.5e-116 423.3 294 73.1
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 7.6e-116 421.0 306 72.5
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.7e-115 419.9 298 73.2
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.1e-114 417.2 296 73.3
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.4e-114 416.8 295 72.2
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 3.2e-114 415.6 298 70.5
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 3.2e-114 415.6 295 72.5
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 8.8e-112 407.5 266 76.7
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 2.5e-111 406.0 304 70.1
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 2.2e-110 402.9 305 70.2
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 2.8e-110 402.5 300 70.0
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 4.8e-110 401.7 301 67.8
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 6.3e-110 401.4 299 68.6
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 6.3e-110 401.4 298 70.8
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 8.2e-110 401.0 293 69.3
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.1e-109 400.6 300 68.0
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 1.1e-109 400.6 303 68.6
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 1.1e-109 400.6 304 68.4
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 1.1e-109 400.6 334 64.4
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.8e-109 399.8 300 69.3
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 5.3e-109 398.3 299 69.9
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 6.9e-109 397.9 283 70.3
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 9.1e-109 397.5 300 69.0
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.6e-108 396.0 295 69.2
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 3.4e-108 395.6 300 68.7
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 5.9e-108 394.8 305 68.2
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 7.7e-108 394.4 303 67.7
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 1.0e-107 394.0 300 68.3
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.3e-107 393.7 300 68.3
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 1.3e-107 393.7 275 72.4
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 1.7e-107 393.3 299 68.2
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.7e-107 393.3 299 68.2
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.7e-107 393.3 278 72.3
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.7e-107 393.3 299 68.6
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 2.2e-107 392.9 299 69.6
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 6.5e-107 391.3 276 69.2
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 6.5e-107 391.3 299 67.9
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 8.5e-107 391.0 276 69.2
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.9e-106 389.8 281 70.8
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 2.5e-106 389.4 298 67.8
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.2e-106 388.7 300 68.3
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 7.2e-106 387.9 282 69.1
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 2.7e-105 386.0 314 66.9
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 4.7e-105 385.2 300 65.7
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 7.9e-105 384.4 278 71.2
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.0e-104 384.0 310 64.8
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.4e-104 383.6 297 66.0
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 1.8e-104 383.3 330 63.0
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 1.1e-103 380.6 278 69.1
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 1.5e-103 380.2 308 64.9
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 2.0e-103 379.8 282 68.1
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.3e-102 377.1 322 64.0
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.7e-102 376.7 271 69.0
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 2.2e-102 376.3 270 70.0
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.8e-102 375.9 249 73.1
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 2.8e-102 375.9 303 64.0
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 6.3e-102 374.8 248 71.8
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 1.4e-101 373.6 284 68.3
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 1.8e-101 373.2 307 63.2
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 4.1e-101 372.1 278 67.3
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 4.1e-101 372.1 280 68.9
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.1e-101 370.9 256 69.1
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 9.1e-101 370.9 271 67.2
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.2e-100 370.5 301 64.1
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 2.0e-100 369.8 270 69.3
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.6e-100 369.4 297 65.7
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 4.5e-100 368.6 282 69.1
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 4.5e-100 368.6 282 69.1
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 5.9e-100 368.2 300 67.0
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 6.5e-99 364.8 282 67.7
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 8.5e-99 364.4 257 67.7
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.2e-98 362.1 249 69.1
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 5.5e-98 361.7 253 70.4
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 5.5e-98 361.7 309 64.4
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 7.2e-98 361.3 308 63.0
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.6e-97 360.1 219 77.6
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.1e-97 359.8 279 63.8
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 8.0e-97 357.8 301 60.1
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 6.7e-96 354.8 306 63.7
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 8.8e-96 354.4 290 63.1
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 8.8e-96 354.4 307 62.2
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 1.5e-95 353.6 301 59.1
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 3.7e-94 349.0 295 62.0
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 4.1e-93 345.5 256 69.9
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 9.1e-93 344.4 284 63.0
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 9.1e-93 344.4 265 67.2
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 3.8e-91 339.0 305 60.0
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 9.4e-90 334.3 295 61.0
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 4.0e-88 328.9 250 68.0
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 3.3e-87 325.9 248 63.7
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 7.5e-87 324.7 259 64.9
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 5.3e-85 318.5 251 61.8
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 1.9e-82 310.1 251 63.7
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 5.5e-82 308.5 304 54.9
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 1.0e-80 304.3 262 59.2
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 1.2e-79 300.8 278 57.2
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 1.3e-78 297.4 271 57.2
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 8.3e-78 294.7 208 74.0
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 1.5e-74 283.9 281 52.7
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.6e-73 279.3 262 52.3
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 4.7e-73 278.9 264 54.5
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 3.4e-71 272.7 298 50.3
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.2e-70 270.0 196 65.8
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 4.9e-70 268.9 180 74.4
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 1.6e-68 263.8 164 87.2
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 3.3e-66 256.1 287 50.9
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.9e-64 248.1 176 67.6
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 4.6e-60 235.7 216 54.2
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 1.3e-59 234.2 230 53.5
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 8.6e-59 231.5 142 75.4
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 3.6e-57 226.1 142 74.6
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.7e-54 217.2 142 69.0
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.5e-50 201.4 182 58.8
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.3e-48 196.8 240 43.8
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 4.4e-47 192.6 128 71.1
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 3.7e-46 189.5 161 69.6
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 6.4e-46 188.7 127 70.9
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 1.1e-45 188.0 114 77.2
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 3.3e-42 176.4 233 46.8
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.7e-41 172.6 225 46.7
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 4.0e-40 169.5 194 56.7
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 2.1e-36 157.1 137 67.2
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 6.6e-35 152.1 220 41.8
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 4.0e-32 142.9 253 36.4
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.0e-31 140.6 154 51.9
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.2e-28 131.3 84 71.4
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 1.1e-24 118.2 72 80.6
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 2.4e-24 117.1 82 64.6
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 3.4e-23 113.2 86 62.8
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.4e-21 105.9 61 77.0
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 2.1e-20 104.0 184 33.2
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 4.8e-17 92.8 62 67.7
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 3.1e-16 90.1 50 84.0
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 9.0e-16 88.6 154 33.1
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 5.8e-15 85.9 156 34.6
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 2.2e-14 84.0 286 25.9
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 3.8e-14 83.2 268 26.1
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 2.7e-12 77.0 60 71.7
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 2.7e-12 77.0 60 71.7
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 6.0e-12 75.9 158 26.6
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 4.0e-08 63.2 130 30.8
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 1.2e-07 61.6 156 28.2
Zm00001eb379240 Zea mays HOM05D000565 ORTHO05D004389 7.6e-07 58.9 172 26.7
HanXRQChr16g0531381 Helianthus annuus HOM05D000565 ORTHO05D004389 1.7e-06 57.8 174 27.0
COL.COLO4_26135 Corchorus olitorius HOM05D000565 ORTHO05D004389 2.9e-06 57.0 172 27.3
Lsat_1_v5_gn_3_73300 Lactuca sativa HOM05D000565 ORTHO05D004389 2.9e-06 57.0 184 27.7
AagrBONN_evm.TU.Sc2ySwM_117.302 Anthoceros agrestis HOM05D000565 ORTHO05D004389 4.9e-06 56.2 173 28.3
ECA246G2128 Erigeron canadensis HOM05D000565 ORTHO05D004389 4.9e-06 56.2 174 26.4
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 4.9e-06 56.2 161 27.3
Solyc02g062130.4 Solanum lycopersicum HOM05D000565 ORTHO05D004389 4.9e-06 56.2 173 26.6
Aa31LG7G4470 Aethionema arabicum HOM05D000565 ORTHO05D004389 6.5e-06 55.8 159 27.7
TWI09G0643 Tripterygium wilfordii HOM05D000565 ORTHO05D004389 6.5e-06 55.8 173 26.6
Gohir.A05G186100 Gossypium hirsutum HOM05D000565 ORTHO05D004389 8.4e-06 55.5 172 26.2
Gohir.D05G189000 Gossypium hirsutum HOM05D000565 ORTHO05D004389 8.4e-06 55.5 172 26.2
Gorai.009G194200 Gossypium raimondii HOM05D000565 ORTHO05D004389 8.4e-06 55.5 172 26.2
Sopen02g013100 Solanum pennellii HOM05D000565 ORTHO05D004389 8.4e-06 55.5 173 26.6
PGSC0003DMG402003567 Solanum tuberosum HOM05D000565 ORTHO05D004389 8.4e-06 55.5 174 25.9


User provided reference genes

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