Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 6.1e-80 300.8 160 100.0
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 6.1e-80 300.8 160 100.0
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 2.0e-78 295.8 160 97.5
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 4.4e-78 294.7 158 98.7
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 4.4e-78 294.7 158 98.7
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 1.7e-77 292.7 160 97.5
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 2.2e-77 292.4 159 97.5
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 1.8e-76 289.3 158 98.1
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 4.1e-76 288.1 158 97.5
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 1.6e-75 286.2 160 95.0
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 1.3e-74 283.1 160 90.0
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 4.3e-73 278.1 160 89.4
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 7.3e-73 277.3 160 88.8
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 2.1e-72 275.8 160 88.8
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 4.0e-71 271.6 160 86.9
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 2.0e-70 269.2 141 97.9
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 8.9e-63 243.8 161 77.0
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 5.6e-57 224.6 158 69.6
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 7.3e-57 224.2 156 70.5
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 9.5e-57 223.8 160 70.6
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 2.1e-56 222.6 121 98.3
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 1.1e-55 220.3 160 68.1
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 1.1e-55 220.3 157 68.8
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 1.1e-55 220.3 157 68.8
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 1.4e-55 219.9 156 69.2
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 1.4e-55 219.9 163 67.5
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 1.8e-55 219.5 141 75.2
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 1.8e-55 219.5 141 74.5
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 1.8e-55 219.5 157 70.1
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.8e-55 219.5 162 69.1
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.8e-55 219.5 162 68.5
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.8e-55 219.5 159 68.6
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 2.3e-55 219.2 160 67.5
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 3.1e-55 218.8 156 69.9
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 3.1e-55 218.8 156 67.9
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 3.1e-55 218.8 162 69.1
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 3.1e-55 218.8 160 66.9
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 3.1e-55 218.8 159 68.6
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 3.1e-55 218.8 160 67.5
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 4.0e-55 218.4 162 68.5
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 4.0e-55 218.4 158 69.6
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 6.8e-55 217.6 156 67.9
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 6.8e-55 217.6 156 67.9
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 6.8e-55 217.6 141 75.2
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 8.9e-55 217.2 156 69.9
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.5e-54 216.5 156 69.2
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 1.5e-54 216.5 156 67.9
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 1.5e-54 216.5 141 75.2
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 2.0e-54 216.1 157 70.7
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.0e-54 216.1 156 67.3
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 2.6e-54 215.7 156 67.9
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 3.4e-54 215.3 160 67.5
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 3.4e-54 215.3 141 75.2
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 3.4e-54 215.3 141 73.8
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 4.4e-54 214.9 139 74.1
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 5.8e-54 214.5 141 73.0
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 5.8e-54 214.5 152 69.1
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 5.8e-54 214.5 141 75.2
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 7.5e-54 214.2 158 69.6
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 9.9e-54 213.8 152 68.4
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 9.9e-54 213.8 152 68.4
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 1.3e-53 213.4 141 73.0
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 1.3e-53 213.4 141 71.6
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 2.2e-53 212.6 162 66.0
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.2e-53 212.6 152 68.4
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 2.2e-53 212.6 156 67.9
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 2.2e-53 212.6 156 67.3
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 2.9e-53 212.2 156 67.3
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 3.7e-53 211.8 141 71.6
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 4.9e-53 211.5 159 69.2
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 4.9e-53 211.5 160 66.2
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 6.4e-53 211.1 157 69.4
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 8.3e-53 210.7 137 76.6
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 1.1e-52 210.3 141 71.6
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 1.1e-52 210.3 141 71.6
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.4e-52 209.9 158 65.8
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 1.9e-52 209.5 156 66.7
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 1.9e-52 209.5 144 72.2
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 1.9e-52 209.5 157 66.9
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.9e-52 209.5 141 73.0
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 2.4e-52 209.1 160 69.4
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 4.1e-52 208.4 158 65.8
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 4.1e-52 208.4 160 68.1
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 5.4e-52 208.0 153 68.0
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 5.4e-52 208.0 141 70.9
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 7.1e-52 207.6 158 64.6
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 7.1e-52 207.6 151 66.2
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 9.2e-52 207.2 159 66.0
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 9.2e-52 207.2 141 70.2
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 1.2e-51 206.8 138 73.2
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 3.5e-51 205.3 141 70.2
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 4.6e-51 204.9 156 64.1
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 6.0e-51 204.5 141 70.2
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 7.8e-51 204.1 141 69.5
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 7.8e-51 204.1 141 69.5
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 1.3e-50 203.4 141 69.5
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.3e-50 203.4 141 68.8
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 1.3e-50 203.4 138 71.0
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 2.3e-50 202.6 141 68.8
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 2.3e-50 202.6 157 65.0
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 3.0e-50 202.2 165 64.2
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 3.0e-50 202.2 141 68.1
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 3.0e-50 202.2 160 61.2
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 5.1e-50 201.4 158 62.7
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 6.6e-50 201.1 141 69.5
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 1.1e-49 200.3 141 66.0
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 7.3e-49 197.6 160 64.4
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 7.3e-49 197.6 160 60.0
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 9.5e-49 197.2 161 62.1
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 1.2e-48 196.8 141 65.2
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 1.2e-48 196.8 157 63.7
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 2.1e-48 196.1 139 66.2
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 2.8e-48 195.7 141 65.2
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 3.6e-48 195.3 141 68.8
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 6.2e-48 194.5 157 61.8
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 4.4e-46 188.3 130 70.0
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 5.8e-46 188.0 141 61.0
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 1.3e-45 186.8 179 55.9
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 3.3e-41 172.2 162 54.9
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 4.3e-41 171.8 205 48.3
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 2.6e-38 162.5 159 55.3
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 2.2e-37 159.5 157 56.1
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 1.1e-36 157.1 93 81.7
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 1.9e-36 156.4 127 58.3
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 6.6e-34 147.9 111 64.0
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 3.3e-33 145.6 110 66.4
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 4.8e-32 141.7 93 69.9
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 1.8e-31 139.8 136 51.5
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 2.2e-29 132.9 139 48.9
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 1.9e-28 129.8 153 45.1
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 4.2e-28 128.6 87 70.1
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 5.3e-23 111.7 98 58.2
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 1.1e-15 87.4 114 43.9
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 7.6e-14 81.3 114 42.1
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 1.0e-13 80.9 59 62.7
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 8.4e-13 77.8 48 72.9
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 2.5e-12 76.3 50 76.0


User provided reference genes

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