Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 5.1e-54 214.2 109 100.0
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 1.1e-16 90.1 48 93.8
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 3.0e-09 65.5 50 68.0
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 3.0e-09 65.5 50 70.0
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 3.9e-09 65.1 62 61.3
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 6.6e-09 64.3 49 69.4
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 8.6e-09 63.9 49 67.3
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 8.6e-09 63.9 50 68.0
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 1.1e-08 63.5 32 93.8
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 1.1e-08 63.5 32 93.8
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 1.1e-08 63.5 32 93.8
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 1.1e-08 63.5 32 93.8
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 1.1e-08 63.5 46 73.9
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 1.1e-08 63.5 32 93.8
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 1.1e-08 63.5 32 93.8
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 1.1e-08 63.5 32 93.8
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 1.1e-08 63.5 32 93.8
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.1e-08 63.5 32 93.8
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.1e-08 63.5 32 93.8
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 1.5e-08 63.2 47 68.1
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 1.9e-08 62.8 49 65.3
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 1.9e-08 62.8 29 100.0
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 1.9e-08 62.8 29 100.0
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 1.9e-08 62.8 29 100.0
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 1.9e-08 62.8 29 100.0
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 1.9e-08 62.8 29 100.0
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 2.5e-08 62.4 32 90.6
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 2.5e-08 62.4 48 68.8
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 3.3e-08 62.0 32 90.6
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 3.3e-08 62.0 32 90.6
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 3.3e-08 62.0 32 90.6
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 3.3e-08 62.0 32 90.6
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 3.3e-08 62.0 32 90.6
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 3.3e-08 62.0 49 67.3
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 3.3e-08 62.0 49 65.3
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 3.3e-08 62.0 49 65.3
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 3.3e-08 62.0 49 65.3
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 3.3e-08 62.0 49 65.3
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 3.3e-08 62.0 49 65.3
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 3.3e-08 62.0 32 90.6
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 3.3e-08 62.0 32 90.6
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 3.3e-08 62.0 50 64.0
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 4.3e-08 61.6 49 65.3
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 4.3e-08 61.6 32 90.6
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 4.3e-08 61.6 32 90.6
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 4.3e-08 61.6 50 62.0
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 4.3e-08 61.6 49 65.3
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 4.3e-08 61.6 49 65.3
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 4.3e-08 61.6 32 90.6
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 4.3e-08 61.6 49 63.3
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 4.3e-08 61.6 50 62.0
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.3e-08 61.6 50 62.0
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 4.3e-08 61.6 32 90.6
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 4.3e-08 61.6 50 62.0
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 4.3e-08 61.6 50 62.0
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 4.3e-08 61.6 32 90.6
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 5.6e-08 61.2 29 96.6
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 5.6e-08 61.2 29 96.6
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 5.6e-08 61.2 29 96.6
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 7.3e-08 60.8 29 96.6
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 7.3e-08 60.8 50 62.0
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 7.3e-08 60.8 49 63.3
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 7.3e-08 60.8 29 96.6
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 7.3e-08 60.8 49 63.3
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 9.5e-08 60.5 49 63.3
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 9.5e-08 60.5 49 63.3
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 9.5e-08 60.5 49 63.3
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 9.5e-08 60.5 49 63.3
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 9.5e-08 60.5 32 87.5
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 1.2e-07 60.1 49 59.2
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 1.2e-07 60.1 49 65.3
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.6e-07 59.7 50 62.0
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 1.6e-07 59.7 32 87.5
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.6e-07 59.7 49 59.2
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.6e-07 59.7 49 59.2
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 1.6e-07 59.7 50 60.0
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 2.1e-07 59.3 32 87.5
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.1e-07 59.3 49 63.3
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 2.1e-07 59.3 49 63.3
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 2.1e-07 59.3 29 93.1
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 2.1e-07 59.3 32 87.5
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 2.1e-07 59.3 32 87.5
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 2.8e-07 58.9 49 61.2
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 2.8e-07 58.9 49 59.2
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.8e-07 58.9 49 61.2
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 2.8e-07 58.9 49 59.2
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 2.8e-07 58.9 49 63.3
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 2.8e-07 58.9 49 59.2
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 3.6e-07 58.5 49 63.3
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 3.6e-07 58.5 29 93.1
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.6e-07 58.5 49 63.3
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 4.7e-07 58.2 32 81.2
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 4.7e-07 58.2 49 61.2
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 6.2e-07 57.8 33 78.8
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 6.2e-07 57.8 49 61.2
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 6.2e-07 57.8 49 59.2
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 8.0e-07 57.4 32 84.4
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 8.0e-07 57.4 32 84.4
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 8.0e-07 57.4 49 61.2
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 1.1e-06 57.0 49 61.2
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 1.4e-06 56.6 32 84.4
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.4e-06 56.6 49 61.2
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.4e-06 56.6 32 84.4
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 1.4e-06 56.6 50 56.0
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.8e-06 56.2 49 59.2
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 1.8e-06 56.2 49 59.2
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 1.8e-06 56.2 49 59.2
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 3.1e-06 55.5 29 89.7
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 3.1e-06 55.5 49 65.3
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 3.1e-06 55.5 49 59.2
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 4.0e-06 55.1 50 62.0
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 5.2e-06 54.7 50 54.0
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 5.2e-06 54.7 27 92.6


User provided reference genes

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