Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 0.0e+00 1443.7 754 100.0
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 0.0e+00 1325.8 762 92.5
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 0.0e+00 1318.5 772 91.2
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 0.0e+00 1302.7 759 91.2
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 0.0e+00 1155.2 758 81.0
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 0.0e+00 1131.7 756 78.7
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 0.0e+00 1128.2 761 79.0
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 0.0e+00 1123.2 760 78.7
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 0.0e+00 1086.6 760 77.4
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 1.6e-303 1045.8 793 71.5
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 2.5e-296 1021.9 571 88.6
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 3.3e-285 984.9 757 70.9
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 9.1e-275 950.3 781 68.5
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 1.8e-243 846.3 761 59.3
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 4.0e-238 828.6 758 58.0
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 4.0e-238 828.6 707 59.7
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 5.4e-235 818.1 643 65.5
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 2.7e-234 815.8 758 58.6
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 3.9e-233 812.0 776 56.4
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.3e-232 808.5 764 58.4
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.1e-227 793.9 766 56.8
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 2.4e-227 792.7 756 55.4
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 2.3e-225 786.2 721 61.3
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 2.3e-225 786.2 701 57.6
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 7.3e-224 781.2 748 56.4
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 2.1e-223 779.6 760 57.6
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 8.1e-223 777.7 720 58.6
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 3.1e-222 775.8 709 58.5
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 6.8e-222 774.6 698 57.0
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 2.6e-221 772.7 615 62.8
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 4.4e-221 771.9 699 56.9
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 1.9e-219 766.5 745 55.6
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 2.4e-219 766.1 757 53.8
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 3.2e-219 765.8 757 55.1
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 4.1e-219 765.4 743 55.6
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 7.1e-219 764.6 607 62.9
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 6.0e-218 761.5 609 63.1
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 3.9e-217 758.8 750 56.1
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 6.6e-217 758.1 735 53.9
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 9.5e-216 754.2 762 55.5
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 2.8e-215 752.7 765 55.7
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 8.9e-214 747.7 748 55.2
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 2.0e-213 746.5 706 57.5
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 1.3e-212 743.8 598 61.4
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 2.2e-212 743.0 689 58.6
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 1.9e-211 740.0 765 53.7
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 3.2e-211 739.2 757 54.2
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 7.1e-211 738.0 670 59.4
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 1.2e-210 737.3 706 57.2
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 1.2e-210 737.3 703 55.0
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 1.7e-209 733.4 597 60.3
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 1.1e-208 730.7 754 53.2
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 1.2e-207 727.2 710 56.6
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 4.0e-206 722.2 547 63.4
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 4.4e-205 718.8 751 52.5
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 9.3e-203 711.1 608 59.9
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 1.2e-202 710.7 744 54.4
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 1.6e-202 710.3 770 52.3
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 4.6e-202 708.8 613 59.2
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 1.5e-200 703.7 749 52.9
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 5.6e-200 701.8 621 58.0
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 1.1e-198 697.6 744 52.6
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 3.8e-196 689.1 623 56.8
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 5.4e-195 685.3 625 55.8
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.2e-194 684.1 785 50.8
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 3.5e-194 682.6 676 53.8
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 7.9e-194 681.4 649 55.6
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 2.8e-191 672.9 722 50.8
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 4.5e-189 665.6 634 55.5
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 1.7e-188 663.7 1051 40.7
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 1.9e-187 660.2 611 55.6
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 8.7e-185 651.4 601 56.1
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.1e-183 646.7 757 50.1
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 6.9e-182 641.7 885 45.2
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 4.5e-181 639.0 691 49.6
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 2.9e-180 636.3 568 56.9
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.8e-180 636.0 602 55.0
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.2e-178 630.9 680 51.5
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 1.6e-178 630.6 670 50.0
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 1.6e-178 630.6 676 51.6
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 1.5e-176 624.0 810 47.7
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.0e-172 611.3 647 50.1
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 8.5e-172 608.2 722 47.6
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.9e-171 607.1 767 47.8
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 6.7e-169 598.6 618 51.6
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 1.7e-167 594.0 614 50.2
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.4e-165 586.3 685 51.2
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 1.5e-157 560.8 621 49.3
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.9e-156 556.6 848 43.9
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 3.0e-153 546.6 709 43.2
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 2.6e-152 543.5 750 43.3
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 1.3e-151 541.2 621 45.4
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 1.5e-144 517.7 562 51.1
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 4.4e-144 516.2 581 48.7
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 8.3e-143 511.9 393 66.2
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 2.4e-142 510.4 776 40.9
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 1.2e-136 491.5 381 64.3
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 7.5e-136 488.8 660 41.8
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 4.8e-135 486.1 515 51.5
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 1.4e-129 468.0 397 59.7
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.1e-126 458.4 533 51.2
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 6.1e-122 442.6 701 41.5
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 4.0e-121 439.9 776 40.1
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 9.5e-115 418.7 346 61.0
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.1e-113 413.7 325 61.5
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.2e-109 401.7 327 60.2
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 4.6e-109 399.8 312 63.1
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.6e-109 399.8 291 65.3
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 6.6e-108 396.0 353 58.9
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 2.4e-97 360.9 444 42.8
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 8.9e-97 359.0 498 40.6
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 1.2e-93 348.6 522 38.3
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.6e-93 348.2 545 42.4
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 7.8e-93 345.9 447 47.7
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 4.5e-80 303.5 493 41.8
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 4.2e-78 297.0 768 30.9
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 1.2e-72 278.9 302 52.3
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 4.5e-72 276.9 600 30.7
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 3.9e-68 263.8 290 51.4
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 9.3e-62 242.7 284 52.5
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.7e-61 241.1 216 57.4
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 8.7e-60 236.1 299 47.5
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 6.9e-57 226.5 153 68.6
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 3.4e-56 224.2 157 68.2
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.5e-54 218.0 229 48.5
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 3.0e-52 211.1 200 57.5
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.1e-52 210.3 148 68.2
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 5.3e-49 200.3 148 64.9
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.2e-48 199.1 136 70.6
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 2.6e-48 198.0 357 38.7
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 1.0e-47 196.1 284 42.3
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 9.4e-46 189.5 196 52.6
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 8.2e-42 176.4 234 43.6
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 1.2e-37 162.5 293 39.2
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 2.3e-36 158.3 319 35.7
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 1.1e-33 149.4 355 34.1
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.7e-31 142.1 117 64.1
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.5e-30 137.1 93 76.3
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 4.4e-27 127.5 288 31.2
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 5.7e-27 127.1 261 33.7
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 9.8e-27 126.3 267 34.1
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 9.8e-27 126.3 85 74.1
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 8.3e-26 123.2 120 56.7
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.2e-24 119.4 81 66.7
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 1.9e-22 112.1 84 64.3
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 6.1e-21 107.1 85 61.2
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 2.8e-18 98.2 71 70.4
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.7e-18 97.8 89 58.4
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 8.3e-18 96.7 106 50.9
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-17 95.9 71 67.6
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 6.8e-12 77.0 93 52.7
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 9.8e-11 73.2 81 50.6
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 6.6e-07 60.5 98 41.8
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 9.5e-06 56.6 41 63.4


User provided reference genes

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