Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 2.0e-36 155.2 75 100.0
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 2.0e-36 155.2 75 100.0
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 1.3e-32 142.5 74 94.6
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 9.7e-28 126.3 68 94.1
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 4.8e-27 124.0 68 92.6
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 6.3e-27 123.6 75 81.3
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 5.9e-25 117.1 84 71.4
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 7.7e-25 116.7 81 76.5
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 4.2e-23 110.9 82 73.2
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 4.2e-23 110.9 78 74.4
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 2.7e-22 108.2 80 68.8
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 3.6e-22 107.8 82 70.7
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 7.4e-20 100.1 84 65.5
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 9.7e-20 99.8 81 66.7
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 9.7e-20 99.8 81 66.7
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 9.1e-18 93.2 83 62.7
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 3.8e-16 87.8 81 59.3
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 3.8e-16 87.8 81 59.3
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 3.8e-16 87.8 81 59.3
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 3.8e-16 87.8 81 59.3
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 6.5e-16 87.0 82 59.8
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 1.9e-15 85.5 74 63.5
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 3.2e-15 84.7 74 62.2
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 3.2e-15 84.7 74 62.2
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 4.2e-15 84.3 72 56.9
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 5.5e-15 84.0 69 65.2
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 6.1e-14 80.5 74 54.1
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 8.0e-14 80.1 72 56.9
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 8.0e-14 80.1 75 56.0
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 8.0e-14 80.1 79 54.4
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 1.8e-13 79.0 74 55.4
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 2.3e-13 78.6 74 54.1
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 5.2e-13 77.4 72 51.4
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 6.8e-13 77.0 76 53.9
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 8.8e-13 76.6 74 50.0
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 1.2e-12 76.3 73 53.4
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.2e-12 76.3 72 54.2
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.5e-12 75.9 72 55.6
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 1.5e-12 75.9 76 53.9
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.5e-12 75.9 74 52.7
THA.LOC109116474 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 2.0e-12 75.5 79 55.7
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.6e-12 75.1 81 51.9
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 3.4e-12 74.7 81 49.4
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 3.4e-12 74.7 72 55.6
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 3.4e-12 74.7 72 51.4
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 4.4e-12 74.3 76 51.3
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 5.7e-12 73.9 72 52.8
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 5.7e-12 73.9 72 54.2
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.3e-11 72.8 73 50.7
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.3e-11 72.8 74 52.7
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 1.3e-11 72.8 72 52.8
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 1.7e-11 72.4 76 48.7
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.7e-11 72.4 74 51.4
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 2.2e-11 72.0 79 48.1
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 2.8e-11 71.6 76 50.0
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.7e-11 71.2 72 51.4
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.7e-11 71.2 77 53.2
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 6.3e-11 70.5 76 47.4
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 6.3e-11 70.5 72 51.4
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 8.3e-11 70.1 76 50.0
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 8.3e-11 70.1 76 50.0
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 8.3e-11 70.1 71 52.1
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 1.1e-10 69.7 75 53.3
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 1.8e-10 68.9 73 49.3
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.8e-10 68.9 74 48.6
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 2.4e-10 68.6 83 47.0
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 3.1e-10 68.2 73 47.9
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 3.1e-10 68.2 76 53.9
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 3.1e-10 68.2 72 50.0
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 3.1e-10 68.2 68 50.0
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.1e-10 67.8 72 48.6
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 4.1e-10 67.8 72 50.0
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.3e-10 67.4 72 50.0
THA.LOC109116673 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 5.3e-10 67.4 74 48.6
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 5.3e-10 67.4 77 46.8
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 7.0e-10 67.0 76 48.7
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 7.0e-10 67.0 73 49.3
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 1.6e-09 65.9 71 53.5
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.0e-09 65.5 73 53.4
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 2.0e-09 65.5 74 45.9
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.7e-09 65.1 76 47.4
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 2.7e-09 65.1 74 50.0
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 3.5e-09 64.7 72 47.2
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 4.5e-09 64.3 75 45.3
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.5e-09 64.3 75 50.7
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 4.5e-09 64.3 74 50.0
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 5.9e-09 63.9 80 47.5
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 5.9e-09 63.9 77 45.5
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 5.9e-09 63.9 73 46.6
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 7.7e-09 63.5 76 46.1
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 1.0e-08 63.2 71 46.5
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.0e-08 63.2 73 45.2
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.0e-08 63.2 73 45.2
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.0e-08 63.2 74 44.6
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.0e-08 63.2 72 43.1
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 1.0e-08 63.2 72 47.2
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 1.3e-08 62.8 70 41.4
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 1.3e-08 62.8 77 44.2
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 1.3e-08 62.8 74 47.3
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.7e-08 62.4 72 47.2
THA.LOC104821473 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 2.2e-08 62.0 72 47.2
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 2.9e-08 61.6 74 47.3
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 2.9e-08 61.6 79 41.8
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 2.9e-08 61.6 72 45.8
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.9e-08 61.6 77 46.8
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 3.8e-08 61.2 73 45.2
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.8e-08 61.2 75 42.7
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 3.8e-08 61.2 78 43.6
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 5.0e-08 60.8 74 45.9
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 8.5e-08 60.1 76 46.1
BraA06t25683Z Brassica rapa HOM05D013399 ORTHO05D004009 8.5e-08 60.1 74 43.2
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 8.5e-08 60.1 74 44.6
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 8.5e-08 60.1 72 45.8
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 8.5e-08 60.1 72 45.8
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 1.1e-07 59.7 76 42.1
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.1e-07 59.7 72 45.8
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 1.1e-07 59.7 74 45.9
HanXRQChr04g0107311 Helianthus annuus HOM05D003533 ORTHO05D004009 1.5e-07 59.3 70 44.3
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 1.5e-07 59.3 65 49.2
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.5e-07 59.3 74 47.3
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 1.9e-07 58.9 77 42.9
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 1.9e-07 58.9 72 41.7
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.9e-07 58.9 74 44.6
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.9e-07 58.9 79 41.8
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.5e-07 58.5 74 43.2
A06p27440 Brassica napus HOM05D013399 ORTHO05D004009 3.2e-07 58.2 74 41.9
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 4.2e-07 57.8 46 58.7
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 4.2e-07 57.8 74 44.6
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 4.2e-07 57.8 74 44.6
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 4.2e-07 57.8 72 44.4
BcaC01g02313 Brassica carinata HOM05D013399 ORTHO05D004009 5.5e-07 57.4 74 43.2
BolC3t18939H Brassica oleracea HOM05D013399 ORTHO05D004009 5.5e-07 57.4 74 43.2
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 5.5e-07 57.4 72 44.4
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 7.2e-07 57.0 72 44.4
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 9.4e-07 56.6 74 44.6
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 1.2e-06 56.2 76 42.1
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 1.6e-06 55.8 72 38.9
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.1e-06 55.5 72 43.1
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.1e-06 55.5 80 38.8
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 2.7e-06 55.1 74 39.2
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.7e-06 55.1 74 40.5
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 6.1e-06 53.9 74 43.2
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 8.0e-06 53.5 77 44.2
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 8.0e-06 53.5 78 39.7
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 8.0e-06 53.5 71 42.3


User provided reference genes

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