Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p28600 Brassica napus HOM05D002391 ORTHO05D004870 2.7e-175 618.6 329 100.0
A07p33310 Brassica napus HOM05D002391 ORTHO05D004870 3.2e-131 472.2 302 87.4
BraA02t04916Z Brassica rapa HOM05D002391 ORTHO05D004870 2.3e-129 466.1 239 99.6
BraA02t08770Z Brassica rapa HOM05D002391 ORTHO05D004870 2.3e-129 466.1 239 99.6
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 6.6e-129 464.5 242 97.9
BraA03t14107Z Brassica rapa HOM05D002391 ORTHO05D004870 6.6e-129 464.5 242 97.9
A05p28430 Brassica napus HOM05D002391 ORTHO05D004870 1.4e-126 456.8 242 97.1
BraA05t21723Z Brassica rapa HOM05D002391 ORTHO05D004870 1.2e-125 453.8 242 96.7
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 1.1e-120 437.2 235 95.7
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 1.1e-120 437.2 235 95.7
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 1.5e-120 436.8 235 95.3
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 3.3e-120 435.6 235 95.3
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 3.3e-120 435.6 235 95.3
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 1.2e-119 433.7 235 94.9
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 8.1e-119 431.0 235 94.0
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 2.4e-118 429.5 235 93.6
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 3.1e-118 429.1 231 95.7
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 1.5e-117 426.8 235 93.2
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 8.4e-116 421.0 235 90.6
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 5.4e-115 418.3 235 90.2
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 1.9e-112 409.8 235 90.2
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 7.8e-106 387.9 236 83.1
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 1.3e-105 387.1 224 90.2
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 5.1e-105 385.2 236 82.6
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 8.7e-105 384.4 235 82.6
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 8.7e-105 384.4 235 81.7
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 1.9e-104 383.3 266 74.4
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 2.5e-104 382.9 235 82.6
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 7.3e-104 381.3 231 82.7
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 7.3e-104 381.3 235 81.3
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 9.6e-104 380.9 235 82.1
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 1.3e-103 380.6 236 81.8
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 2.1e-103 379.8 235 81.3
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 2.1e-103 379.8 235 81.7
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 2.8e-103 379.4 235 81.7
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 6.2e-103 378.3 235 79.6
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 6.2e-103 378.3 231 81.8
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 1.1e-102 377.5 236 81.4
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 1.1e-102 377.5 236 81.4
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 1.8e-102 376.7 236 80.9
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 2.4e-102 376.3 239 78.7
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 3.1e-102 375.9 239 78.2
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 4.0e-102 375.6 235 80.4
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 4.0e-102 375.6 235 80.9
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 4.0e-102 375.6 236 80.9
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 5.3e-102 375.2 235 80.0
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 5.3e-102 375.2 235 80.0
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 5.3e-102 375.2 235 80.4
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 6.9e-102 374.8 236 81.4
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 1.2e-101 374.0 235 80.0
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 1.5e-101 373.6 236 80.1
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 1.5e-101 373.6 235 79.1
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 2.0e-101 373.2 239 78.7
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 2.0e-101 373.2 239 78.7
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 2.0e-101 373.2 239 78.7
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 2.6e-101 372.9 239 79.1
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 2.6e-101 372.9 235 80.4
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 3.4e-101 372.5 239 78.7
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 4.5e-101 372.1 239 78.2
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 4.5e-101 372.1 239 78.2
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 4.5e-101 372.1 236 80.1
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 5.8e-101 371.7 235 79.6
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 3.8e-100 369.0 239 77.8
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 3.8e-100 369.0 237 79.7
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 3.8e-100 369.0 231 80.1
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 6.4e-100 368.2 239 78.2
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 8.4e-100 367.9 235 78.3
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 1.1e-99 367.5 236 78.4
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 1.9e-99 366.7 235 79.6
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 7.1e-99 364.8 235 79.1
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 9.3e-99 364.4 235 77.9
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 3.5e-98 362.5 235 77.0
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 4.6e-98 362.1 235 78.3
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 2.3e-97 359.8 239 78.7
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 2.3e-97 359.8 239 78.7
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 3.9e-97 359.0 235 76.6
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 8.7e-97 357.8 235 77.9
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 8.7e-97 357.8 239 75.7
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 8.7e-97 357.8 239 75.7
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 1.5e-96 357.1 235 77.0
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 1.9e-96 356.7 231 77.9
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 4.3e-96 355.5 235 77.4
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 4.3e-96 355.5 235 77.4
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 1.6e-95 353.6 235 76.2
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 1.6e-95 353.6 235 74.9
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 2.8e-95 352.8 235 78.3
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 6.2e-95 351.7 235 76.6
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 1.4e-94 350.5 235 77.4
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 5.3e-94 348.6 235 75.3
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 5.3e-94 348.6 230 76.5
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 9.0e-94 347.8 235 74.0
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 1.5e-93 347.1 235 74.9
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 2.0e-93 346.7 235 74.5
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 2.0e-93 346.7 235 73.6
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 4.5e-93 345.5 235 73.6
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 7.6e-93 344.7 235 75.3
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 7.6e-93 344.7 235 73.6
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 1.3e-92 344.0 235 74.9
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 1.7e-92 343.6 235 74.5
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 4.9e-92 342.0 276 68.1
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 4.9e-92 342.0 239 73.2
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 5.5e-91 338.6 235 73.6
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 9.3e-91 337.8 231 73.2
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 1.2e-90 337.4 235 73.2
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 1.6e-90 337.0 235 73.6
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 2.1e-90 336.7 235 71.1
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 6.0e-90 335.1 235 72.3
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 7.9e-90 334.7 239 71.1
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 7.9e-90 334.7 235 72.3
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 7.9e-90 334.7 235 72.3
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 3.0e-89 332.8 235 71.9
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 5.1e-89 332.0 226 74.3
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 8.7e-89 331.3 235 70.2
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 1.5e-88 330.5 235 71.5
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 4.3e-88 328.9 235 69.4
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 4.3e-88 328.9 271 66.1
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 1.1e-86 324.3 235 71.1
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 7.6e-85 318.2 239 69.5
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 2.5e-83 313.2 230 66.1
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 3.2e-83 312.8 230 66.1
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 4.2e-83 312.4 235 68.1
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 2.1e-82 310.1 235 68.5
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 7.9e-82 308.1 235 68.9
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 7.9e-82 308.1 239 67.8
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 9.7e-80 301.2 239 67.4
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 3.1e-78 296.2 235 64.3
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 1.5e-77 293.9 198 76.8
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 5.5e-75 285.4 239 64.9
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 1.0e-73 281.2 201 72.6
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 5.1e-73 278.9 234 67.1
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 9.1e-70 268.1 224 64.7
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 1.1e-67 261.2 277 50.5
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 1.2e-66 257.7 244 52.5
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 4.1e-62 242.7 189 67.2
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 1.5e-61 240.7 230 50.4
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 2.0e-61 240.4 228 59.6
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 4.5e-61 239.2 245 51.0
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 5.5e-59 232.3 149 78.5
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 1.6e-50 204.1 236 44.1
BcaC01g02750 Brassica carinata HOM05D002391 ORTHO05D004870 4.1e-38 162.9 149 67.1
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 7.0e-38 162.2 231 45.5
MD07G1159700 Malus domestica HOM05D002391 ORTHO05D004870 5.5e-35 152.5 93 81.7
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 1.6e-34 151.0 212 40.6
Actinidia33035 Actinidia chinensis HOM05D002391 ORTHO05D004870 3.4e-32 143.3 93 76.3
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 3.3e-27 126.7 141 51.8
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 8.9e-25 118.6 257 31.1
C03p60940 Brassica napus HOM05D002391 ORTHO05D004870 3.7e-23 113.2 81 77.8
BolC3t18356H Brassica oleracea HOM05D002391 ORTHO05D004870 3.7e-23 113.2 81 77.8
TPR.G25208 Trifolium pratense HOM05D002391 ORTHO05D004870 1.6e-21 107.8 82 72.0
MBI12_g48128_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 6.0e-21 105.9 71 73.2
QL11p025959 Quercus lobata HOM05D002391 ORTHO05D004870 2.0e-16 90.9 222 35.6
C01p22590 Brassica napus HOM05D011872 ORTHO05D014978 1.4e-14 84.7 59 86.4
TAR636G3264 Trochodendron aralioides HOM05D002391 ORTHO05D004870 2.4e-14 84.0 42 88.1
vmacro23330 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 2.1e-13 80.9 52 80.8
C04p40090 Brassica napus HOM05D011872 ORTHO05D014978 4.6e-13 79.7 56 78.6
BraA03t09437Z Brassica rapa HOM05D011872 ORTHO05D014978 2.3e-12 77.4 93 53.8
BcaC01g02897 Brassica carinata HOM05D011872 ORTHO05D014978 1.9e-11 74.3 47 100.0
BolC2t11060H Brassica oleracea HOM05D011872 ORTHO05D014978 1.9e-11 74.3 47 100.0
BolC3t18123H Brassica oleracea HOM05D011872 ORTHO05D014978 1.9e-11 74.3 47 100.0
BcaC07g39239 Brassica carinata HOM05D011872 ORTHO05D014978 7.3e-11 72.4 47 80.9
BcaC09g50642 Brassica carinata HOM05D011872 ORTHO05D014978 1.2e-10 71.6 47 91.5
C02p27780 Brassica napus HOM05D011872 ORTHO05D014978 2.8e-10 70.5 55 81.8
BolC4t25585H Brassica oleracea HOM05D011872 ORTHO05D014978 1.8e-09 67.8 48 79.2
BraA04t18503Z Brassica rapa HOM05D011872 ORTHO05D014978 1.8e-09 67.8 47 78.7
BraA07t29683Z Brassica rapa HOM05D011872 ORTHO05D014978 1.8e-09 67.8 47 78.7
DCAR_022118 Daucus carota HOM05D002391 ORTHO05D004870 5.2e-09 66.2 61 57.4
BcaB02g11388 Brassica carinata HOM05D011872 ORTHO05D014978 1.9e-06 57.8 44 86.4


User provided reference genes

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