Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 9.7e-153 543.5 285 100.0
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.4e-151 539.7 285 99.3
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 2.9e-149 531.9 285 97.5
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 2.9e-149 531.9 285 97.5
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 2.9e-149 531.9 285 97.5
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 4.7e-147 524.6 285 96.1
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.2e-144 515.8 285 93.7
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.3e-141 506.5 285 91.9
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.3e-141 506.5 285 91.9
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.3e-141 506.5 285 91.9
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 8.5e-141 503.8 285 89.8
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 5.5e-140 501.1 285 89.5
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 3.6e-139 498.4 285 90.5
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 3.9e-138 495.0 285 89.8
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 7.4e-137 490.7 285 88.4
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 3.1e-135 485.3 284 89.8
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 2.6e-134 482.3 285 86.3
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 3.8e-133 478.4 277 87.7
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 2.0e-118 429.5 286 78.0
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 9.8e-105 384.0 251 80.9
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 2.2e-104 382.9 285 71.6
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 4.9e-104 381.7 285 71.2
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.2e-103 379.0 285 71.9
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 5.4e-103 378.3 285 71.6
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.0e-102 376.3 285 71.2
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 7.8e-102 374.4 285 70.2
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.7e-101 373.2 282 69.5
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.1e-100 370.5 288 67.7
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.5e-100 370.2 277 70.8
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 3.3e-100 369.0 289 67.8
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 4.7e-99 365.2 280 69.3
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 6.2e-99 364.8 285 67.4
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 6.2e-99 364.8 280 68.9
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 6.2e-99 364.8 286 68.2
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 1.4e-98 363.6 257 73.2
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 3.1e-98 362.5 280 68.6
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 4.0e-98 362.1 285 67.7
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 5.2e-98 361.7 285 67.0
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 8.9e-98 360.9 286 64.7
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 9.8e-97 357.5 273 69.6
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 2.2e-96 356.3 284 65.5
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 4.9e-96 355.1 284 65.8
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 4.9e-96 355.1 286 66.8
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 8.3e-96 354.4 284 65.5
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.9e-95 353.2 285 66.7
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 1.9e-95 353.2 286 67.1
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 2.4e-95 352.8 278 67.6
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 3.2e-95 352.4 284 64.4
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 4.1e-95 352.1 284 64.4
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 4.1e-95 352.1 284 65.8
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 7.0e-95 351.3 285 66.3
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 9.2e-95 350.9 286 66.8
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.2e-94 350.5 283 67.1
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 2.1e-94 349.7 281 65.8
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 2.7e-94 349.4 285 65.6
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 2.7e-94 349.4 285 65.6
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.5e-94 349.0 287 65.9
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 4.6e-94 348.6 287 65.2
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 4.6e-94 348.6 282 65.2
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 4.6e-94 348.6 276 66.7
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 4.6e-94 348.6 285 64.6
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 7.8e-94 347.8 287 65.5
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.7e-93 346.7 284 65.1
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.9e-93 345.5 271 68.6
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 6.6e-93 344.7 285 66.3
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 1.5e-92 343.6 280 65.7
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.5e-92 343.6 287 65.2
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 2.5e-92 342.8 281 64.4
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 3.3e-92 342.4 278 65.1
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 3.3e-92 342.4 287 64.5
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 3.3e-92 342.4 287 63.8
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 4.3e-92 342.0 287 64.5
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 5.6e-92 341.7 271 67.9
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 5.6e-92 341.7 245 71.8
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 5.6e-92 341.7 293 62.5
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 5.6e-92 341.7 278 65.5
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 7.3e-92 341.3 277 65.7
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 9.5e-92 340.9 286 64.0
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.2e-91 340.5 243 72.8
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.2e-91 340.5 290 63.4
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.1e-91 339.7 227 76.7
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 2.8e-91 339.3 284 63.4
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 2.8e-91 339.3 277 65.3
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 3.6e-91 339.0 286 65.4
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.7e-91 338.6 244 71.3
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 4.7e-91 338.6 283 65.0
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 8.1e-91 337.8 276 63.8
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.3e-90 336.3 266 67.3
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.0e-90 335.5 296 63.5
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 5.2e-90 335.1 293 60.8
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 2.6e-89 332.8 293 61.1
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 7.5e-89 331.3 282 62.8
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 7.5e-89 331.3 285 63.5
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 3.7e-88 328.9 321 58.6
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 2.4e-87 326.2 285 63.2
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 3.2e-87 325.9 226 71.2
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.1e-87 325.5 281 62.6
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 9.2e-87 324.3 278 63.3
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.6e-86 323.6 226 70.8
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 2.7e-86 322.8 277 65.0
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 6.0e-86 321.6 216 75.5
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.3e-85 320.5 287 61.3
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 3.0e-85 319.3 281 61.6
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 6.6e-85 318.2 246 67.5
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.5e-84 317.0 284 60.9
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 8.1e-83 311.2 291 61.2
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 6.8e-82 308.1 253 63.6
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.2e-81 307.4 273 61.5
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 1.2e-81 307.4 276 61.6
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.2e-80 303.1 283 61.1
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 6.4e-80 301.6 228 69.3
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 4.6e-78 295.4 241 63.1
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.1e-76 290.8 233 62.7
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.6e-75 287.0 283 56.5
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.6e-75 287.0 234 64.5
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 4.7e-75 285.4 234 64.5
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 7.6e-73 278.1 284 56.0
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 3.5e-70 269.2 215 67.0
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 8.7e-69 264.6 302 46.7
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 5.6e-68 261.9 289 50.9
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 2.8e-67 259.6 237 57.0
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 8.1e-67 258.1 260 52.7
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-59 233.8 197 54.8
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.4e-58 230.7 197 54.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.8e-58 230.3 197 53.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.0e-58 229.2 197 53.8
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.2e-56 223.4 210 59.0
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 9.6e-52 208.0 150 68.7
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 4.8e-51 205.7 271 48.3
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.5e-49 199.1 136 72.8
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.6e-49 198.4 137 73.7
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.4e-48 194.9 197 48.7
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.4e-47 194.1 243 50.6
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.5e-47 193.4 211 53.6
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-44 184.5 224 49.6
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.0e-37 161.4 171 53.8
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 1.3e-35 154.5 100 79.0
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 1.3e-35 154.5 100 79.0
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-35 152.1 178 47.2
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.5e-31 139.0 182 41.2
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 2.6e-28 130.2 90 73.3
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 7.4e-28 128.6 118 59.3
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.3e-27 127.9 199 36.7
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 5.0e-24 115.9 225 33.8
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 1.1e-23 114.8 76 72.4
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.4e-23 111.7 206 39.3
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.0e-22 108.6 190 42.1
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 8.0e-22 108.6 217 31.3
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.1e-18 96.3 63 71.4
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 5.3e-18 95.9 51 88.2
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-17 93.6 60 70.0
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.5e-17 93.2 60 70.0
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 7.7e-17 92.0 91 50.5
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.9e-16 90.1 60 68.3
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.6e-14 83.2 66 62.1
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 1.8e-13 80.9 90 52.2
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 1.5e-12 77.8 59 69.5
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 1.5e-12 77.8 59 69.5
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.5e-12 75.5 53 66.0
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 1.7e-11 74.3 61 63.9
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 4.5e-09 66.2 44 75.0
BraA03t14352Z Brassica rapa HOM05D004641 ORTHO05D022007 1.7e-08 64.3 46 69.6


User provided reference genes

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