Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p26630 Brassica napus HOM05D002671 ORTHO05D002985 8.0e-154 547.4 340 100.0
BcaC01g01653 Brassica carinata HOM05D002671 ORTHO05D002985 1.8e-129 466.5 361 82.0
Thhalv10006977m.g Eutrema salsugineum HOM05D002671 ORTHO05D002985 3.3e-123 445.7 371 80.1
Sp1g23230 Schrenkiella parvula HOM05D002671 ORTHO05D002985 3.3e-123 445.7 371 80.3
AL1G40370 Arabidopsis lyrata HOM05D002671 ORTHO05D002985 2.1e-122 443.0 371 80.1
BcaC05g26706 Brassica carinata HOM05D002671 ORTHO05D002985 2.0e-120 436.4 371 79.0
Carub.0001s2555 Capsella rubella HOM05D002671 ORTHO05D002985 2.6e-120 436.0 371 78.4
AT1G24560 Arabidopsis thaliana HOM05D002671 ORTHO05D002985 9.9e-120 434.1 371 79.0
CARHR026530 Cardamine hirsuta HOM05D002671 ORTHO05D002985 4.9e-119 431.8 371 77.6
C03p73360 Brassica napus HOM05D002671 ORTHO05D002985 3.3e-115 419.1 361 73.4
BolC3t19633H Brassica oleracea HOM05D002671 ORTHO05D002985 6.2e-114 414.8 361 79.2
Aa31LG7G9490 Aethionema arabicum HOM05D002671 ORTHO05D002985 4.4e-112 408.7 371 74.7
BraA09t39395Z Brassica rapa HOM05D002671 ORTHO05D002985 1.1e-110 404.1 371 76.3
C05p25600 Brassica napus HOM05D002671 ORTHO05D002985 1.9e-110 403.3 371 76.3
BolC5t31288H Brassica oleracea HOM05D002671 ORTHO05D002985 3.2e-110 402.5 371 76.3
BcaC05g26511 Brassica carinata HOM05D002671 ORTHO05D002985 1.2e-109 400.6 362 77.1
A09p38880 Brassica napus HOM05D002671 ORTHO05D002985 3.5e-109 399.1 372 75.8
THA.LOC104825550 Tarenaya hassleriana HOM05D002671 ORTHO05D002985 1.0e-100 370.9 366 71.0
Thecc.02G264600 Theobroma cacao HOM05D002671 ORTHO05D002985 7.6e-88 328.2 368 56.5
Dinv11046 Davidia involucrata HOM05D002671 ORTHO05D002985 6.5e-87 325.1 371 53.4
Duzib251G0500 Durio zibethinus HOM05D002671 ORTHO05D002985 4.2e-86 322.4 371 55.8
COL.COLO4_23496 Corchorus olitorius HOM05D002671 ORTHO05D002985 5.5e-86 322.0 371 59.8
CiPaw.05G177900 Carya illinoinensis HOM05D002671 ORTHO05D002985 2.1e-85 320.1 371 51.8
Dinv15205 Davidia involucrata HOM05D002671 ORTHO05D002985 2.1e-85 320.1 371 52.8
Dinv14743 Davidia involucrata HOM05D002671 ORTHO05D002985 1.0e-84 317.8 372 53.0
CSS0043891 Camellia sinensis var. sinensis HOM05D002671 ORTHO05D002985 8.7e-84 314.7 374 60.4
Cfa009242 Carpinus fangiana HOM05D002671 ORTHO05D002985 1.9e-83 313.5 372 54.3
Prupe.1G242200 Prunus persica HOM05D002671 ORTHO05D002985 5.7e-83 312.0 372 57.0
MELO3C026691.2 Cucumis melo HOM05D002671 ORTHO05D002985 2.1e-82 310.1 370 58.9
Sabra08G0139900 Salix brachista HOM05D002671 ORTHO05D002985 2.1e-82 310.1 371 58.5
ClCG11G000520 Citrullus lanatus HOM05D002671 ORTHO05D002985 6.2e-82 308.5 370 55.9
Ciclev10030886m.g Citrus clementina HOM05D002671 ORTHO05D002985 6.2e-82 308.5 372 52.7
Gorai.005G175900 Gossypium raimondii HOM05D002671 ORTHO05D002985 6.2e-82 308.5 364 56.9
TWI18G0350 Tripterygium wilfordii HOM05D002671 ORTHO05D002985 1.1e-81 307.8 371 59.0
Actinidia15110 Actinidia chinensis HOM05D002671 ORTHO05D002985 1.4e-81 307.4 372 51.9
Haze_12277 Corylus avellana HOM05D002671 ORTHO05D002985 1.4e-81 307.4 364 51.1
Gohir.D02G156800 Gossypium hirsutum HOM05D002671 ORTHO05D002985 3.1e-81 306.2 364 56.6
Hund06043 Selenicereus undatus HOM05D002671 ORTHO05D002985 3.1e-81 306.2 370 58.9
Potri.008G183800 Populus trichocarpa HOM05D002671 ORTHO05D002985 4.1e-81 305.8 371 58.0
Gohir.A03G132500 Gossypium hirsutum HOM05D002671 ORTHO05D002985 2.0e-80 303.5 365 55.1
MD13G1104300 Malus domestica HOM05D002671 ORTHO05D002985 2.0e-80 303.5 371 57.1
Manes.13G021100 Manihot esculenta HOM05D002671 ORTHO05D002985 2.0e-80 303.5 371 56.9
Hma1.2p1_0815F.1_g222740 Hydrangea macrophylla HOM05D002671 ORTHO05D002985 3.4e-80 302.8 361 52.4
Potri.010G049400 Populus trichocarpa HOM05D002671 ORTHO05D002985 4.5e-80 302.4 371 56.9
GSVIVG01000568001 Vitis vinifera HOM05D002671 ORTHO05D002985 7.6e-80 301.6 370 50.8
Hund25403 Selenicereus undatus HOM05D002671 ORTHO05D002985 1.0e-79 301.2 371 53.9
Actinidia37449 Actinidia chinensis HOM05D002671 ORTHO05D002985 1.3e-79 300.8 374 58.8
Rhsim12G0108100 Rhododendron simsii HOM05D002671 ORTHO05D002985 2.5e-78 296.6 375 57.3
Sed0000402 Sechium edule HOM05D002671 ORTHO05D002985 5.5e-78 295.4 370 57.6
AUR62005509 Chenopodium quinoa HOM05D002671 ORTHO05D002985 7.1e-78 295.0 371 55.0
Lj6C815T10 Lonicera japonica HOM05D002671 ORTHO05D002985 9.3e-78 294.7 370 56.2
PGR119G2294 Punica granatum HOM05D002671 ORTHO05D002985 9.3e-78 294.7 371 56.1
Sc11g0000860 Simmondsia chinensis HOM05D002671 ORTHO05D002985 9.3e-78 294.7 370 47.6
TAR622G0609 Trochodendron aralioides HOM05D002671 ORTHO05D002985 9.3e-78 294.7 371 48.0
Ah.03g133430 Amaranthus hybridus HOM05D002671 ORTHO05D002985 3.5e-77 292.7 371 54.7
Sabra10G0019900 Salix brachista HOM05D002671 ORTHO05D002985 3.5e-77 292.7 371 50.7
AUR62024233 Chenopodium quinoa HOM05D002671 ORTHO05D002985 1.8e-76 290.4 371 55.0
Nn3g16663 Nelumbo nucifera HOM05D002671 ORTHO05D002985 8.7e-76 288.1 372 47.6
Cpa.g.sc33.60 Carica papaya HOM05D002671 ORTHO05D002985 1.5e-75 287.3 364 49.2
FvH4_4g25380 Fragaria vesca HOM05D002671 ORTHO05D002985 1.9e-75 287.0 369 49.3
TWI75G0863 Tripterygium wilfordii HOM05D002671 ORTHO05D002985 2.5e-75 286.6 371 56.6
vmacro16176 Vaccinium macrocarpon HOM05D002671 ORTHO05D002985 1.3e-74 284.3 374 48.7
Cc11_g16020 Coffea canephora HOM05D002671 ORTHO05D002985 2.2e-74 283.5 371 51.5
EL10As2g23157 Beta vulgaris HOM05D002671 ORTHO05D002985 2.8e-74 283.1 371 53.6
FAN22G0767 Fragaria x ananassa HOM05D002671 ORTHO05D002985 3.7e-74 282.7 365 49.0
CsaV3_5G014120 Cucumis sativus L. HOM05D002671 ORTHO05D002985 4.8e-74 282.3 370 56.2
FAN12G2420 Fragaria x ananassa HOM05D002671 ORTHO05D002985 4.8e-74 282.3 367 49.0
FAN17G0571 Fragaria x ananassa HOM05D002671 ORTHO05D002985 4.8e-74 282.3 365 49.0
MD16G1104400 Malus domestica HOM05D002671 ORTHO05D002985 6.3e-74 282.0 348 56.3
FAN07G0443 Fragaria x ananassa HOM05D002671 ORTHO05D002985 8.2e-74 281.6 362 49.4
Lj3C1061T13 Lonicera japonica HOM05D002671 ORTHO05D002985 6.9e-73 278.5 370 50.8
Nn4g22554 Nelumbo nucifera HOM05D002671 ORTHO05D002985 2.6e-72 276.6 372 52.4
TPR.G6192 Trifolium pratense HOM05D002671 ORTHO05D002985 3.4e-72 276.2 374 49.2
Migut.K00624 Erythranthe guttata HOM05D002671 ORTHO05D002985 7.7e-72 275.0 371 48.2
Oeu031875.1 Olea europaea HOM05D002671 ORTHO05D002985 7.7e-72 275.0 365 47.7
Oeu031876.1 Olea europaea HOM05D002671 ORTHO05D002985 7.7e-72 275.0 365 47.7
Glyma.05G173600 Glycine max HOM05D002671 ORTHO05D002985 1.0e-71 274.6 370 48.1
Psat7g058840 Pisum sativum HOM05D002671 ORTHO05D002985 1.0e-71 274.6 374 48.7
PGSC0003DMG400011723 Solanum tuberosum HOM05D002671 ORTHO05D002985 1.0e-71 274.6 369 53.4
PSO063G0918 Papaver somniferum HOM05D002671 ORTHO05D002985 1.3e-71 274.2 371 47.7
arahy.Tifrunner.gnm1.ann1.91SUEF Arachis hypogaea HOM05D002671 ORTHO05D002985 2.2e-71 273.5 371 54.7
CSS0022437 Camellia sinensis var. sinensis HOM05D002671 ORTHO05D002985 2.2e-71 273.5 369 54.2
VMungo0251G3376 Vigna mungo HOM05D002671 ORTHO05D002985 5.0e-71 272.3 370 47.8
QL03p056617 Quercus lobata HOM05D002671 ORTHO05D002985 6.5e-71 271.9 371 52.6
CANSAT01G2908 Cannabis sativa HOM05D002671 ORTHO05D002985 8.5e-71 271.6 371 54.2
Phvul.002G258700 Phaseolus vulgaris HOM05D002671 ORTHO05D002985 8.5e-71 271.6 370 47.6
SalBow2G2458 Salvia bowleyana HOM05D002671 ORTHO05D002985 8.5e-71 271.6 370 46.5
Nitab4.5_0000524g0040 Nicotiana tabacum HOM05D002671 ORTHO05D002985 1.4e-70 270.8 377 49.9
SGA_v2.0_scaffold100G29580 Striga asiatica HOM05D002671 ORTHO05D002985 3.2e-70 269.6 359 48.7
Manes.12G020500 Manihot esculenta HOM05D002671 ORTHO05D002985 7.2e-70 268.5 368 51.4
Sopen05g008700 Solanum pennellii HOM05D002671 ORTHO05D002985 7.2e-70 268.5 370 48.6
Glyma.08G130900 Glycine max HOM05D002671 ORTHO05D002985 9.4e-70 268.1 370 47.3
RcHm_v2.0_Chr4g0432671 Rosa chinensis HOM05D002671 ORTHO05D002985 1.6e-69 267.3 365 48.5
PSO754G0096 Papaver somniferum HOM05D002671 ORTHO05D002985 4.6e-69 265.8 371 46.6
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 6.1e-69 265.4 373 47.7
Lj4g0010011 Lotus japonicus HOM05D002671 ORTHO05D002985 7.9e-69 265.0 370 46.5
Lsat_1_v5_gn_3_30180 Lactuca sativa HOM05D002671 ORTHO05D002985 1.0e-68 264.6 356 54.8
Solyc05g013780.3 Solanum lycopersicum HOM05D002671 ORTHO05D002985 1.4e-68 264.2 370 52.7
Ca_17787_v3 Cicer arietinum L. HOM05D002671 ORTHO05D002985 5.1e-68 262.3 370 46.8
HanXRQChr17g0539881 Helianthus annuus HOM05D002671 ORTHO05D002985 6.7e-68 261.9 370 51.1
Medtr8g089685 Medicago truncatula HOM05D002671 ORTHO05D002985 1.1e-67 261.2 368 47.8
arahy.Tifrunner.gnm1.ann1.48P4SG Arachis hypogaea HOM05D002671 ORTHO05D002985 2.5e-67 260.0 371 53.6
Oeu057550.2 Olea europaea HOM05D002671 ORTHO05D002985 4.3e-67 259.2 358 46.9
HanXRQChr08g0208411 Helianthus annuus HOM05D002671 ORTHO05D002985 5.7e-67 258.8 369 46.1
MSTRG.554 Avicennia marina HOM05D002671 ORTHO05D002985 1.3e-66 257.7 371 46.9
DCAR_007040 Daucus carota HOM05D002671 ORTHO05D002985 1.7e-66 257.3 371 44.7
Eucgr.H02469 Eucalyptus grandis HOM05D002671 ORTHO05D002985 2.2e-66 256.9 371 51.2
DCAR_031168 Daucus carota HOM05D002671 ORTHO05D002985 1.4e-65 254.2 374 50.0
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 3.1e-65 253.1 371 46.1
Aqoxy3G01279 Aquilegia oxysepala HOM05D002671 ORTHO05D002985 4.1e-65 252.7 360 51.1
TAR374G0570 Trochodendron aralioides HOM05D002671 ORTHO05D002985 9.1e-65 251.5 262 54.2
CAN.G436.2 Capsicum annuum HOM05D002671 ORTHO05D002985 2.0e-64 250.4 369 50.1
MBI06_g16051_MAGBIO Magnolia biondii HOM05D002671 ORTHO05D002985 2.0e-64 250.4 373 43.7
Lalb_Chr12g0204071 Lupinus albus HOM05D002671 ORTHO05D002985 7.7e-64 248.4 371 47.7
Lsat_1_v5_gn_8_152881 Lactuca sativa HOM05D002671 ORTHO05D002985 6.5e-63 245.4 348 52.3
Lalb_Chr07g0185491 Lupinus albus HOM05D002671 ORTHO05D002985 8.5e-63 245.0 371 48.5
HPP92_024523 Vanilla planifolia HOM05D002671 ORTHO05D002985 3.6e-61 239.6 362 43.9
CDE02G0412 Ceratophyllum demersum HOM05D002671 ORTHO05D002985 6.7e-60 235.3 374 43.6
Peaxi162Scf00128g00052 Petunia axillaris HOM05D002671 ORTHO05D002985 1.7e-58 230.7 353 45.9
ATR0199G036 Amborella trichopoda HOM05D002671 ORTHO05D002985 6.3e-58 228.8 380 43.4
SHI17835 Sapria himalayana HOM05D002671 ORTHO05D002985 1.1e-57 228.0 263 51.0
Atru.chr11.2170 Acer truncatum HOM05D002671 ORTHO05D002985 4.5e-56 222.6 295 49.2
EL10Ac6g13886 Beta vulgaris HOM05D002671 ORTHO05D002985 4.0e-44 183.0 307 47.2
SEGI_37581 Sequoiadendron giganteum HOM05D002671 ORTHO05D002985 5.7e-43 179.1 365 36.7
CDE09G0733 Ceratophyllum demersum HOM05D002671 ORTHO05D002985 9.8e-43 178.3 360 37.8
Actinidia29450 Actinidia chinensis HOM05D002671 ORTHO05D002985 1.8e-41 174.1 185 68.1
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 1.6e-40 171.0 338 38.8
Zm00001eb096260 Zea mays HOM05D002671 ORTHO05D002985 2.0e-40 170.6 361 34.6
Zm00001eb306940 Zea mays HOM05D002671 ORTHO05D002985 2.2e-39 167.2 362 34.5
Os09g0565400 Oryza sativa ssp. japonica HOM05D002671 ORTHO05D002985 4.2e-38 162.9 364 34.6
BcaB03g12054 Brassica carinata HOM05D002671 ORTHO05D002985 1.6e-32 144.4 88 90.9
SMO145G0099 Selaginella moellendorffii HOM05D002671 ORTHO05D002985 4.1e-17 93.2 343 25.9
Potri.008G184600 Populus trichocarpa HOM05D002671 ORTHO05D002985 1.2e-16 91.7 141 45.4
Aqoxy5G03692 Aquilegia oxysepala HOM05D002671 ORTHO05D002985 2.9e-10 70.5 117 32.5
Pp3c19_17030 Physcomitrium patens HOM05D002671 ORTHO05D002985 2.9e-10 70.5 343 27.7
Mapoly0059s0041 Marchantia polymorpha HOM05D002671 ORTHO05D002985 2.5e-06 57.4 263 27.0


User provided reference genes

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