Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 3.2e-201 704.9 364 100.0
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 5.3e-196 687.6 364 98.1
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 1.4e-185 652.9 365 92.3
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.4e-185 652.9 365 92.3
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.7e-162 576.2 332 90.4
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.8e-148 529.6 369 77.5
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 2.3e-146 522.7 358 78.2
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.1e-144 516.2 359 77.7
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 4.4e-142 508.4 360 77.2
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 4.4e-142 508.4 359 76.9
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 2.9e-141 505.8 359 76.6
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 8.3e-141 504.2 373 72.1
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 1.9e-140 503.1 380 73.7
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 4.1e-140 501.9 377 71.4
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 1.6e-139 500.0 359 73.3
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 2.0e-139 499.6 369 71.5
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 1.1e-124 450.7 374 66.8
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 1.6e-107 393.7 298 75.5
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 2.1e-104 383.3 372 59.7
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 5.6e-97 358.6 360 57.8
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.6e-88 330.5 383 53.5
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 2.5e-84 316.6 372 50.5
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 5.5e-84 315.5 367 50.4
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 2.1e-83 313.5 238 76.5
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 2.1e-83 313.5 369 50.9
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 3.9e-82 309.3 367 49.3
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 6.7e-82 308.5 378 50.5
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 1.1e-81 307.8 367 49.0
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.2e-78 297.7 381 47.8
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 2.6e-78 296.6 370 48.1
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 1.0e-77 294.7 386 45.3
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.0e-77 294.7 388 45.6
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 1.7e-77 293.9 370 47.6
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.7e-77 293.9 380 46.3
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 3.8e-77 292.7 380 48.4
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.8e-77 292.7 384 45.3
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 2.5e-76 290.0 368 48.9
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 2.5e-76 290.0 367 51.0
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 5.5e-76 288.9 381 45.4
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 7.2e-76 288.5 346 49.1
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 9.4e-76 288.1 370 47.0
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 1.6e-75 287.3 360 47.5
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.1e-75 287.0 377 48.5
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 4.6e-75 285.8 368 48.6
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.4e-74 284.3 377 48.3
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.3e-74 283.5 384 44.3
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 2.3e-74 283.5 395 44.1
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 3.9e-74 282.7 370 48.1
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 8.8e-74 281.6 375 47.2
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 2.0e-73 280.4 371 46.4
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 4.3e-73 279.3 360 50.0
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 5.7e-73 278.9 345 47.2
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 1.3e-72 277.7 365 46.3
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 1.8e-71 273.9 369 46.1
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.4e-71 273.5 360 46.7
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.4e-71 273.5 360 46.7
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.4e-71 273.5 364 46.2
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 9.1e-71 271.6 388 45.6
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 3.4e-70 269.6 344 49.4
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.3e-69 267.7 352 48.3
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 2.5e-68 263.5 133 91.7
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 3.2e-68 263.1 365 43.0
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 7.2e-68 261.9 395 45.8
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 6.1e-67 258.8 362 45.6
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 1.4e-66 257.7 369 45.0
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 1.3e-64 251.1 359 45.4
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 1.7e-64 250.8 385 43.6
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 3.7e-64 249.6 346 44.2
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 6.3e-64 248.8 342 45.6
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.1e-63 248.1 351 44.7
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 1.8e-63 247.3 344 45.6
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 4.1e-63 246.1 351 46.2
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 2.0e-62 243.8 334 46.1
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 2.6e-62 243.4 359 44.6
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 2.6e-62 243.4 358 44.1
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 2.6e-62 243.4 352 44.9
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 3.5e-62 243.0 352 44.9
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 4.5e-62 242.7 440 37.5
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 5.0e-61 239.2 350 42.9
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 1.5e-60 237.7 350 41.4
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.5e-60 236.9 339 43.7
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 4.2e-60 236.1 346 44.5
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.2e-59 234.6 350 42.3
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.5e-57 227.6 371 38.3
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.3e-56 224.6 354 42.7
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 2.8e-56 223.4 353 42.2
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 1.1e-55 221.5 353 41.4
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 7.0e-55 218.8 409 38.1
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 1.6e-54 217.6 324 42.9
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 1.0e-53 214.9 422 36.5
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 2.9e-53 213.4 350 40.9
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.9e-52 210.7 236 53.0
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 3.2e-52 209.9 346 40.5
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 7.2e-52 208.8 379 37.5
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 9.4e-52 208.4 344 40.7
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 3.6e-51 206.5 366 39.6
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 3.0e-50 203.4 345 40.3
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 5.2e-50 202.6 382 39.0
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 1.2e-49 201.4 339 38.3
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.3e-48 198.0 364 38.5
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 2.7e-46 190.3 213 49.8
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 2.7e-46 190.3 346 38.7
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 2.9e-45 186.8 348 37.9
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.5e-44 184.5 359 39.0
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 4.7e-43 179.5 371 38.3
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 1.0e-42 178.3 376 33.2
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 1.8e-42 177.6 350 34.3
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.8e-42 177.6 335 38.2
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 3.4e-41 173.3 354 35.6
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.3e-40 171.4 182 49.5
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 4.1e-39 166.4 182 48.4
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 4.1e-39 166.4 355 33.2
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 7.0e-39 165.6 208 45.7
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 9.1e-39 165.2 208 45.7
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 1.6e-38 164.5 182 47.8
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 2.1e-35 154.1 339 31.6
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 4.7e-35 152.9 359 32.6
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 3.0e-34 150.2 335 33.7
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 4.0e-34 149.8 93 77.4
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 6.8e-34 149.1 341 33.7
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 6.8e-34 149.1 334 34.7
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 1.8e-31 141.0 209 41.1
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 7.0e-31 139.0 186 43.0
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 8.6e-29 132.1 294 35.4
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 4.9e-24 116.3 343 31.2
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 4.1e-23 113.2 129 54.3
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 3.5e-22 110.2 183 41.5
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 8.1e-19 99.0 103 59.2
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 8.3e-16 89.0 155 35.5
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 6.0e-14 82.8 120 45.8
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 7.8e-14 82.4 156 37.2
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 7.8e-14 82.4 157 38.2
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.5e-12 78.2 161 29.2
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 3.3e-12 77.0 345 26.1
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.2e-11 75.1 341 26.1
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 4.7e-11 73.2 158 28.5
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.1e-11 72.4 158 27.8
BolC3t19673H Brassica oleracea HOM05D005715 ORTHO05D007160 4.0e-10 70.1 40 95.0
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.5e-09 68.2 171 27.5
TAR371G0269 Trochodendron aralioides HOM05D001735 ORTHO05D001640 7.8e-06 55.8 214 23.8


User provided reference genes

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