Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p25910 Brassica napus HOM05D003399 ORTHO05D003393 1.6e-48 195.7 95 100.0
BraA08t34543Z Brassica rapa HOM05D003399 ORTHO05D003393 4.0e-26 121.3 60 98.3
Sp1g24260 Schrenkiella parvula HOM05D003399 ORTHO05D003393 5.7e-25 117.5 60 95.0
C03p74730 Brassica napus HOM05D003399 ORTHO05D003393 1.7e-24 115.9 60 93.3
BcaC05g26811 Brassica carinata HOM05D003399 ORTHO05D003393 4.5e-22 107.8 58 89.7
C07p17320 Brassica napus HOM05D003399 ORTHO05D003393 4.5e-22 107.8 60 86.7
BolC7t42236H Brassica oleracea HOM05D003399 ORTHO05D003393 4.5e-22 107.8 60 86.7
Thhalv10009364m.g Eutrema salsugineum HOM05D003399 ORTHO05D003393 7.7e-22 107.1 64 87.5
A09p38010 Brassica napus HOM05D003399 ORTHO05D003393 3.8e-21 104.8 58 87.9
BraA09t39311Z Brassica rapa HOM05D003399 ORTHO05D003393 3.8e-21 104.8 58 87.9
BcaC05g26625 Brassica carinata HOM05D003399 ORTHO05D003393 1.1e-20 103.2 58 86.2
C05p26750 Brassica napus HOM05D003399 ORTHO05D003393 1.1e-20 103.2 58 86.2
Carub.0001s2651 Capsella rubella HOM05D003399 ORTHO05D003393 7.2e-20 100.5 61 78.7
AL1G41600 Arabidopsis lyrata HOM05D003399 ORTHO05D003393 9.4e-20 100.1 59 84.7
CARHR200200 Cardamine hirsuta HOM05D003399 ORTHO05D003393 3.1e-15 85.1 58 65.5
AT5G13250 Arabidopsis thaliana HOM05D003399 ORTHO05D003393 5.4e-15 84.3 59 62.7
Carub.0006s1142 Capsella rubella HOM05D003399 ORTHO05D003393 3.5e-14 81.6 60 63.3
Sp6g30740 Schrenkiella parvula HOM05D003399 ORTHO05D003393 3.5e-14 81.6 58 60.3
A10p24960 Brassica napus HOM05D003399 ORTHO05D003393 5.9e-14 80.9 60 63.3
C09p63830 Brassica napus HOM05D003399 ORTHO05D003393 5.9e-14 80.9 60 63.3
BolC9t59223H Brassica oleracea HOM05D003399 ORTHO05D003393 5.9e-14 80.9 60 63.3
BraA10t44558Z Brassica rapa HOM05D003399 ORTHO05D003393 5.9e-14 80.9 60 63.3
THA.LOC104807363 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 5.9e-14 80.9 61 62.3
BraA02t05155Z Brassica rapa HOM05D003399 ORTHO05D003393 1.3e-13 79.7 59 59.3
Potri.001G062700 Populus trichocarpa HOM05D003399 ORTHO05D003393 1.3e-13 79.7 60 63.3
C03p06820 Brassica napus HOM05D003399 ORTHO05D003393 2.9e-13 78.6 60 60.0
BolC3t13193H Brassica oleracea HOM05D003399 ORTHO05D003393 2.9e-13 78.6 60 60.0
THA.LOC104820532 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 2.9e-13 78.6 61 62.3
Potri.003G164800 Populus trichocarpa HOM05D003399 ORTHO05D003393 3.8e-13 78.2 60 61.7
TWI36G0503 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 3.8e-13 78.2 60 61.7
Atru.chr11.2413 Acer truncatum HOM05D003399 ORTHO05D003393 8.6e-13 77.0 60 61.7
QL03p050027 Quercus lobata HOM05D003399 ORTHO05D003393 8.6e-13 77.0 59 61.0
THA.LOC104814204 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 8.6e-13 77.0 63 63.5
TAR374G0208 Trochodendron aralioides HOM05D003399 ORTHO05D003393 8.6e-13 77.0 60 68.3
Phvul.008G018800 Phaseolus vulgaris HOM05D003399 ORTHO05D003393 1.5e-12 76.3 59 66.1
Nn4g22186 Nelumbo nucifera HOM05D003399 ORTHO05D003393 1.9e-12 75.9 56 66.1
arahy.Tifrunner.gnm1.ann1.FX1Z4A Arachis hypogaea HOM05D003399 ORTHO05D003393 2.5e-12 75.5 58 58.6
arahy.Tifrunner.gnm1.ann1.ULYV8E Arachis hypogaea HOM05D003399 ORTHO05D003393 2.5e-12 75.5 58 58.6
A03p05900 Brassica napus HOM05D003399 ORTHO05D003393 2.5e-12 75.5 60 56.7
C02p06020 Brassica napus HOM05D003399 ORTHO05D003393 2.5e-12 75.5 58 58.6
BolC2t06544H Brassica oleracea HOM05D003399 ORTHO05D003393 2.5e-12 75.5 58 58.6
BraA03t09928Z Brassica rapa HOM05D003399 ORTHO05D003393 2.5e-12 75.5 60 56.7
TPR.G2909 Trifolium pratense HOM05D003399 ORTHO05D003393 2.5e-12 75.5 60 58.3
TAR622G1322 Trochodendron aralioides HOM05D003399 ORTHO05D003393 2.5e-12 75.5 60 66.7
GSVIVG01000970001 Vitis vinifera HOM05D003399 ORTHO05D003393 3.2e-12 75.1 60 60.0
Duzib248G1620 Durio zibethinus HOM05D003399 ORTHO05D003393 5.5e-12 74.3 60 60.0
Dinv12132 Davidia involucrata HOM05D003399 ORTHO05D003393 7.2e-12 73.9 60 58.3
Duzib052G0315 Durio zibethinus HOM05D003399 ORTHO05D003393 7.2e-12 73.9 60 60.0
ClCG07G011820 Citrullus lanatus HOM05D003399 ORTHO05D003393 9.5e-12 73.6 57 63.2
Manes.08G102600 Manihot esculenta HOM05D003399 ORTHO05D003393 9.5e-12 73.6 58 58.6
TWI18G1150 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 1.2e-11 73.2 60 58.3
Glyma.18G282500 Glycine max HOM05D003399 ORTHO05D003393 1.6e-11 72.8 59 61.0
Psat3g189760 Pisum sativum HOM05D003399 ORTHO05D003393 1.6e-11 72.8 58 56.9
TWI75G1177 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 1.6e-11 72.8 60 58.3
Sabra03G0119900 Salix brachista HOM05D003399 ORTHO05D003393 2.1e-11 72.4 60 60.0
MELO3C017803.2 Cucumis melo HOM05D003399 ORTHO05D003393 2.8e-11 72.0 57 61.4
PSO017G5218 Papaver somniferum HOM05D003399 ORTHO05D003393 2.8e-11 72.0 60 61.7
PSO478G0797 Papaver somniferum HOM05D003399 ORTHO05D003393 2.8e-11 72.0 60 61.7
Lj1g0015103 Lotus japonicus HOM05D003399 ORTHO05D003393 3.6e-11 71.6 57 59.6
Aqoxy3G01823 Aquilegia oxysepala HOM05D003399 ORTHO05D003393 6.1e-11 70.9 60 58.3
Gohir.D02G174700 Gossypium hirsutum HOM05D003399 ORTHO05D003393 6.1e-11 70.9 58 60.3
Gorai.005G196300 Gossypium raimondii HOM05D003399 ORTHO05D003393 6.1e-11 70.9 58 60.3
Lalb_Chr10g0092161 Lupinus albus HOM05D003399 ORTHO05D003393 6.1e-11 70.9 77 54.5
Sed0004087 Sechium edule HOM05D003399 ORTHO05D003393 6.1e-11 70.9 57 57.9
MD13G1127900 Malus domestica HOM05D003399 ORTHO05D003393 8.0e-11 70.5 58 56.9
Nn3g16314 Nelumbo nucifera HOM05D003399 ORTHO05D003393 8.0e-11 70.5 60 56.7
Oeu003275.1 Olea europaea HOM05D003399 ORTHO05D003393 1.0e-10 70.1 58 56.9
MBI07_g40352_MAGBIO Magnolia biondii HOM05D003399 ORTHO05D003393 1.4e-10 69.7 60 55.0
MD16G1128300 Malus domestica HOM05D003399 ORTHO05D003393 1.4e-10 69.7 58 56.9
Oeu055475.1 Olea europaea HOM05D003399 ORTHO05D003393 1.4e-10 69.7 57 56.1
Duzib132G1194 Durio zibethinus HOM05D003399 ORTHO05D003393 1.8e-10 69.3 62 59.7
ClCG06G001790 Citrullus lanatus HOM05D003399 ORTHO05D003393 2.3e-10 68.9 55 58.2
FvH4_4g22950 Fragaria vesca HOM05D003399 ORTHO05D003393 2.3e-10 68.9 65 50.8
Glyma.08G258100 Glycine max HOM05D003399 ORTHO05D003393 2.3e-10 68.9 59 59.3
Gohir.A03G151600 Gossypium hirsutum HOM05D003399 ORTHO05D003393 2.3e-10 68.9 58 58.6
THA.LOC104825469 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 2.3e-10 68.9 58 53.4
Eucgr.B03547 Eucalyptus grandis HOM05D003399 ORTHO05D003393 3.0e-10 68.6 62 56.5
Prupe.1G218100 Prunus persica HOM05D003399 ORTHO05D003393 4.0e-10 68.2 61 57.4
Lalb_Chr04g0258081 Lupinus albus HOM05D003399 ORTHO05D003393 5.2e-10 67.8 58 60.3
SalBow2G2541 Salvia bowleyana HOM05D003399 ORTHO05D003393 5.2e-10 67.8 58 55.2
SalBow7G1980 Salvia bowleyana HOM05D003399 ORTHO05D003393 5.2e-10 67.8 58 55.2
Sopen01g005220 Solanum pennellii HOM05D003399 ORTHO05D003393 5.2e-10 67.8 59 54.2
Actinidia22126 Actinidia chinensis HOM05D003399 ORTHO05D003393 6.8e-10 67.4 63 57.1
CARHR027540 Cardamine hirsuta HOM05D003399 ORTHO05D003393 6.8e-10 67.4 42 76.2
EL10Ac6g13590 Beta vulgaris HOM05D003399 ORTHO05D003393 1.2e-09 66.6 58 55.2
CANSAT01G0203 Cannabis sativa HOM05D003399 ORTHO05D003393 1.2e-09 66.6 61 55.7
Actinidia34007 Actinidia chinensis HOM05D003399 ORTHO05D003393 1.5e-09 66.2 60 55.0
FAN12G0769 Fragaria x ananassa HOM05D003399 ORTHO05D003393 2.0e-09 65.9 69 49.3
FAN17G2315 Fragaria x ananassa HOM05D003399 ORTHO05D003393 2.0e-09 65.9 69 49.3
Sed0023362 Sechium edule HOM05D003399 ORTHO05D003393 3.4e-09 65.1 55 56.4
TAR629G1336 Trochodendron aralioides HOM05D003399 ORTHO05D003393 4.4e-09 64.7 60 55.0
MSTRG.465 Avicennia marina HOM05D003399 ORTHO05D003393 5.7e-09 64.3 60 55.0
Sc11g0000180 Simmondsia chinensis HOM05D003399 ORTHO05D003393 7.5e-09 63.9 57 56.1
PGR119G0713 Punica granatum HOM05D003399 ORTHO05D003393 9.8e-09 63.5 62 48.4
Oeu019432.1 Olea europaea HOM05D003399 ORTHO05D003393 1.3e-08 63.2 60 50.0
MELO3C022349.2 Cucumis melo HOM05D003399 ORTHO05D003393 2.2e-08 62.4 87 43.7
CsaV3_6G007830 Cucumis sativus L. HOM05D003399 ORTHO05D003393 2.2e-08 62.4 87 43.7
Migut.K01039 Erythranthe guttata HOM05D003399 ORTHO05D003393 2.2e-08 62.4 62 46.8
RcHm_v2.0_Chr4g0429231 Rosa chinensis HOM05D003399 ORTHO05D003393 2.2e-08 62.4 64 50.0
Eucgr.G01956 Eucalyptus grandis HOM05D003399 ORTHO05D003393 2.8e-08 62.0 59 49.2
HanXRQChr08g0210071 Helianthus annuus HOM05D003399 ORTHO05D003393 3.7e-08 61.6 61 49.2
HanXRQChr12g0362291 Helianthus annuus HOM05D003399 ORTHO05D003393 3.7e-08 61.6 62 53.2
unitig_22.g6383 Utricularia gibba HOM05D003399 ORTHO05D003393 4.9e-08 61.2 57 50.9
Lsat_1_v5_gn_4_1321 Lactuca sativa HOM05D003399 ORTHO05D003393 8.3e-08 60.5 60 48.3
Gohir.D12G144800 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.1e-07 60.1 60 46.7
Gorai.008G156200 Gossypium raimondii HOM05D003399 ORTHO05D003393 1.1e-07 60.1 60 46.7
Gohir.A12G140200 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.4e-07 59.7 60 46.7
Aqoxy5G03202 Aquilegia oxysepala HOM05D003399 ORTHO05D003393 1.8e-07 59.3 59 45.8
Oeu044505.1 Olea europaea HOM05D003399 ORTHO05D003393 1.8e-07 59.3 59 47.5
Gorai.012G125300 Gossypium raimondii HOM05D003399 ORTHO05D003393 5.4e-07 57.8 65 47.7
ECA233G3644 Erigeron canadensis HOM05D003399 ORTHO05D003393 7.0e-07 57.4 62 50.0
HPP92_020103 Vanilla planifolia HOM05D003399 ORTHO05D003393 9.2e-07 57.0 60 43.3
Gohir.A04G101200 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.6e-06 56.2 62 46.8
Gohir.D04G140300 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.6e-06 56.2 64 46.9
Os04g0396500 Oryza sativa ssp. japonica HOM05D003399 ORTHO05D003393 2.0e-06 55.8 60 45.0
HPP92_023020 Vanilla planifolia HOM05D003399 ORTHO05D003393 2.7e-06 55.5 60 43.3
HPP92_023093 Vanilla planifolia HOM05D003399 ORTHO05D003393 3.5e-06 55.1 60 43.3
Zm00001eb084940 Zea mays HOM05D003399 ORTHO05D003393 3.5e-06 55.1 60 45.0
PSO478G0221 Papaver somniferum HOM05D003399 ORTHO05D003393 4.5e-06 54.7 68 45.6
Sc04g0010500 Simmondsia chinensis HOM05D003399 ORTHO05D003393 7.8e-06 53.9 55 43.6


User provided reference genes

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