Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p25340 Brassica napus HOM05D003540 ORTHO05D004012 4.3e-56 221.1 112 100.0
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 1.5e-40 169.5 89 96.6
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 1.5e-40 169.5 89 96.6
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 3.3e-40 168.3 89 95.5
Aa31LG6G11550 Aethionema arabicum HOM05D003540 ORTHO05D004012 5.7e-40 167.5 88 93.2
BcaNung06754 Brassica carinata HOM05D003540 ORTHO05D004012 2.8e-39 165.2 89 93.3
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 3.7e-39 164.9 89 93.3
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 1.4e-38 162.9 89 93.3
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 1.8e-38 162.5 89 92.1
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 1.8e-38 162.5 89 93.3
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 9.1e-38 160.2 89 91.0
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 2.0e-37 159.1 85 95.3
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 2.6e-37 158.7 89 91.0
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 3.4e-37 158.3 90 91.1
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 3.4e-37 158.3 89 89.9
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 4.5e-37 157.9 89 89.9
BcaB07g32485 Brassica carinata HOM05D003540 ORTHO05D004012 1.0e-36 156.8 89 88.8
BcaC05g26921 Brassica carinata HOM05D003540 ORTHO05D004012 2.2e-36 155.6 89 87.6
C05p27740 Brassica napus HOM05D003540 ORTHO05D004012 2.2e-36 155.6 89 87.6
CARHR028280 Cardamine hirsuta HOM05D003540 ORTHO05D004012 2.2e-36 155.6 89 89.9
BolC5t31494H Brassica oleracea HOM05D003540 ORTHO05D004012 3.8e-36 154.8 84 90.5
AL1G42780 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 6.5e-36 154.1 89 87.6
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 4.4e-32 141.4 89 83.1
THA.LOC104812634 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.3e-31 139.8 84 82.1
AT1G29060 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 2.2e-31 139.0 89 84.3
A07p10970 Brassica napus HOM05D003540 ORTHO05D004012 4.8e-31 137.9 89 82.0
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.1e-30 136.7 89 78.7
Ciclev10002815m.g Citrus clementina HOM05D003540 ORTHO05D004012 1.0e-28 130.2 89 71.9
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 6.5e-28 127.5 84 76.2
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 6.5e-28 127.5 84 76.2
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 6.5e-28 127.5 84 76.2
Cpa.g.sc36.201 Carica papaya HOM05D003540 ORTHO05D004012 8.5e-28 127.1 84 75.0
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.1e-27 126.7 84 76.2
Thecc.08G066000 Theobroma cacao HOM05D003540 ORTHO05D004012 1.1e-27 126.7 84 75.0
Atru.chr13.1061 Acer truncatum HOM05D003540 ORTHO05D004012 2.5e-27 125.6 85 72.9
Duzib093G0958 Durio zibethinus HOM05D003540 ORTHO05D004012 7.2e-27 124.0 84 75.0
Manes.18G062100 Manihot esculenta HOM05D003540 ORTHO05D004012 2.7e-26 122.1 84 72.6
Dinv42647 Davidia involucrata HOM05D003540 ORTHO05D004012 4.7e-26 121.3 85 72.9
Duzib041G0585 Durio zibethinus HOM05D003540 ORTHO05D004012 1.8e-25 119.4 96 64.6
Potri.005G159600 Populus trichocarpa HOM05D003540 ORTHO05D004012 2.3e-25 119.0 81 71.6
TWI12G0801 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 3.9e-25 118.2 84 70.2
Duzib116G0544 Durio zibethinus HOM05D003540 ORTHO05D004012 5.2e-25 117.9 84 71.4
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 1.1e-24 116.7 84 71.4
Sed0022834 Sechium edule HOM05D003540 ORTHO05D004012 1.1e-24 116.7 89 68.5
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 2.6e-24 115.5 89 68.5
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 4.4e-24 114.8 89 67.4
CiPaw.07G169400 Carya illinoinensis HOM05D003540 ORTHO05D004012 5.7e-24 114.4 84 66.7
Phvul.008G178700 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 5.7e-24 114.4 84 70.2
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 7.4e-24 114.0 84 70.2
Ca_05384_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 9.7e-24 113.6 85 68.2
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 9.7e-24 113.6 89 66.3
Nitab4.5_0013778g0010 Nicotiana tabacum HOM05D003540 ORTHO05D004012 9.7e-24 113.6 85 68.2
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 1.7e-23 112.8 90 66.7
Nitab4.5_0000008g0680 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.7e-23 112.8 84 69.0
arahy.Tifrunner.gnm1.ann1.Q67T8J Arachis hypogaea HOM05D003540 ORTHO05D004012 2.2e-23 112.5 84 67.9
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 2.2e-23 112.5 89 66.3
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 2.8e-23 112.1 89 65.2
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 2.8e-23 112.1 89 66.3
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 2.8e-23 112.1 89 66.3
Sabra05G0121300 Salix brachista HOM05D003540 ORTHO05D004012 2.8e-23 112.1 81 66.7
QL09p016915 Quercus lobata HOM05D003540 ORTHO05D004012 3.7e-23 111.7 84 65.5
CSS0047709 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 4.8e-23 111.3 89 67.4
Glyma.14G179100 Glycine max HOM05D003540 ORTHO05D004012 4.8e-23 111.3 84 70.2
arahy.Tifrunner.gnm1.ann1.QI1MS0 Arachis hypogaea HOM05D003540 ORTHO05D004012 6.3e-23 110.9 84 66.7
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 6.3e-23 110.9 89 65.2
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 8.2e-23 110.5 89 65.2
Sed0006262 Sechium edule HOM05D003540 ORTHO05D004012 8.2e-23 110.5 90 67.8
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 8.2e-23 110.5 89 65.2
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 8.2e-23 110.5 89 65.2
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 1.1e-22 110.2 89 65.2
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 1.1e-22 110.2 89 65.2
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 1.1e-22 110.2 89 65.2
Glyma.04G097000 Glycine max HOM05D003540 ORTHO05D004012 1.4e-22 109.8 84 67.9
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 1.4e-22 109.8 84 66.7
VMungo0647G0300 Vigna mungo HOM05D003540 ORTHO05D004012 2.4e-22 109.0 84 69.0
Glyma.02G211500 Glycine max HOM05D003540 ORTHO05D004012 3.1e-22 108.6 84 67.9
MELO3C003542.2 Cucumis melo HOM05D003540 ORTHO05D004012 4.1e-22 108.2 90 64.4
Medtr5g065550 Medicago truncatula HOM05D003540 ORTHO05D004012 4.1e-22 108.2 84 65.5
Sopen04g029890 Solanum pennellii HOM05D003540 ORTHO05D004012 4.1e-22 108.2 89 64.0
Psat2g066800 Pisum sativum HOM05D003540 ORTHO05D004012 5.3e-22 107.8 84 66.7
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 5.3e-22 107.8 75 69.3
Solyc04g074940.4 Solanum lycopersicum HOM05D003540 ORTHO05D004012 7.0e-22 107.5 89 64.0
TAR381G0359 Trochodendron aralioides HOM05D003540 ORTHO05D004012 7.0e-22 107.5 87 64.4
Atru.chr3.3368 Acer truncatum HOM05D003185 ORTHO05D007711 9.1e-22 107.1 80 65.0
CsaV3_3G047800 Cucumis sativus L. HOM05D003540 ORTHO05D004012 1.2e-21 106.7 86 65.1
vmacro04682 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 1.6e-21 106.3 78 71.8
AUR62027843 Chenopodium quinoa HOM05D003540 ORTHO05D004012 2.0e-21 105.9 70 74.3
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 2.0e-21 105.9 82 62.2
Ca_16024_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 2.6e-21 105.5 86 66.3
Nitab4.5_0001984g0080 Nicotiana tabacum HOM05D003540 ORTHO05D004012 2.6e-21 105.5 89 62.9
TPR.G6376 Trifolium pratense HOM05D003540 ORTHO05D004012 2.6e-21 105.5 85 67.1
TAR625G0842 Trochodendron aralioides HOM05D003540 ORTHO05D004012 2.6e-21 105.5 108 52.8
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 3.5e-21 105.1 89 61.8
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 4.5e-21 104.8 73 69.9
AUR62019000 Chenopodium quinoa HOM05D003540 ORTHO05D004012 4.5e-21 104.8 69 73.9
Potri.002G102400 Populus trichocarpa HOM05D003540 ORTHO05D004012 4.5e-21 104.8 77 66.2
EL10Ac3g06094 Beta vulgaris HOM05D003540 ORTHO05D004012 5.9e-21 104.4 74 70.3
Glyma.06G098800 Glycine max HOM05D003540 ORTHO05D004012 5.9e-21 104.4 84 64.3
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 5.9e-21 104.4 75 65.3
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 7.7e-21 104.0 99 58.6
Nn1g08254 Nelumbo nucifera HOM05D003540 ORTHO05D004012 1.0e-20 103.6 82 64.6
arahy.Tifrunner.gnm1.ann1.41SNZJ Arachis hypogaea HOM05D003540 ORTHO05D004012 1.7e-20 102.8 99 55.6
arahy.Tifrunner.gnm1.ann1.NU78SD Arachis hypogaea HOM05D003540 ORTHO05D004012 1.7e-20 102.8 99 55.6
Medtr3g099773 Medicago truncatula HOM05D003540 ORTHO05D004012 2.2e-20 102.4 75 69.3
Peaxi162Scf00725g00536 Petunia axillaris HOM05D003540 ORTHO05D004012 2.2e-20 102.4 89 60.7
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 3.8e-20 101.7 74 64.9
ClCG11G014400 Citrullus lanatus HOM05D003540 ORTHO05D004012 6.5e-20 100.9 102 57.8
Lj1g0025059 Lotus japonicus HOM05D003540 ORTHO05D004012 8.5e-20 100.5 82 63.4
Lalb_Chr23g0270301 Lupinus albus HOM05D003540 ORTHO05D004012 8.5e-20 100.5 86 61.6
Manes.02G147700 Manihot esculenta HOM05D003540 ORTHO05D004012 8.5e-20 100.5 75 68.0
Phvul.009G034800 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 1.9e-19 99.4 84 61.9
Lalb_Chr10g0102641 Lupinus albus HOM05D003540 ORTHO05D004012 2.5e-19 99.0 84 63.1
Rhsim07G0209200 Rhododendron simsii HOM05D003540 ORTHO05D004012 2.5e-19 99.0 89 62.9
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 5.5e-19 97.8 89 58.4
MBI02_g18294_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 5.5e-19 97.8 78 62.8
Psat5g050000 Pisum sativum HOM05D003540 ORTHO05D004012 5.5e-19 97.8 85 61.2
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 9.4e-19 97.1 68 69.1
AUR62002400 Chenopodium quinoa HOM05D003540 ORTHO05D004012 1.2e-18 96.7 85 57.6
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 1.6e-18 96.3 75 64.0
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 2.1e-18 95.9 82 57.3
Ah.05g170560 Amaranthus hybridus HOM05D003540 ORTHO05D004012 3.6e-18 95.1 74 59.5
HPP92_023309 Vanilla planifolia HOM05D003540 ORTHO05D004012 3.6e-18 95.1 78 57.7
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 4.7e-18 94.7 73 64.4
Hma1.2p1_0961F.1_g241695 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 8.0e-18 94.0 89 56.2
Hma1.2p1_0961F.1_g241710 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 8.0e-18 94.0 89 56.2
Oeu013165.1 Olea europaea HOM05D003540 ORTHO05D004012 8.0e-18 94.0 76 63.2
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 1.0e-17 93.6 67 62.7
CSS0040517 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.4e-17 93.2 89 59.6
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 1.4e-17 93.2 70 67.1
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 1.8e-17 92.8 78 65.4
QL06p047634 Quercus lobata HOM05D003540 ORTHO05D004012 1.8e-17 92.8 68 63.2
CDE05G3211 Ceratophyllum demersum HOM05D000364 ORTHO05D004012 2.3e-17 92.4 71 62.0
SalBow6G2258 Salvia bowleyana HOM05D003540 ORTHO05D004012 3.0e-17 92.0 75 64.0
SalBow6G4055 Salvia bowleyana HOM05D003540 ORTHO05D004012 3.0e-17 92.0 75 64.0
CiPaw.01G047900 Carya illinoinensis HOM05D003540 ORTHO05D004012 6.7e-17 90.9 67 62.7
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 6.7e-17 90.9 68 63.2
CDE05G3432 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 8.8e-17 90.5 71 60.6
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 1.5e-16 89.7 67 62.7
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 2.0e-16 89.4 65 64.6
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 2.6e-16 89.0 66 65.2
Haze_22354 Corylus avellana HOM05D003540 ORTHO05D004012 4.4e-16 88.2 65 66.2
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 5.7e-16 87.8 67 61.2
ATR0736G080 Amborella trichopoda HOM05D003540 ORTHO05D004012 9.7e-16 87.0 82 59.8
Cfa013710 Carpinus fangiana HOM05D003540 ORTHO05D004012 9.7e-16 87.0 65 64.6
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 2.2e-15 85.9 67 59.7
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 2.2e-15 85.9 67 59.7
Gohir.D11G218000 Gossypium hirsutum HOM05D003540 ORTHO05D004012 3.7e-15 85.1 67 59.7
Zm00001eb325480 Zea mays HOM05D003540 ORTHO05D004012 4.8e-15 84.7 67 62.7
MD08G1191600 Malus domestica HOM05D003540 ORTHO05D004012 8.2e-15 84.0 70 60.0
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 1.4e-14 83.2 57 71.9
MSTRG.11484 Avicennia marina HOM05D003540 ORTHO05D004012 1.8e-14 82.8 75 58.7
Os07g0577900 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 1.8e-14 82.8 72 56.9
Lsat_1_v5_gn_6_105381 Lactuca sativa HOM05D003540 ORTHO05D004012 3.1e-14 82.0 66 60.6
Lalb_Chr23g0270201 Lupinus albus HOM05D003540 ORTHO05D004012 4.1e-14 81.6 63 65.1
Nitab4.5_0007681g0020 Nicotiana tabacum HOM05D003540 ORTHO05D004012 4.1e-14 81.6 65 66.2
SEGI_15699 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 1.2e-13 80.1 79 51.9
Zm00001eb107620 Zea mays HOM05D003540 ORTHO05D004012 3.5e-13 78.6 67 59.7
SGA_v2.0_scaffold37G14731 Striga asiatica HOM05D003540 ORTHO05D004012 5.9e-13 77.8 75 54.7
SalBow6G0357 Salvia bowleyana HOM05D003540 ORTHO05D004012 1.3e-12 76.6 75 57.3
SalBow7G2649 Salvia bowleyana HOM05D003540 ORTHO05D004012 1.3e-12 76.6 75 53.3
CSS0021893 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 2.9e-12 75.5 64 59.4
Os03g0187700 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 2.9e-12 75.5 66 56.1
Migut.O00140 Erythranthe guttata HOM05D003540 ORTHO05D004012 5.0e-12 74.7 72 55.6
SEGI_39968 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 5.0e-12 74.7 69 55.1
SGA_v2.0_scaffold5G02749 Striga asiatica HOM05D003540 ORTHO05D004012 5.0e-12 74.7 75 53.3
Hund16878 Selenicereus undatus HOM05D003540 ORTHO05D004012 6.5e-12 74.3 103 43.7
FAN13G2229 Fragaria x ananassa HOM05D003540 ORTHO05D004012 7.2e-11 70.9 61 55.7
AagrBONN_evm.TU.Sc2ySwM_228.2385 Anthoceros agrestis HOM05D003540 ORTHO05D004012 9.4e-11 70.5 63 50.8
vmacro21941 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 9.4e-11 70.5 90 48.9
TWI56G0839 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 4.7e-10 68.2 40 75.0
FvH4_5g35960 Fragaria vesca HOM05D003540 ORTHO05D004012 6.1e-10 67.8 61 54.1
FAN08G1899 Fragaria x ananassa HOM05D003540 ORTHO05D004012 6.1e-10 67.8 61 54.1
FAN18G2789 Fragaria x ananassa HOM05D003540 ORTHO05D004012 6.1e-10 67.8 61 54.1
RcHm_v2.0_Chr7g0237701 Rosa chinensis HOM05D003540 ORTHO05D004012 6.1e-10 67.8 61 54.1
PSO675G6040 Papaver somniferum HOM05D003540 ORTHO05D004012 8.0e-10 67.4 77 46.8
Oeu023447.1 Olea europaea HOM05D003540 ORTHO05D004012 1.0e-09 67.0 52 65.4
Nitab4.5_0001078g0070 Nicotiana tabacum HOM05D003540 ORTHO05D004012 6.8e-09 64.3 59 61.0
Haze_15046 Corylus avellana HOM05D003540 ORTHO05D004012 2.6e-08 62.4 42 66.7
SMO141G0171 Selaginella moellendorffii HOM05D003540 ORTHO05D004012 4.4e-08 61.6 49 55.1
Cc04_g11820 Coffea canephora HOM05D003540 ORTHO05D004012 5.7e-08 61.2 86 46.5
Sabra17G0067100 Salix brachista HOM05D003540 ORTHO05D004012 9.8e-08 60.5 85 41.2
AagrBONN_evm.TU.Sc2ySwM_228.2961 Anthoceros agrestis HOM05D003540 ORTHO05D004012 4.8e-07 58.2 60 50.0
Pp3c6_21020 Physcomitrium patens HOM05D003540 ORTHO05D004012 3.1e-06 55.5 65 44.6
Mapoly0006s0109 Marchantia polymorpha HOM05D003540 ORTHO05D004012 9.1e-06 53.9 62 43.5


User provided reference genes

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