Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 1.8e-238 828.9 438 100.0
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 9.7e-229 796.6 441 93.0
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 1.1e-227 793.1 468 87.6
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 2.4e-227 792.0 441 93.7
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 1.5e-224 782.7 441 92.7
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 6.6e-217 757.3 442 91.9
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 8.3e-212 740.3 443 84.7
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 1.1e-211 740.0 443 87.1
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 8.0e-207 723.8 440 86.1
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 9.2e-203 710.3 444 85.8
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 1.3e-201 706.4 440 84.5
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 1.7e-201 706.1 421 88.1
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 3.9e-201 704.9 421 87.9
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 4.3e-200 701.4 470 75.3
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 4.7e-199 698.0 421 87.6
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 4.6e-194 681.4 415 80.5
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 7.8e-194 680.6 470 73.8
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 1.7e-193 679.5 471 74.1
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 2.2e-172 609.4 440 69.3
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 9.6e-160 567.4 372 71.5
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 3.8e-156 555.4 357 72.0
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 4.8e-143 511.9 381 64.6
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 3.4e-141 505.8 377 64.7
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 1.3e-140 503.8 377 64.5
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 2.7e-138 496.1 374 62.0
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 2.5e-136 489.6 372 62.6
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 3.3e-136 489.2 382 62.0
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 3.3e-136 489.2 376 62.8
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 5.7e-136 488.4 384 61.5
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 7.4e-136 488.0 363 62.5
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 9.7e-136 487.6 383 60.8
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.8e-135 486.1 382 60.2
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 4.8e-135 485.3 382 60.7
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 6.3e-135 485.0 384 61.2
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 8.2e-135 484.6 382 60.2
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.1e-134 484.2 416 57.9
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 1.1e-134 484.2 360 63.1
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.4e-134 483.8 384 61.5
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 3.1e-134 482.6 368 61.4
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 3.1e-134 482.6 383 59.8
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 4.1e-134 482.3 382 60.2
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.0e-133 479.9 382 59.9
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 2.6e-133 479.6 363 62.8
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 2.6e-133 479.6 382 60.7
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 4.5e-133 478.8 413 60.3
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 4.5e-133 478.8 362 61.9
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 7.7e-133 478.0 360 62.2
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 7.7e-133 478.0 356 62.6
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 7.7e-133 478.0 384 61.5
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 7.7e-133 478.0 433 54.7
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 2.9e-132 476.1 377 59.4
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 2.9e-132 476.1 382 61.0
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 2.9e-132 476.1 381 60.9
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 3.8e-132 475.7 362 61.0
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 5.0e-132 475.3 381 59.1
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 8.5e-132 474.6 371 62.0
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 1.4e-131 473.8 362 61.3
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 1.9e-131 473.4 358 62.8
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 1.9e-131 473.4 365 60.8
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 3.2e-131 472.6 362 61.3
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 4.2e-131 472.2 340 64.7
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 9.4e-131 471.1 359 63.8
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.6e-130 470.3 375 61.1
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 1.6e-130 470.3 360 61.7
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 2.7e-130 469.5 360 61.7
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 4.7e-130 468.8 382 59.7
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.0e-129 467.6 375 59.2
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 1.4e-129 467.2 383 59.0
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 1.8e-129 466.8 370 62.4
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 2.3e-129 466.5 372 59.9
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 2.3e-129 466.5 358 61.2
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 3.0e-129 466.1 359 62.1
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 8.8e-129 464.5 378 58.5
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.0e-128 463.4 371 60.4
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.6e-128 463.0 393 57.3
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 5.7e-128 461.8 380 58.9
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 5.7e-128 461.8 374 59.6
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 9.7e-128 461.1 361 60.9
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 4.8e-127 458.8 358 62.3
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.4e-126 457.2 369 59.9
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 3.1e-126 456.1 345 62.3
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 3.1e-126 456.1 397 56.9
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 3.1e-126 456.1 397 56.9
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 3.1e-126 456.1 358 58.9
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 4.1e-126 455.7 384 58.1
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 5.3e-126 455.3 360 62.2
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 7.0e-126 454.9 360 61.9
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 9.1e-126 454.5 340 63.2
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 9.1e-126 454.5 376 57.7
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 1.2e-125 454.1 365 60.0
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 1.5e-125 453.8 381 57.5
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.0e-125 453.4 389 56.6
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 2.0e-125 453.4 339 61.4
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 3.5e-125 452.6 355 61.7
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 5.9e-125 451.8 359 61.6
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 1.0e-124 451.1 387 57.9
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 1.3e-124 450.7 387 57.9
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 5.0e-124 448.7 360 60.6
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 2.5e-123 446.4 382 57.6
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 9.4e-123 444.5 380 58.4
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 3.6e-122 442.6 359 59.3
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 4.7e-122 442.2 386 57.5
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 1.0e-121 441.0 383 56.1
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 6.7e-121 438.3 360 58.9
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 4.4e-120 435.6 382 56.8
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 1.3e-119 434.1 321 62.6
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 6.3e-119 431.8 419 51.1
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 7.0e-118 428.3 357 60.2
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 3.0e-113 412.9 382 55.0
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 6.8e-113 411.8 369 56.1
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.4e-110 403.3 381 52.5
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.2e-109 401.0 417 49.6
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 4.5e-109 399.1 370 52.7
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 8.5e-108 394.8 297 63.3
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 7.2e-107 391.7 386 50.3
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 8.0e-106 388.3 380 52.1
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.7e-104 382.1 344 54.4
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 9.8e-104 381.3 379 47.5
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 9.1e-102 374.8 291 62.2
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 3.5e-101 372.9 291 60.1
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 6.6e-100 368.6 383 50.4
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 8.0e-98 361.7 273 62.3
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.8e-97 360.5 375 49.3
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 1.5e-96 357.5 294 59.9
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 3.3e-91 339.7 322 50.9
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 4.7e-90 335.9 293 54.6
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 4.3e-83 312.8 375 45.9
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 4.3e-83 312.8 389 44.2
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 9.5e-83 311.6 357 45.7
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 1.5e-80 304.3 378 45.0
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 9.2e-78 295.0 291 51.9
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 5.1e-76 289.3 295 49.8
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 3.4e-64 250.0 348 42.8
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 4.4e-64 249.6 199 59.3
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 3.2e-62 243.4 236 52.5
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.9e-57 225.7 226 49.6
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 2.4e-49 200.7 304 41.4
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 9.0e-49 198.7 320 37.5
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 8.4e-47 192.2 355 35.8
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 2.1e-45 187.6 166 56.0
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 3.5e-45 186.8 136 66.9
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.7e-44 182.6 230 43.5
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 2.1e-42 177.6 358 34.9
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 2.1e-42 177.6 358 34.9
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.5e-38 164.1 158 51.3
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 4.6e-37 159.8 370 32.4
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 3.2e-30 137.1 393 27.5
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 1.3e-26 125.2 378 26.5
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 5.0e-23 113.2 86 68.6
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 5.0e-23 113.2 86 68.6
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 2.1e-21 107.8 311 26.7
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.4e-20 105.1 131 42.7
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 9.1e-17 92.4 104 49.0
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.1e-13 81.3 53 69.8
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 6.7e-12 76.3 71 54.9
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 4.8e-10 70.1 75 46.7
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 6.5e-07 59.7 41 68.3
ECA248G2349 Erigeron canadensis HOM05D000041 ORTHO05D000452 4.2e-06 57.0 50 56.0


User provided reference genes

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