Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p24240 Brassica napus HOM05D006193 ORTHO05D007808 5.3e-69 264.2 133 100.0
BraA08t34379Z Brassica rapa HOM05D006193 ORTHO05D007808 9.4e-58 226.9 121 95.9
BcaB04g18121 Brassica carinata HOM05D006193 ORTHO05D007808 2.8e-54 215.3 122 90.2
BcaC07g37722 Brassica carinata HOM05D006193 ORTHO05D007808 1.9e-50 202.6 123 87.0
BolC8t48104H Brassica oleracea HOM05D006193 ORTHO05D007808 1.9e-50 202.6 123 87.0
BraA08t33036Z Brassica rapa HOM05D006193 ORTHO05D007808 1.9e-50 202.6 123 87.0
Sp7g11980 Schrenkiella parvula HOM05D006193 ORTHO05D007808 7.2e-50 200.7 128 82.8
A08p10360 Brassica napus HOM05D006193 ORTHO05D007808 9.4e-50 200.3 123 86.2
AT4G14145 Arabidopsis thaliana HOM05D006193 ORTHO05D007808 1.6e-49 199.5 129 82.2
AL7G42250 Arabidopsis lyrata HOM05D006193 ORTHO05D007808 4.7e-49 198.0 129 81.4
CARHR220160 Cardamine hirsuta HOM05D006193 ORTHO05D007808 2.3e-48 195.7 128 80.5
Carub.0007s2828 Capsella rubella HOM05D006193 ORTHO05D007808 9.7e-47 190.3 127 77.2
BcaC01g00219 Brassica carinata HOM05D006193 ORTHO05D007808 1.4e-45 186.4 122 79.5
Thhalv10026557m.g Eutrema salsugineum HOM05D006193 ORTHO05D007808 3.1e-45 185.3 128 78.9
Aa31LG9G3240 Aethionema arabicum HOM05D006193 ORTHO05D007808 9.1e-45 183.7 129 74.4
Manes.10G047101 Manihot esculenta HOM05D006193 ORTHO05D007808 2.2e-43 179.1 125 72.0
Atru.chr12.797 Acer truncatum HOM05D006193 ORTHO05D007808 8.5e-43 177.2 121 72.7
THA.LOC104808680 Tarenaya hassleriana HOM05D006193 ORTHO05D007808 1.1e-42 176.8 123 73.2
Gohir.D06G175300 Gossypium hirsutum HOM05D006193 ORTHO05D007808 1.4e-42 176.4 114 73.7
Gorai.010G205700 Gossypium raimondii HOM05D006193 ORTHO05D007808 1.4e-42 176.4 114 73.7
Gohir.A06G167900 Gossypium hirsutum HOM05D006193 ORTHO05D007808 9.4e-42 173.7 114 72.8
Cfa001656 Carpinus fangiana HOM05D006193 ORTHO05D007808 2.1e-41 172.6 122 66.4
Thecc.10G076000 Theobroma cacao HOM05D006193 ORTHO05D007808 4.7e-41 171.4 114 71.9
SalBow4G2149 Salvia bowleyana HOM05D006193 ORTHO05D007808 6.1e-41 171.0 121 69.4
Cfa001990 Carpinus fangiana HOM05D006193 ORTHO05D007808 1.4e-40 169.9 126 65.9
COL.COLO4_28414 Corchorus olitorius HOM05D006193 ORTHO05D007808 1.4e-40 169.9 126 66.7
Duzib114G0385 Durio zibethinus HOM05D006193 ORTHO05D007808 1.4e-40 169.9 107 72.9
Actinidia38857 Actinidia chinensis HOM05D006193 ORTHO05D007808 2.3e-40 169.1 124 70.2
Migut.F01979 Erythranthe guttata HOM05D006193 ORTHO05D007808 2.3e-40 169.1 122 71.3
Sed0026653 Sechium edule HOM05D006193 ORTHO05D007808 3.0e-40 168.7 117 68.4
Haze_16878 Corylus avellana HOM05D006193 ORTHO05D007808 3.9e-40 168.3 126 65.9
Ciclev10033053m.g Citrus clementina HOM05D006193 ORTHO05D007808 5.2e-40 167.9 127 66.9
Migut.D01650 Erythranthe guttata HOM05D006193 ORTHO05D007808 8.8e-40 167.2 122 70.5
Lsat_1_v5_gn_1_77620 Lactuca sativa HOM05D006193 ORTHO05D007808 2.0e-39 166.0 128 68.0
Lj5g0007819 Lotus japonicus HOM05D006193 ORTHO05D007808 2.0e-39 166.0 108 75.9
HanXRQChr08g0229761 Helianthus annuus HOM05D006193 ORTHO05D007808 3.3e-39 165.2 118 67.8
CiPaw.02G173400 Carya illinoinensis HOM05D006193 ORTHO05D007808 4.4e-39 164.9 100 76.0
HanXRQChr01g0023971 Helianthus annuus HOM05D006193 ORTHO05D007808 4.4e-39 164.9 104 74.0
Lalb_Chr01g0009491 Lupinus albus HOM05D006193 ORTHO05D007808 4.4e-39 164.9 127 68.5
Phvul.007G095900 Phaseolus vulgaris HOM05D006193 ORTHO05D007808 4.4e-39 164.9 102 77.5
Glyma.10G210100 Glycine max HOM05D006193 ORTHO05D007808 7.4e-39 164.1 108 72.2
Prupe.2G212200 Prunus persica HOM05D006193 ORTHO05D007808 7.4e-39 164.1 98 75.5
Sed0026413 Sechium edule HOM05D006193 ORTHO05D007808 7.4e-39 164.1 122 64.8
FvH4_7g19210 Fragaria vesca HOM05D006193 ORTHO05D007808 9.7e-39 163.7 103 72.8
TWI63G1140 Tripterygium wilfordii HOM05D006193 ORTHO05D007808 9.7e-39 163.7 122 65.6
MD01G1107500 Malus domestica HOM05D006193 ORTHO05D007808 1.3e-38 163.3 99 75.8
Glyma.20G180500 Glycine max HOM05D006193 ORTHO05D007808 1.7e-38 162.9 122 66.4
VMungo0720G0734 Vigna mungo HOM05D006193 ORTHO05D007808 1.7e-38 162.9 102 75.5
RcHm_v2.0_Chr1g0363061 Rosa chinensis HOM05D006193 ORTHO05D007808 2.2e-38 162.5 104 73.1
arahy.Tifrunner.gnm1.ann1.4G5N71 Arachis hypogaea HOM05D006193 ORTHO05D007808 4.8e-38 161.4 107 73.8
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 4.8e-38 161.4 103 71.8
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 4.8e-38 161.4 103 71.8
ECA248G2014 Erigeron canadensis HOM05D006193 ORTHO05D007808 6.3e-38 161.0 129 62.8
Solyc03g007490.3 Solanum lycopersicum HOM05D006193 ORTHO05D007808 6.3e-38 161.0 121 66.9
TAR623G1160 Trochodendron aralioides HOM05D006193 ORTHO05D007808 8.2e-38 160.6 115 66.1
Sopen03g003450 Solanum pennellii HOM05D006193 ORTHO05D007808 1.4e-37 159.8 127 65.4
TPR.G1973 Trifolium pratense HOM05D006193 ORTHO05D007808 1.4e-37 159.8 122 68.0
CANSAT54G0886 Cannabis sativa HOM05D006193 ORTHO05D007808 1.8e-37 159.5 123 66.7
CSS0007064 Camellia sinensis var. sinensis HOM05D006193 ORTHO05D007808 3.1e-37 158.7 131 65.6
PGR044G2737 Punica granatum HOM05D006193 ORTHO05D007808 3.1e-37 158.7 101 72.3
TAR369G0988 Trochodendron aralioides HOM05D006193 ORTHO05D007808 3.1e-37 158.7 115 65.2
Nn2g10831 Nelumbo nucifera HOM05D006193 ORTHO05D007808 5.3e-37 157.9 115 65.2
MSTRG.27474 Avicennia marina HOM05D006193 ORTHO05D007808 7.0e-37 157.5 107 72.0
Duzib128G0799 Durio zibethinus HOM05D006193 ORTHO05D007808 7.0e-37 157.5 128 61.7
Nitab4.5_0006507g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 7.0e-37 157.5 131 63.4
Nitab4.5_0000071g0090 Nicotiana tabacum HOM05D006193 ORTHO05D007808 9.1e-37 157.1 127 65.4
arahy.Tifrunner.gnm1.ann1.889ECD Arachis hypogaea HOM05D006193 ORTHO05D007808 1.2e-36 156.8 124 66.1
Eucgr.J01081 Eucalyptus grandis HOM05D006193 ORTHO05D007808 1.2e-36 156.8 122 62.3
Peaxi162Scf00370g00117 Petunia axillaris HOM05D006193 ORTHO05D007808 1.6e-36 156.4 121 66.1
PGSC0003DMG400009070 Solanum tuberosum HOM05D006193 ORTHO05D007808 1.6e-36 156.4 118 66.1
CAN.G108.21 Capsicum annuum HOM05D006193 ORTHO05D007808 2.0e-36 156.0 124 65.3
Cc02_g11260 Coffea canephora HOM05D006193 ORTHO05D007808 2.0e-36 156.0 122 66.4
DCAR_016552 Daucus carota HOM05D006193 ORTHO05D007808 2.6e-36 155.6 104 71.2
PSO210G4078 Papaver somniferum HOM05D006193 ORTHO05D007808 2.6e-36 155.6 120 64.2
PSO832G3015 Papaver somniferum HOM05D006193 ORTHO05D007808 2.6e-36 155.6 120 64.2
QL08p055470 Quercus lobata HOM05D006193 ORTHO05D007808 3.5e-36 155.2 126 63.5
Peaxi162Scf00011g01839 Petunia axillaris HOM05D006193 ORTHO05D007808 4.5e-36 154.8 121 64.5
SGA_v2.0_scaffold355G49780 Striga asiatica HOM05D006193 ORTHO05D007808 5.9e-36 154.5 107 69.2
SGA_v2.0_scaffold250G44987 Striga asiatica HOM05D006193 ORTHO05D007808 7.7e-36 154.1 111 66.7
CDE03G0070 Ceratophyllum demersum HOM05D006193 ORTHO05D007808 1.0e-35 153.7 107 65.4
Oeu042739.1 Olea europaea HOM05D006193 ORTHO05D007808 2.9e-35 152.1 138 59.4
ATR0329G030 Amborella trichopoda HOM05D006193 ORTHO05D007808 3.8e-35 151.8 114 63.2
Potri.010G223700 Populus trichocarpa HOM05D006193 ORTHO05D007808 3.8e-35 151.8 124 61.3
FAN03G1544 Fragaria x ananassa HOM05D006193 ORTHO05D007808 8.5e-35 150.6 96 70.8
CiPaw.16G031600 Carya illinoinensis HOM05D006193 ORTHO05D007808 1.5e-34 149.8 114 64.0
Os03g0288400 Oryza sativa ssp. japonica HOM05D006193 ORTHO05D007808 4.2e-34 148.3 119 60.5
unitig_37.g12308 Utricularia gibba HOM05D006193 ORTHO05D007808 5.5e-34 147.9 107 67.3
MBI07_g44648_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 7.2e-34 147.5 114 61.4
SGA_v2.0_scaffold24G10658 Striga asiatica HOM05D006193 ORTHO05D007808 7.2e-34 147.5 106 67.9
Aqoxy1G03645 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 9.4e-34 147.1 114 60.5
HPP92_011207 Vanilla planifolia HOM05D006193 ORTHO05D007808 1.6e-33 146.4 121 58.7
Oeu014384.2 Olea europaea HOM05D006193 ORTHO05D007808 4.7e-33 144.8 150 54.0
Aqoxy1G03181 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 6.1e-33 144.4 109 62.4
Hund05693 Selenicereus undatus HOM05D006193 ORTHO05D007808 6.1e-33 144.4 113 63.7
Zm00001eb062340 Zea mays HOM05D006193 ORTHO05D007808 8.0e-33 144.1 126 56.3
ClCG05G021080 Citrullus lanatus HOM05D006193 ORTHO05D007808 1.0e-32 143.7 151 51.7
GSVIVG01016260001 Vitis vinifera HOM05D006193 ORTHO05D007808 1.0e-32 143.7 104 63.5
MELO3C012421.2 Cucumis melo HOM05D006193 ORTHO05D007808 5.7e-31 137.9 163 46.6
Sc20g0001780 Simmondsia chinensis HOM05D006193 ORTHO05D007808 2.8e-30 135.6 127 55.9
arahy.Tifrunner.gnm1.ann1.D81QGL Arachis hypogaea HOM05D006193 ORTHO05D007808 1.1e-29 133.7 105 66.7
Rhsim03G0119300 Rhododendron simsii HOM05D006193 ORTHO05D007808 1.4e-29 133.3 200 42.5
Sabra10G0173000 Salix brachista HOM05D006193 ORTHO05D007808 1.4e-29 133.3 163 47.9
arahy.Tifrunner.gnm1.ann1.N5AHK9 Arachis hypogaea HOM05D006193 ORTHO05D007808 3.1e-29 132.1 105 65.7
EL10Ac7g18239 Beta vulgaris HOM05D006193 ORTHO05D007808 5.9e-28 127.9 122 55.7
Psat6g182760 Pisum sativum HOM05D006193 ORTHO05D007808 7.7e-28 127.5 103 63.1
Ca_10561_v3 Cicer arietinum L. HOM05D006193 ORTHO05D007808 6.5e-27 124.4 80 76.2
Mapoly0038s0090 Marchantia polymorpha HOM05D006193 ORTHO05D007808 6.1e-25 117.9 104 52.9
AUR62001381 Chenopodium quinoa HOM05D006193 ORTHO05D007808 3.0e-24 115.5 75 70.7
BolC3t19959H Brassica oleracea HOM05D006193 ORTHO05D007808 6.8e-24 114.4 80 77.5
Ah.08g217480 Amaranthus hybridus HOM05D006193 ORTHO05D007808 4.4e-23 111.7 87 64.4
FAN19G2294 Fragaria x ananassa HOM05D006193 ORTHO05D007808 1.8e-21 106.3 80 67.5
vmacro07063 Vaccinium macrocarpon HOM05D006193 ORTHO05D007808 2.0e-20 102.8 61 78.7
CsaV3_5G036210 Cucumis sativus L. HOM05D006193 ORTHO05D007808 2.3e-19 99.4 67 67.2
Medtr1g094840 Medicago truncatula HOM05D006193 ORTHO05D007808 1.1e-18 97.1 62 72.6
MBI07_g30981_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 2.1e-17 92.8 114 45.6
FAN06G3393 Fragaria x ananassa HOM05D006193 ORTHO05D007808 2.8e-17 92.4 61 67.2
AagrBONN_evm.TU.Sc2ySwM_228.264 Anthoceros agrestis HOM05D006193 ORTHO05D007808 4.0e-16 88.6 104 43.3
Lsat_1_v5_gn_2_8120 Lactuca sativa HOM05D006193 ORTHO05D007808 1.2e-15 87.0 93 51.6
SMO232G0066 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 9.8e-15 84.0 101 36.6
EL10Ac7g17093 Beta vulgaris HOM05D006193 ORTHO05D007808 6.3e-14 81.3 61 63.9
Pp3c5_20880 Physcomitrium patens HOM05D006193 ORTHO05D007808 1.8e-13 79.7 102 37.3
SMO241G0021 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 1.6e-12 76.6 93 34.4
Potri.008G038500 Populus trichocarpa HOM05D006193 ORTHO05D007808 6.6e-11 71.2 57 59.6
Nitab4.5_0005501g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 3.3e-10 68.9 93 41.9
vmacro07064 Vaccinium macrocarpon HOM05D006193 ORTHO05D007808 9.5e-10 67.4 63 57.1


User provided reference genes

Program Settings