Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 5.0e-299 1030.4 543 100.0
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 6.1e-289 996.9 544 97.2
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 1.4e-288 995.7 545 97.1
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 6.7e-288 993.4 544 96.9
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.2e-276 956.1 547 94.0
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 4.1e-269 931.0 559 88.7
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 2.8e-265 918.3 559 86.8
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 6.8e-264 913.7 556 87.1
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.0e-263 912.1 556 87.1
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 9.8e-263 909.8 558 86.2
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 5.9e-260 900.6 558 85.3
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 2.8e-249 865.1 550 82.4
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 8.6e-235 817.0 552 77.0
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.1e-228 795.8 559 75.1
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 4.3e-202 708.4 534 70.4
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 8.2e-201 704.1 539 68.5
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 3.8e-198 695.3 558 66.5
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 1.4e-197 693.3 535 68.0
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 2.5e-197 692.6 545 67.0
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 4.6e-196 688.3 544 67.1
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 1.8e-195 686.4 534 68.7
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 3.0e-195 685.6 536 68.3
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.1e-194 683.7 534 69.1
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 4.3e-194 681.8 541 68.2
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 4.3e-194 681.8 541 68.2
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 3.7e-193 678.7 551 65.0
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 6.3e-193 677.9 540 68.0
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 8.2e-193 677.6 544 67.1
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.1e-192 677.2 540 67.8
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 1.1e-192 677.2 551 67.5
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 4.1e-192 675.2 551 65.0
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 6.9e-192 674.5 550 66.5
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.5e-191 673.3 540 67.4
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 3.4e-191 672.2 541 67.1
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 1.0e-190 670.6 541 66.7
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 3.8e-190 668.7 544 65.4
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 1.4e-189 666.8 546 65.6
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 4.2e-189 665.2 535 66.5
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 9.4e-189 664.1 526 67.5
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 7.9e-188 661.0 520 66.9
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.4e-187 660.2 505 69.5
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 8.8e-187 657.5 552 64.1
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 1.5e-186 656.8 555 63.2
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 2.0e-186 656.4 504 67.9
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 3.3e-186 655.6 533 65.1
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 1.3e-185 653.7 554 63.4
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 2.2e-185 652.9 533 64.5
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 2.8e-185 652.5 529 66.2
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 3.7e-185 652.1 530 66.0
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 4.8e-185 651.7 510 66.5
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 4.8e-185 651.7 545 64.0
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 6.3e-185 651.4 501 69.5
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 1.1e-184 650.6 534 64.2
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 1.8e-184 649.8 534 63.9
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 3.1e-184 649.0 535 64.1
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 4.1e-184 648.7 539 65.3
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 1.2e-183 647.1 529 65.4
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 1.2e-183 647.1 567 63.3
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 2.2e-182 642.9 539 64.9
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 2.9e-182 642.5 538 63.9
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 2.9e-182 642.5 539 64.7
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 6.5e-182 641.3 558 63.3
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 1.1e-181 640.6 550 61.8
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 5.5e-181 638.3 566 63.1
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 7.2e-181 637.9 551 64.6
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 9.4e-181 637.5 556 62.4
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 2.1e-180 636.3 552 63.4
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 2.7e-180 636.0 556 62.4
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 4.7e-180 635.2 556 62.1
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 6.1e-180 634.8 542 64.0
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 1.4e-179 633.6 541 63.8
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 1.4e-179 633.6 583 61.2
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 2.3e-179 632.9 554 61.2
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 2.6e-178 629.4 541 63.4
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 2.2e-177 626.3 520 67.5
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 8.2e-177 624.4 544 62.7
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 1.8e-176 623.2 539 62.7
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 2.4e-176 622.9 468 69.2
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 3.1e-176 622.5 563 60.6
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 4.1e-176 622.1 341 95.9
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 2.6e-175 619.4 526 62.2
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 4.5e-175 618.6 551 60.3
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 5.9e-175 618.2 524 63.0
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 6.5e-174 614.8 552 61.1
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 9.4e-173 610.9 551 61.7
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 2.7e-172 609.4 530 62.1
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 1.0e-171 607.4 553 60.0
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 2.0e-170 603.2 603 56.6
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 1.7e-169 600.1 534 61.8
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 1.7e-169 600.1 549 61.7
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 1.0e-166 590.9 545 59.3
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 5.0e-166 588.6 563 58.8
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 1.6e-164 583.6 490 62.2
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 6.8e-163 578.2 534 59.4
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 7.5e-154 548.1 442 65.4
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 4.1e-152 542.3 578 54.7
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.1e-141 507.7 593 48.2
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.8e-140 503.1 502 57.0
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.1e-128 464.5 384 68.8
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 7.1e-128 461.8 494 55.1
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 4.6e-127 459.1 525 51.2
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.4e-123 447.6 388 63.4
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 2.2e-121 440.3 479 52.0
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 6.8e-115 418.7 345 64.1
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 6.8e-115 418.7 454 53.3
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 1.2e-111 407.9 520 42.7
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 4.6e-111 406.0 299 69.2
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.3e-109 399.8 299 69.6
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 6.2e-108 395.6 335 65.1
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 3.8e-105 386.3 306 67.6
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 2.7e-103 380.2 306 67.0
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 8.1e-100 368.6 276 69.2
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 5.5e-96 355.9 386 52.8
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 7.1e-96 355.5 347 55.9
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 1.2e-95 354.8 347 55.9
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 1.5e-90 337.8 573 38.4
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 3.7e-84 316.6 561 36.9
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 8.4e-81 305.4 269 61.3
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 7.9e-79 298.9 518 37.3
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 2.5e-72 277.3 220 67.3
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 2.3e-62 244.2 166 71.7
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 2.7e-50 204.1 570 30.4
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 7.7e-50 202.6 186 55.4
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 1.7e-44 184.9 183 55.7
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 1.5e-40 171.8 247 46.2
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 2.0e-34 151.4 117 67.5
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 4.5e-34 150.2 361 27.4
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 2.3e-33 147.9 423 27.2
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 9.5e-32 142.5 412 29.9
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.1e-24 119.0 540 24.6
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.9e-24 118.2 91 67.0
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 9.5e-24 115.9 84 66.7
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 2.8e-23 114.4 352 27.3
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 9.8e-21 105.9 71 70.4
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.9e-19 101.7 149 41.6
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 4.6e-18 97.1 130 46.9
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 6.6e-17 93.2 514 23.7
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.5e-16 92.0 441 23.1
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.2e-15 89.0 143 39.9
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 6.4e-12 76.6 448 22.5
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 3.5e-10 70.9 225 30.2
Cre01.g021500 Chlamydomonas reinhardtii HOM05D003356 ORTHO05D004362 7.3e-08 63.2 230 26.5
Pp3c18_21450 Physcomitrium patens HOM05D002512 ORTHO05D002660 9.5e-08 62.8 226 27.9
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 4.7e-07 60.5 226 24.3
MD08G1139200 Malus domestica HOM05D005160 ORTHO05D006127 5.2e-06 57.0 117 42.7
Mapoly0029s0041 Marchantia polymorpha HOM05D002512 ORTHO05D002660 6.8e-06 56.6 217 21.7
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 6.8e-06 56.6 44 61.4


User provided reference genes

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