Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 2.0e-64 249.2 153 100.0
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 2.0e-64 249.2 153 88.2
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 1.9e-54 216.1 154 90.9
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 5.0e-47 191.4 146 75.3
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 7.2e-46 187.6 156 82.1
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 5.2e-28 128.3 155 52.3
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 8.9e-28 127.5 162 59.3
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.6e-27 125.9 146 56.8
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 3.4e-27 125.6 172 52.3
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 9.8e-27 124.0 166 51.8
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.3e-26 123.6 150 59.3
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 4.9e-26 121.7 173 46.8
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 7.1e-17 91.3 80 60.0
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.6e-16 90.1 72 68.1
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 1.6e-16 90.1 75 64.0
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 2.1e-16 89.7 73 67.1
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 4.6e-16 88.6 76 64.5
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.6e-16 88.6 77 62.3
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.6e-16 88.6 77 62.3
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.0e-15 87.4 73 67.1
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.3e-15 87.0 78 60.3
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 1.3e-15 87.0 74 66.2
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.3e-15 87.0 78 61.5
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.7e-15 86.7 78 59.0
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.7e-15 86.7 73 67.1
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 1.7e-15 86.7 73 65.8
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 2.3e-15 86.3 77 59.7
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 2.3e-15 86.3 84 58.3
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 3.0e-15 85.9 75 62.7
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 3.0e-15 85.9 75 62.7
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 5.1e-15 85.1 76 61.8
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 1.5e-14 83.6 92 55.4
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.5e-14 83.6 77 57.1
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 2.5e-14 82.8 76 60.5
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 5.6e-14 81.6 75 61.3
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.6e-14 81.6 75 61.3
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.6e-14 81.6 75 61.3
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.6e-14 81.6 75 61.3
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.6e-14 81.6 75 61.3
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 7.3e-14 81.3 77 58.4
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 9.5e-14 80.9 74 62.2
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 9.5e-14 80.9 78 57.7
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.2e-13 80.5 75 60.0
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.6e-13 80.1 77 57.1
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.6e-13 80.1 77 57.1
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 2.1e-13 79.7 66 65.2
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 2.1e-13 79.7 73 60.3
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 2.1e-13 79.7 75 58.7
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.8e-13 79.3 76 57.9
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 2.8e-13 79.3 77 55.8
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 3.6e-13 79.0 76 57.9
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.7e-13 78.6 72 61.1
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 4.7e-13 78.6 75 57.3
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 6.2e-13 78.2 78 56.4
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 8.1e-13 77.8 72 61.1
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 8.1e-13 77.8 78 56.4
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.1e-12 77.4 77 54.5
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 2.3e-12 76.3 68 66.2
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 3.1e-12 75.9 78 55.1
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 5.2e-12 75.1 79 54.4
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 6.8e-12 74.7 78 55.1
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.2e-11 73.9 78 55.1
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.2e-11 73.9 67 62.7
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 3.4e-11 72.4 78 55.1
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 3.4e-11 72.4 67 58.2
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 7.6e-11 71.2 66 62.1
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 9.9e-11 70.9 67 59.7
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.3e-10 70.5 70 60.0
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.7e-10 70.1 77 51.9
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.7e-10 70.1 67 58.2
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.2e-10 69.7 77 54.5
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 3.8e-10 68.9 74 55.4
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 3.8e-10 68.9 78 53.8
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 3.8e-10 68.9 78 51.3
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 3.8e-10 68.9 67 58.2
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 6.4e-10 68.2 66 54.5
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 8.4e-10 67.8 60 65.0
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.1e-09 67.4 70 51.4
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.1e-09 67.4 65 53.8
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.4e-09 67.0 66 60.6
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.9e-09 66.6 64 57.8
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.4e-09 66.2 66 57.6
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.4e-09 66.2 68 50.0
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 3.2e-09 65.9 66 60.6
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.2e-09 65.9 76 51.3
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 4.1e-09 65.5 63 57.1
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 4.1e-09 65.5 66 56.1
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.2e-08 63.9 74 51.4
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 1.2e-08 63.9 58 62.1
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.2e-08 63.9 66 57.6
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.2e-08 63.9 63 55.6
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.2e-08 63.9 63 55.6
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.1e-08 63.2 66 54.5
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 2.1e-08 63.2 66 54.5
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.6e-08 62.0 61 54.1
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 6.0e-08 61.6 70 48.6
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 7.8e-08 61.2 73 47.9
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 7.8e-08 61.2 66 48.5
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 7.8e-08 61.2 67 47.8
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.0e-07 60.8 51 66.7
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 1.0e-07 60.8 70 48.6
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.3e-07 60.5 53 64.2
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.3e-07 60.5 57 61.4
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 2.3e-07 59.7 76 46.1
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.0e-07 59.3 70 45.7
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 3.0e-07 59.3 79 45.6
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 3.9e-07 58.9 67 47.8
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 3.9e-07 58.9 78 46.2
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 3.9e-07 58.9 67 50.7
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.9e-07 58.9 77 51.9
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 5.1e-07 58.5 63 50.8
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.5e-06 57.0 51 64.7
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.5e-06 57.0 70 44.3
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.5e-06 57.0 70 44.3
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.9e-06 56.6 64 53.1
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.9e-06 56.6 70 44.3
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.9e-06 56.6 65 49.2
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 2.5e-06 56.2 79 44.3
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.5e-06 56.2 66 50.0
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.3e-06 55.8 68 47.1
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.3e-06 55.8 64 46.9
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 3.3e-06 55.8 66 50.0
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 4.3e-06 55.5 64 51.6
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 5.6e-06 55.1 70 44.3
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 7.3e-06 54.7 66 51.5
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 9.6e-06 54.3 80 40.0


User provided reference genes

Program Settings