Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 0.0e+00 1200.3 657 100.0
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 0.0e+00 1077.4 652 93.4
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 2.1e-299 1031.9 658 89.7
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 3.5e-299 1031.2 661 89.6
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 4.3e-297 1024.2 662 89.3
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 1.3e-277 959.5 676 82.4
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 4.2e-252 874.8 688 76.0
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 5.2e-242 841.3 678 73.9
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 5.9e-238 827.8 682 71.3
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 5.6e-228 794.7 681 70.2
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 7.3e-228 794.3 685 70.1
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 2.7e-214 749.2 679 67.0
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 4.0e-202 708.8 677 64.0
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 4.3e-196 688.7 682 60.7
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 7.4e-140 501.9 677 50.5
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 1.1e-138 498.0 691 50.7
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 9.1e-138 495.0 685 50.2
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.6e-137 494.2 675 50.8
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 7.7e-137 491.9 716 49.3
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 2.2e-136 490.3 715 47.0
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.2e-135 486.5 682 48.8
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 2.1e-134 483.8 682 48.8
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 3.3e-132 476.5 709 49.1
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 2.0e-129 467.2 689 47.0
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 1.1e-127 461.5 601 49.8
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 2.7e-126 456.8 666 47.1
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 1.2e-124 451.4 704 44.7
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 2.8e-123 446.8 757 44.4
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 4.8e-123 446.0 609 49.9
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 5.4e-122 442.6 479 57.2
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 7.0e-122 442.2 682 46.9
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 5.9e-121 439.1 673 46.5
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 1.0e-120 438.3 687 46.0
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 8.6e-120 435.3 682 45.6
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 4.2e-119 433.0 662 47.1
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 5.5e-119 432.6 683 43.6
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 1.0e-117 428.3 677 46.4
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 1.0e-117 428.3 716 44.0
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.4e-117 427.9 447 56.2
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 3.0e-117 426.8 682 44.9
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 8.9e-117 425.2 685 43.6
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 7.5e-116 422.2 676 43.8
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 6.3e-115 419.1 587 48.4
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.1e-114 418.3 694 43.1
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 1.2e-113 414.8 622 45.5
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 5.9e-113 412.5 683 44.8
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 5.9e-113 412.5 710 43.4
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 1.7e-112 411.0 679 43.7
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 1.5e-111 407.9 745 42.1
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 1.5e-111 407.9 705 43.4
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 2.5e-111 407.1 405 58.8
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 9.5e-111 405.2 361 63.2
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 1.6e-110 404.4 695 43.2
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 1.6e-110 404.4 683 43.9
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 1.4e-109 401.4 602 45.5
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 1.8e-109 401.0 652 43.9
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.2e-108 398.3 681 43.6
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 2.2e-107 394.0 690 43.2
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 2.2e-107 394.0 708 42.1
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 4.9e-107 392.9 661 42.8
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 8.3e-107 392.1 361 62.3
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 1.1e-106 391.7 691 43.3
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 3.2e-106 390.2 687 42.9
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 5.4e-106 389.4 685 43.4
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 1.2e-105 388.3 686 41.7
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 1.2e-105 388.3 578 45.3
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 2.7e-105 387.1 688 42.2
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 1.3e-104 384.8 686 42.4
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 1.7e-104 384.4 700 42.0
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 1.1e-103 381.7 693 42.6
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.5e-103 381.3 644 43.2
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 9.5e-103 378.6 697 41.3
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 2.1e-102 377.5 623 44.5
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 8.0e-102 375.6 674 41.4
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 1.1e-101 375.2 697 41.6
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 2.3e-101 374.0 667 41.2
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 5.2e-101 372.9 606 45.2
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 8.9e-101 372.1 646 42.6
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 1.2e-100 371.7 628 44.1
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 2.6e-100 370.5 703 42.1
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 2.2e-99 367.5 615 42.0
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 4.9e-99 366.3 402 56.5
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 7.8e-97 359.0 689 40.9
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.7e-96 357.8 687 41.6
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 3.3e-95 353.6 616 41.9
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 1.2e-94 351.7 592 43.6
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 1.8e-93 347.8 660 40.0
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.2e-93 346.3 608 42.4
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.2e-93 346.3 608 42.4
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 8.9e-93 345.5 432 50.2
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 4.4e-92 343.2 693 42.0
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.3e-91 341.7 376 54.5
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.7e-91 341.3 597 41.7
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 8.3e-91 339.0 634 40.5
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.9e-90 337.8 572 43.5
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.9e-90 337.8 618 41.7
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 2.5e-87 327.4 672 38.4
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 6.2e-86 322.8 424 47.4
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.1e-82 312.0 597 40.7
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 4.3e-79 300.1 652 37.1
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 2.1e-78 297.7 542 40.0
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 7.6e-76 289.3 649 37.0
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 1.9e-71 274.6 624 36.5
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 1.1e-66 258.8 294 56.8
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 6.0e-57 226.5 295 48.1
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 3.0e-56 224.2 336 41.4
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 2.1e-54 218.0 248 57.3
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 9.3e-50 202.6 393 38.7
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 5.7e-47 193.4 557 32.0
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 9.7e-47 192.6 240 50.4
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 4.8e-46 190.3 216 53.7
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 1.7e-43 181.8 591 29.1
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.7e-43 181.8 544 29.2
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 5.0e-43 180.3 111 84.7
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 4.2e-42 177.2 406 36.9
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 1.2e-41 175.6 112 83.9
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 2.0e-39 168.3 523 29.3
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 2.2e-38 164.9 147 59.9
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 6.1e-33 146.7 136 62.5
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 7.9e-33 146.4 90 83.3
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 8.8e-32 142.9 135 58.5
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 4.4e-31 140.6 141 55.3
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 1.3e-30 139.0 442 33.5
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 2.8e-30 137.9 141 53.9
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 7.7e-28 129.8 443 32.3
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 2.5e-26 124.8 88 72.7
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 3.7e-22 110.9 87 66.7
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 1.1e-21 109.4 141 46.8
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 3.5e-20 104.4 238 33.6
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 1.0e-19 102.8 140 45.7
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 1.3e-19 102.4 141 45.4
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.9e-19 101.3 130 45.4
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 5.0e-19 100.5 519 26.4
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 9.4e-18 96.3 116 52.6
BraA01t00065Z Brassica rapa HOM05D004921 ORTHO05D006008 5.3e-13 80.5 60 81.7
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 4.0e-08 64.3 328 30.2
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 7.5e-07 60.1 358 25.7


User provided reference genes

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