Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p23250 Brassica napus HOM05D005812 ORTHO05D007232 1.7e-126 456.1 237 100.0
BraA08t34281Z Brassica rapa HOM05D005812 ORTHO05D007232 8.4e-126 453.8 237 99.2
BcaC01g00328 Brassica carinata HOM05D005812 ORTHO05D007232 2.7e-124 448.7 237 97.9
BolC3t20101H Brassica oleracea HOM05D005812 ORTHO05D007232 3.0e-123 445.3 237 97.5
C03p78490 Brassica napus HOM05D005812 ORTHO05D007232 6.6e-123 444.1 237 97.0
Thhalv10026058m.g Eutrema salsugineum HOM05D005812 ORTHO05D007232 1.1e-104 383.6 250 84.4
BcaB03g12290 Brassica carinata HOM05D005812 ORTHO05D007232 1.8e-104 382.9 240 87.9
Sp7g35990 Schrenkiella parvula HOM05D005812 ORTHO05D007232 3.1e-104 382.1 241 85.5
AT4G39900 Arabidopsis thaliana HOM05D005812 ORTHO05D007232 1.9e-101 372.9 242 84.3
Carub.0007s0184 Capsella rubella HOM05D005812 ORTHO05D007232 1.9e-101 372.9 239 83.3
CARHR246800 Cardamine hirsuta HOM05D005812 ORTHO05D007232 6.5e-94 347.8 238 80.3
A01p00790 Brassica napus HOM05D005812 ORTHO05D007232 6.7e-91 337.8 241 78.4
BraA01t00082Z Brassica rapa HOM05D005812 ORTHO05D007232 4.3e-90 335.1 244 77.5
C01p00910 Brassica napus HOM05D005812 ORTHO05D007232 1.8e-88 329.7 246 77.2
BcaNung00911 Brassica carinata HOM05D005812 ORTHO05D007232 4.5e-87 325.1 247 76.9
BcaNung06391 Brassica carinata HOM05D005812 ORTHO05D007232 1.7e-86 323.2 244 76.2
THA.LOC104807691 Tarenaya hassleriana HOM05D005812 ORTHO05D007232 6.5e-86 321.2 248 71.0
AL7G12150 Arabidopsis lyrata HOM05D005812 ORTHO05D007232 5.5e-77 291.6 176 89.8
Cpa.g.sc230.1 Carica papaya HOM05D005812 ORTHO05D007232 3.0e-59 232.6 243 53.9
Atru.chr4.60 Acer truncatum HOM05D005812 ORTHO05D007232 1.2e-58 230.7 246 53.7
Aa31LG6G15360 Aethionema arabicum HOM05D000249 ORTHO05D000206 2.4e-56 223.0 166 74.1
CARHR113520 Cardamine hirsuta HOM05D005812 ORTHO05D007232 4.5e-55 218.8 148 77.7
Thecc.01G101100 Theobroma cacao HOM05D005812 ORTHO05D007232 7.7e-55 218.0 233 56.2
Ciclev10026269m.g Citrus clementina HOM05D005812 ORTHO05D007232 1.9e-53 213.4 277 49.5
Gohir.D11G221400 Gossypium hirsutum HOM05D005812 ORTHO05D007232 2.8e-52 209.5 240 52.1
Gorai.007G238400 Gossypium raimondii HOM05D005812 ORTHO05D007232 2.8e-52 209.5 240 52.1
Duzib147G1550 Durio zibethinus HOM05D005812 ORTHO05D007232 3.6e-52 209.1 248 50.8
BcaNung00793 Brassica carinata HOM05D005812 ORTHO05D007232 4.7e-52 208.8 134 85.1
Duzib264G1072 Durio zibethinus HOM05D005812 ORTHO05D007232 2.6e-50 203.0 234 52.6
Gorai.011G113200 Gossypium raimondii HOM05D005812 ORTHO05D007232 1.3e-49 200.7 235 49.8
BolC1t00091H Brassica oleracea HOM05D000249 ORTHO05D000206 7.0e-48 194.9 167 70.1
Cfa002656 Carpinus fangiana HOM05D005812 ORTHO05D007232 1.2e-47 194.1 258 48.8
Gohir.A10G085300 Gossypium hirsutum HOM05D005812 ORTHO05D007232 3.5e-47 192.6 235 48.5
Gohir.D10G103600 Gossypium hirsutum HOM05D005812 ORTHO05D007232 3.5e-47 192.6 235 48.5
Duzib187G0152 Durio zibethinus HOM05D005812 ORTHO05D007232 5.9e-47 191.8 226 51.3
Gorai.008G090000 Gossypium raimondii HOM05D005812 ORTHO05D007232 7.8e-47 191.4 233 51.5
Gohir.A12G083366 Gossypium hirsutum HOM05D005812 ORTHO05D007232 9.5e-45 184.5 223 49.8
Gohir.A11G201100 Gossypium hirsutum HOM05D005812 ORTHO05D007232 6.1e-44 181.8 290 43.1
CiPaw.04G099800 Carya illinoinensis HOM05D005812 ORTHO05D007232 2.6e-42 176.4 263 46.4
GSVIVG01002272001 Vitis vinifera HOM05D005812 ORTHO05D007232 4.4e-42 175.6 259 43.6
QL06p049491 Quercus lobata HOM05D005812 ORTHO05D007232 5.8e-42 175.3 257 45.5
CiPaw.03G142200 Carya illinoinensis HOM05D005812 ORTHO05D007232 7.5e-42 174.9 244 46.3
Potri.007G093200 Populus trichocarpa HOM05D005812 ORTHO05D007232 3.9e-38 162.5 238 44.1
PGR102G1433 Punica granatum HOM05D005812 ORTHO05D007232 1.5e-37 160.6 266 40.2
Prupe.6G187400 Prunus persica HOM05D005812 ORTHO05D007232 5.2e-35 152.1 246 41.9
TAR628G0897 Trochodendron aralioides HOM05D005812 ORTHO05D007232 5.2e-35 152.1 264 39.4
CANSAT01G0800 Cannabis sativa HOM05D005812 ORTHO05D007232 8.9e-35 151.4 231 44.2
MD15G1323600 Malus domestica HOM05D005812 ORTHO05D007232 3.7e-33 146.0 241 41.1
Haze_24926 Corylus avellana HOM05D005812 ORTHO05D007232 6.4e-33 145.2 229 43.2
Lj6g0021205 Lotus japonicus HOM05D005812 ORTHO05D007232 1.1e-32 144.4 234 40.2
ClCG10G008980 Citrullus lanatus HOM05D005812 ORTHO05D007232 1.4e-32 144.1 220 41.8
Dinv21904 Davidia involucrata HOM05D005812 ORTHO05D007232 4.1e-32 142.5 172 50.0
TPR.G17850 Trifolium pratense HOM05D005812 ORTHO05D007232 4.1e-32 142.5 228 41.2
RcHm_v2.0_Chr2g0113441 Rosa chinensis HOM05D005812 ORTHO05D007232 1.2e-31 141.0 249 41.8
Manes.12G134500 Manihot esculenta HOM05D005812 ORTHO05D007232 2.1e-31 140.2 237 39.7
Sed0017830 Sechium edule HOM05D005812 ORTHO05D007232 2.7e-31 139.8 215 42.3
FvH4_1g20820 Fragaria vesca HOM05D005812 ORTHO05D007232 6.0e-31 138.7 256 41.0
Glyma.11G240400 Glycine max HOM05D005812 ORTHO05D007232 7.8e-31 138.3 244 40.6
Medtr3g087150 Medicago truncatula HOM05D005812 ORTHO05D007232 3.9e-30 136.0 236 39.4
Eucgr.H04782 Eucalyptus grandis HOM05D005812 ORTHO05D007232 8.6e-30 134.8 259 36.3
VMungo1383G2465 Vigna mungo HOM05D005812 ORTHO05D007232 5.6e-29 132.1 244 38.9
Actinidia06567 Actinidia chinensis HOM05D005812 ORTHO05D007232 7.3e-29 131.7 216 39.8
Phvul.001G252300 Phaseolus vulgaris HOM05D005812 ORTHO05D007232 1.2e-28 131.0 244 38.5
Psat5g090240 Pisum sativum HOM05D005812 ORTHO05D007232 3.6e-28 129.4 237 39.2
Glyma.18G016900 Glycine max HOM05D005812 ORTHO05D007232 4.7e-28 129.0 235 38.7
arahy.Tifrunner.gnm1.ann1.LSP3Z9 Arachis hypogaea HOM05D005812 ORTHO05D007232 1.1e-27 127.9 225 41.8
arahy.Tifrunner.gnm1.ann1.I4SKYX Arachis hypogaea HOM05D005812 ORTHO05D007232 1.4e-27 127.5 225 41.3
Manes.13G075600 Manihot esculenta HOM05D005812 ORTHO05D007232 2.0e-26 123.6 233 38.6
Actinidia20016 Actinidia chinensis HOM05D005812 ORTHO05D007232 2.6e-26 123.2 186 42.5
Ca_16522_v3 Cicer arietinum L. HOM05D005812 ORTHO05D007232 3.4e-26 122.9 235 36.2
Gohir.D12G083200 Gossypium hirsutum HOM05D005812 ORTHO05D007232 5.4e-24 115.5 185 41.6
Dinv13192 Davidia involucrata HOM05D005812 ORTHO05D007232 7.1e-24 115.2 163 42.9
BcaB02g08758 Brassica carinata HOM05D005812 ORTHO05D007232 1.2e-23 114.4 104 65.4
Rhsim08G0010800 Rhododendron simsii HOM05D005812 ORTHO05D007232 1.0e-22 111.3 188 40.4
Lalb_Chr23g0277481 Lupinus albus HOM05D005812 ORTHO05D007232 2.3e-22 110.2 203 38.4
Nn5g30114 Nelumbo nucifera HOM05D005812 ORTHO05D007232 3.0e-22 109.8 188 41.5
EL10Ac6g15110 Beta vulgaris HOM05D005812 ORTHO05D007232 6.6e-22 108.6 166 43.4
Actinidia28235 Actinidia chinensis HOM05D005812 ORTHO05D007232 2.5e-21 106.7 186 40.9
MBI02_g31269_MAGBIO Magnolia biondii HOM05D005812 ORTHO05D007232 4.3e-21 105.9 222 35.1
Lsat_1_v5_gn_4_141220 Lactuca sativa HOM05D005812 ORTHO05D007232 5.6e-21 105.5 195 42.1
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 5.6e-21 105.5 186 38.7
MSTRG.3778 Avicennia marina HOM05D005812 ORTHO05D007232 6.2e-20 102.1 188 41.0
vmacro18598 Vaccinium macrocarpon HOM05D005812 ORTHO05D007232 6.2e-20 102.1 191 40.3
Peaxi162Scf00212g00413 Petunia axillaris HOM05D005812 ORTHO05D007232 3.1e-19 99.8 190 40.0
AUR62002005 Chenopodium quinoa HOM05D005812 ORTHO05D007232 4.0e-19 99.4 189 38.1
DCAR_014222 Daucus carota HOM05D005812 ORTHO05D007232 5.2e-19 99.0 183 36.1
Hma1.2p1_1428F.1_g282935 Hydrangea macrophylla HOM05D005812 ORTHO05D007232 5.2e-19 99.0 213 37.6
Hund16289 Selenicereus undatus HOM05D005812 ORTHO05D007232 5.2e-19 99.0 192 39.6
Oeu051807.1 Olea europaea HOM05D005812 ORTHO05D007232 5.8e-18 95.5 159 40.9
PSO781G0022 Papaver somniferum HOM05D005812 ORTHO05D007232 9.9e-18 94.7 238 30.7
Cc07_g15160 Coffea canephora HOM05D005812 ORTHO05D007232 2.2e-17 93.6 160 43.1
PSO541G0090 Papaver somniferum HOM05D005812 ORTHO05D007232 2.2e-17 93.6 255 29.8
ECA232G1467 Erigeron canadensis HOM05D005812 ORTHO05D007232 3.8e-17 92.8 192 38.5
Sc03g0002070 Simmondsia chinensis HOM05D005812 ORTHO05D007232 4.9e-17 92.4 172 39.0
Nitab4.5_0000083g0250 Nicotiana tabacum HOM05D005812 ORTHO05D007232 6.4e-17 92.0 185 37.3
Aqoxy6G00789 Aquilegia oxysepala HOM05D005812 ORTHO05D007232 8.4e-17 91.7 188 37.2
AUR62003797 Chenopodium quinoa HOM05D005812 ORTHO05D007232 1.4e-16 90.9 187 36.4
CsaV3_4G008880 Cucumis sativus L. HOM05D005812 ORTHO05D007232 1.4e-16 90.9 151 42.4
TWI74G1407 Tripterygium wilfordii HOM05D005812 ORTHO05D007232 3.2e-16 89.7 180 36.1
HanXRQChr10g0305381 Helianthus annuus HOM05D005812 ORTHO05D007232 5.4e-16 89.0 205 33.7
Nitab4.5_0004651g0010 Nicotiana tabacum HOM05D005812 ORTHO05D007232 1.2e-15 87.8 185 36.8
HanXRQChr05g0145211 Helianthus annuus HOM05D005812 ORTHO05D007232 1.6e-15 87.4 178 34.8
Solyc04g055250.4 Solanum lycopersicum HOM05D005812 ORTHO05D007232 3.5e-15 86.3 192 32.8
Sabra07G0077200 Salix brachista HOM05D005812 ORTHO05D007232 4.6e-15 85.9 146 36.3
Sopen04g025100 Solanum pennellii HOM05D005812 ORTHO05D007232 7.8e-15 85.1 192 32.3
MSTRG.2569 Avicennia marina HOM05D005812 ORTHO05D007232 1.7e-14 84.0 179 35.8
Oeu001791.1 Olea europaea HOM05D005812 ORTHO05D007232 3.9e-14 82.8 135 40.0
FAN23G0105 Fragaria x ananassa HOM05D005812 ORTHO05D007232 1.1e-13 81.3 178 36.5
Migut.L00124 Erythranthe guttata HOM05D005812 ORTHO05D007232 1.5e-13 80.9 185 36.2
FAN19G2427 Fragaria x ananassa HOM05D005812 ORTHO05D007232 1.9e-13 80.5 198 34.8
MSTRG.23345 Avicennia marina HOM05D005812 ORTHO05D007232 7.3e-13 78.6 142 35.9
MELO3C018959.2 Cucumis melo HOM05D005812 ORTHO05D007232 7.3e-13 78.6 94 52.1
DCAR_010089 Daucus carota HOM05D005812 ORTHO05D007232 7.3e-13 78.6 183 32.8
MSTRG.15713 Avicennia marina HOM05D005812 ORTHO05D007232 9.6e-13 78.2 179 37.4
ECA232G0795 Erigeron canadensis HOM05D005812 ORTHO05D007232 9.6e-13 78.2 186 33.3
Nitab4.5_0000897g0060 Nicotiana tabacum HOM05D005812 ORTHO05D007232 1.3e-12 77.8 184 33.7
vmacro12958 Vaccinium macrocarpon HOM05D005812 ORTHO05D007232 2.1e-12 77.0 168 32.1
Ah.02g122540 Amaranthus hybridus HOM05D005812 ORTHO05D007232 4.8e-12 75.9 184 34.8
HanXRQChr09g0254761 Helianthus annuus HOM05D005812 ORTHO05D007232 1.1e-11 74.7 191 34.6
SalBow5G0456 Salvia bowleyana HOM05D005812 ORTHO05D007232 5.3e-11 72.4 216 31.5
Peaxi162Scf00611g00015 Petunia axillaris HOM05D005812 ORTHO05D007232 1.5e-10 70.9 62 58.1
unitig_32.g11811 Utricularia gibba HOM05D005812 ORTHO05D007232 3.4e-10 69.7 164 34.1
CAN.G18.15 Capsicum annuum HOM05D005812 ORTHO05D007232 1.3e-09 67.8 156 34.6
CAN.G18.16 Capsicum annuum HOM05D005812 ORTHO05D007232 1.3e-09 67.8 156 34.6
Lj2C549G6 Lonicera japonica HOM05D005812 ORTHO05D007232 1.1e-08 64.7 106 38.7
Rhsim10G0163100 Rhododendron simsii HOM05D001481 ORTHO05D001865 1.1e-08 64.7 77 42.9
Ah.03g143620 Amaranthus hybridus HOM05D005812 ORTHO05D007232 4.2e-08 62.8 168 32.7
unitig_88.g27721 Utricularia gibba HOM05D005812 ORTHO05D007232 4.2e-08 62.8 98 42.9
PGSC0003DMG400001876 Solanum tuberosum HOM05D005812 ORTHO05D007232 5.4e-08 62.4 167 28.1
SalBow5G2541 Salvia bowleyana HOM05D005812 ORTHO05D007232 1.6e-07 60.8 148 34.5


User provided reference genes

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