Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 1.4e-63 246.1 123 100.0
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 1.8e-63 245.7 123 99.2
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 8.9e-63 243.4 123 98.4
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 8.9e-63 243.4 123 98.4
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 8.9e-63 243.4 123 98.4
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.3e-61 239.6 123 95.9
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 4.9e-61 237.7 123 94.3
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 4.9e-61 237.7 123 94.3
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.9e-61 237.7 124 96.0
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 8.4e-61 236.9 123 94.3
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 8.4e-61 236.9 123 94.3
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 1.4e-60 236.1 124 95.2
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 2.4e-60 235.3 123 94.3
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 5.4e-60 234.2 124 94.4
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 7.1e-60 233.8 124 94.4
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.6e-59 232.6 123 93.5
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.1e-59 232.3 123 92.7
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.6e-59 231.1 123 91.9
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 4.6e-59 231.1 124 91.9
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 4.6e-59 231.1 124 93.5
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 6.0e-59 230.7 124 91.9
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 6.0e-59 230.7 124 93.5
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 6.0e-59 230.7 124 91.9
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 6.0e-59 230.7 124 91.9
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 7.8e-59 230.3 123 92.7
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 1.3e-58 229.6 123 91.1
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 3.9e-58 228.0 124 91.1
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 3.9e-58 228.0 124 91.1
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 6.6e-58 227.3 124 91.1
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 9.6e-49 196.8 124 80.6
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.6e-43 179.5 126 75.4
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 2.3e-42 175.6 126 73.8
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.3e-42 175.6 126 71.4
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.7e-42 174.1 126 72.2
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 7.4e-41 170.6 126 71.4
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.1e-39 166.8 126 69.8
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.0e-30 136.0 132 59.1
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.1e-28 130.2 123 61.0
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.7e-27 125.6 127 58.3
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 4.5e-22 108.2 125 48.0
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.5e-21 104.4 122 49.2
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.4e-20 103.2 102 54.9
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 4.2e-20 101.7 125 50.4
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 4.2e-20 101.7 121 47.9
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 7.2e-20 100.9 121 47.9
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 1.2e-19 100.1 126 46.8
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 1.6e-19 99.8 134 47.8
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 1.6e-19 99.8 121 47.1
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 1.6e-19 99.8 121 48.8
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 4.6e-19 98.2 116 48.3
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 6.1e-19 97.8 122 47.5
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 7.9e-19 97.4 117 47.9
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 1.0e-18 97.1 119 45.4
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.0e-18 97.1 122 47.5
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 1.4e-18 96.7 115 47.8
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 3.9e-18 95.1 136 47.8
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 5.1e-18 94.7 132 43.9
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 6.7e-18 94.4 126 44.4
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 8.8e-18 94.0 137 44.5
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 8.8e-18 94.0 135 42.2
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 8.8e-18 94.0 122 46.7
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 8.8e-18 94.0 121 44.6
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 1.1e-17 93.6 134 44.0
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 1.1e-17 93.6 126 45.2
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.5e-17 93.2 123 46.3
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 1.5e-17 93.2 119 45.4
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.5e-17 93.2 137 43.8
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.5e-17 93.2 137 43.8
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 1.9e-17 92.8 122 45.9
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 2.5e-17 92.4 126 43.7
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 3.3e-17 92.0 126 45.2
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 9.7e-17 90.5 121 45.5
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 9.7e-17 90.5 140 42.9
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.7e-16 89.7 117 45.3
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 1.7e-16 89.7 127 44.9
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.7e-16 89.7 126 42.9
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 2.2e-16 89.4 126 44.4
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 2.8e-16 89.0 127 46.5
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 2.8e-16 89.0 126 42.9
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 3.7e-16 88.6 123 44.7
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 4.8e-16 88.2 142 41.5
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 6.3e-16 87.8 128 43.0
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 6.3e-16 87.8 119 46.2
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 8.2e-16 87.4 133 45.1
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.1e-15 87.0 133 40.6
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 1.1e-15 87.0 133 39.8
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.4e-15 86.7 129 45.7
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.4e-15 86.7 125 42.4
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 2.4e-15 85.9 135 40.7
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 2.4e-15 85.9 125 42.4
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 2.4e-15 85.9 131 47.3
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 2.4e-15 85.9 122 44.3
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-15 85.5 128 42.2
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.3e-15 84.7 134 42.5
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 9.1e-15 84.0 125 44.0
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-14 83.6 129 41.9
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-14 83.6 129 41.9
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 1.2e-14 83.6 129 41.9
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.0e-14 82.8 131 40.5
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.4e-14 82.0 131 39.7
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 3.4e-14 82.0 126 43.7
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 3.4e-14 82.0 124 43.5
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 7.7e-14 80.9 130 40.0
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 7.7e-14 80.9 130 40.0
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.3e-13 80.1 129 43.4
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.3e-13 80.1 129 38.0
AT2G18200 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.9e-13 79.0 81 56.8
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 2.9e-13 79.0 128 36.7
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.9e-13 79.0 131 39.7
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.9e-13 79.0 131 40.5
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 3.8e-13 78.6 135 41.5
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 8.5e-13 77.4 119 42.9
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 1.1e-12 77.0 131 40.5
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 1.1e-12 77.0 121 43.0
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 2.5e-12 75.9 114 38.6
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 2.5e-12 75.9 131 38.2
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 3.2e-12 75.5 123 40.7
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 3.2e-12 75.5 123 40.7
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 4.2e-12 75.1 130 40.0
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 5.5e-12 74.7 125 41.6
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 7.2e-12 74.3 131 39.7
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 9.4e-12 73.9 130 35.4
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 9.4e-12 73.9 130 35.4
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 9.4e-12 73.9 130 35.4
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.6e-11 73.2 112 41.1
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 1.6e-11 73.2 112 41.1
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.6e-11 73.2 144 36.8
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.7e-11 72.4 127 41.7
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 3.6e-11 72.0 95 44.2
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.0e-10 70.5 125 37.6
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.4e-10 70.1 124 37.1
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 2.3e-10 69.3 130 37.7
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.9e-10 68.6 129 37.2
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.9e-10 68.6 130 33.8
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 6.7e-10 67.8 129 35.7
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 8.8e-10 67.4 125 38.4
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-09 67.0 127 36.2
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-09 66.6 127 36.2
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 3.3e-09 65.5 112 42.9
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 4.4e-09 65.1 119 34.5
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 4.4e-09 65.1 115 32.2
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 4.4e-09 65.1 120 38.3
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 5.7e-09 64.7 129 34.9
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 1.3e-08 63.5 127 40.9
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 1.3e-08 63.5 122 39.3
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.7e-08 63.2 48 56.2
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 2.2e-08 62.8 100 39.0
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 2.2e-08 62.8 137 35.0
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 2.2e-08 62.8 120 38.3
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.8e-08 62.4 121 36.4
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 4.8e-08 61.6 122 36.9
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 4.8e-08 61.6 123 37.4
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 4.8e-08 61.6 117 36.8
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 6.3e-08 61.2 122 36.9
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.4e-07 60.1 37 67.6
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.4e-07 60.1 112 35.7
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 1.8e-07 59.7 114 37.7
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-07 58.9 37 64.9
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.1e-07 58.9 114 36.8
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 3.1e-07 58.9 112 38.4
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.1e-07 58.9 115 37.4
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.1e-07 58.5 114 38.6
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 5.3e-07 58.2 112 36.6
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 9.1e-07 57.4 110 39.1
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 9.1e-07 57.4 113 38.1
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 9.1e-07 57.4 113 38.1
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 9.1e-07 57.4 113 36.3
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 9.1e-07 57.4 81 40.7
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 1.5e-06 56.6 102 39.2
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-06 56.6 116 34.5
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 1.5e-06 56.6 116 34.5
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.5e-06 56.6 109 38.5
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 2.6e-06 55.8 48 47.9
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 3.4e-06 55.5 46 47.8
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 3.4e-06 55.5 116 34.5
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 3.4e-06 55.5 107 30.8
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 4.5e-06 55.1 112 37.5
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 5.9e-06 54.7 109 34.9


User provided reference genes

Program Settings