Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p21610 Brassica napus HOM05D003331 ORTHO05D003264 1.4e-128 463.0 244 100.0
BraA08t34108Z Brassica rapa HOM05D003331 ORTHO05D003264 1.4e-128 463.0 244 100.0
BcaC01g00527 Brassica carinata HOM05D003331 ORTHO05D003264 7.1e-112 407.5 264 86.7
C03p80970 Brassica napus HOM05D003331 ORTHO05D003264 2.3e-110 402.5 264 86.0
BolC3t20356H Brassica oleracea HOM05D003331 ORTHO05D003264 1.1e-107 393.7 255 86.7
Sp7g33680 Schrenkiella parvula HOM05D003331 ORTHO05D003264 7.1e-96 354.4 282 73.8
Thhalv10025822m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 4.3e-93 345.1 308 69.2
Carub.0007s0433 Capsella rubella HOM05D003331 ORTHO05D003264 4.2e-88 328.6 280 71.4
C01p03140 Brassica napus HOM05D003331 ORTHO05D003264 2.1e-87 326.2 279 71.0
BcaNung00784 Brassica carinata HOM05D003331 ORTHO05D003264 3.5e-87 325.5 279 71.0
C07p61400 Brassica napus HOM05D003331 ORTHO05D003264 3.1e-83 312.4 287 67.9
BolC7t46566H Brassica oleracea HOM05D003331 ORTHO05D003264 2.6e-82 309.3 287 67.6
CARHR244290 Cardamine hirsuta HOM05D003331 ORTHO05D003264 2.5e-80 302.8 287 64.5
A03p63930 Brassica napus HOM05D003331 ORTHO05D003264 1.1e-77 293.9 271 69.0
BraA03t15462Z Brassica rapa HOM05D003331 ORTHO05D003264 1.1e-77 293.9 271 69.0
BcaNung04885 Brassica carinata HOM05D003331 ORTHO05D003264 3.3e-77 292.4 237 71.3
Aa31LG6G12860 Aethionema arabicum HOM05D003331 ORTHO05D003264 9.7e-77 290.8 298 62.8
BolC1t00299H Brassica oleracea HOM05D003331 ORTHO05D003264 2.0e-74 283.1 276 64.5
AT4G35900 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 1.4e-70 270.4 238 67.2
A01p02810 Brassica napus HOM05D003331 ORTHO05D003264 1.3e-65 253.8 227 69.2
BraA01t00264Z Brassica rapa HOM05D003331 ORTHO05D003264 1.3e-65 253.8 227 69.2
BcaNung05055 Brassica carinata HOM05D003331 ORTHO05D003264 1.1e-56 224.2 229 65.1
Carub.0003s3191 Capsella rubella HOM05D003331 ORTHO05D003264 1.5e-45 187.2 266 52.3
THA.LOC104819740 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 1.4e-43 180.6 259 53.3
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 8.0e-39 164.9 251 51.4
AL3G50780 Arabidopsis lyrata HOM05D003331 ORTHO05D003264 2.3e-38 163.3 227 52.9
Duzib147G1072 Durio zibethinus HOM05D003331 ORTHO05D003264 4.4e-37 159.1 259 50.2
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 9.8e-37 157.9 275 47.6
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 2.2e-36 156.8 217 52.1
THA.LOC104807508 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 2.8e-36 156.4 231 50.2
QL06p051331 Quercus lobata HOM05D003331 ORTHO05D003264 1.4e-35 154.1 278 46.8
Sp3g31180 Schrenkiella parvula HOM05D003331 ORTHO05D003264 5.4e-35 152.1 259 47.9
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 4.5e-34 149.1 220 50.0
AT2G17770 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 7.3e-32 141.7 212 50.9
Duzib264G0309 Durio zibethinus HOM05D003331 ORTHO05D003264 3.6e-31 139.4 261 47.5
Sabra05G0089800 Salix brachista HOM05D003331 ORTHO05D003264 3.6e-31 139.4 325 40.9
Gorai.007G191800 Gossypium raimondii HOM05D003331 ORTHO05D003264 6.1e-31 138.7 227 46.3
BraA09t36802Z Brassica rapa HOM05D003331 ORTHO05D003264 4.0e-30 136.0 267 44.6
A09p11560 Brassica napus HOM05D003331 ORTHO05D003264 5.2e-30 135.6 226 49.6
Thhalv10023128m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 6.8e-30 135.2 254 46.1
PGR102G0808 Punica granatum HOM05D003331 ORTHO05D003264 8.9e-30 134.8 238 47.1
BraA09t36795Z Brassica rapa HOM05D003331 ORTHO05D003264 9.8e-29 131.3 228 47.4
Manes.02G109000 Manihot esculenta HOM05D003331 ORTHO05D003264 9.8e-29 131.3 206 50.0
BcaB07g31705 Brassica carinata HOM05D003331 ORTHO05D003264 1.3e-28 131.0 225 47.1
BcaB03g16550 Brassica carinata HOM05D003331 ORTHO05D003264 3.7e-28 129.4 236 44.9
BcaC04g22944 Brassica carinata HOM05D003331 ORTHO05D003264 3.7e-28 129.4 226 46.5
Haze_03715 Corylus avellana HOM05D003331 ORTHO05D003264 4.9e-28 129.0 214 48.1
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 6.4e-28 128.6 248 43.5
CARHR108160 Cardamine hirsuta HOM05D003331 ORTHO05D003264 1.1e-27 127.9 202 47.5
BolC9t54251H Brassica oleracea HOM05D003331 ORTHO05D003264 7.0e-27 125.2 238 45.4
A07p03180 Brassica napus HOM05D003331 ORTHO05D003264 9.2e-27 124.8 274 42.3
BraA07t28114Z Brassica rapa HOM05D003331 ORTHO05D003264 9.2e-27 124.8 274 42.3
C09p13610 Brassica napus HOM05D003331 ORTHO05D003264 1.2e-26 124.4 228 46.1
Cfa007016 Carpinus fangiana HOM05D003331 ORTHO05D003264 1.6e-26 124.0 182 52.2
Gorai.003G007000 Gossypium raimondii HOM05D003331 ORTHO05D003264 4.6e-26 122.5 248 42.7
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 4.6e-26 122.5 233 45.1
CiPaw.08G127600 Carya illinoinensis HOM05D003331 ORTHO05D003264 1.0e-25 121.3 177 50.3
Gohir.D03G006700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.3e-25 120.9 248 42.7
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 2.3e-25 120.2 226 45.6
Thecc.08G048800 Theobroma cacao HOM05D003331 ORTHO05D003264 2.3e-25 120.2 226 45.1
Gohir.A11G172900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.5e-24 116.7 201 45.3
Prupe.7G173300 Prunus persica HOM05D003331 ORTHO05D003264 9.5e-24 114.8 278 39.9
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 2.1e-23 113.6 218 42.7
Gohir.D11G179900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.6e-23 112.8 198 44.9
TWI09G0177 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 4.7e-23 112.5 256 43.4
Actinidia02367 Actinidia chinensis HOM05D003331 ORTHO05D003264 1.1e-22 111.3 231 42.0
CANSAT01G0941 Cannabis sativa HOM05D003331 ORTHO05D003264 2.3e-22 110.2 239 41.0
Duzib093G0576 Durio zibethinus HOM05D003331 ORTHO05D003264 4.0e-22 109.4 232 41.4
Haze_22676 Corylus avellana HOM05D003331 ORTHO05D003264 1.2e-21 107.8 280 36.8
Sabra05G0188500 Salix brachista HOM05D003331 ORTHO05D003264 3.4e-21 106.3 297 38.4
TWI53G1588 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 1.3e-20 104.4 244 41.0
GSVIVG01006332001 Vitis vinifera HOM05D003331 ORTHO05D003264 1.3e-20 104.4 210 42.9
Hma1.2p1_0561F.1_g178920 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 2.9e-20 103.2 172 46.5
CAN.G890.4 Capsicum annuum HOM05D003331 ORTHO05D003264 3.7e-20 102.8 271 39.9
Dinv08561 Davidia involucrata HOM05D003331 ORTHO05D003264 6.4e-20 102.1 180 48.3
Oeu020389.1 Olea europaea HOM05D003331 ORTHO05D003264 6.4e-20 102.1 217 44.2
Gorai.009G192500 Gossypium raimondii HOM05D003331 ORTHO05D003264 8.3e-20 101.7 226 39.8
Hma1.2p1_0315F.1_g122420 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 8.3e-20 101.7 224 40.6
Sopen02g028310 Solanum pennellii HOM05D003331 ORTHO05D003264 8.3e-20 101.7 222 41.4
TAR625G0644 Trochodendron aralioides HOM05D003331 ORTHO05D003264 8.3e-20 101.7 216 42.1
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.1e-19 101.3 227 39.2
Gohir.D05G187300 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.1e-19 101.3 226 39.8
BcaC06g36320 Brassica carinata HOM05D003331 ORTHO05D003264 3.2e-19 99.8 211 42.7
C07p05420 Brassica napus HOM05D003331 ORTHO05D003264 3.2e-19 99.8 212 44.3
Solyc02g083520.2 Solanum lycopersicum HOM05D003331 ORTHO05D003264 4.1e-19 99.4 221 40.7
MD15G1240800 Malus domestica HOM05D003331 ORTHO05D003264 5.4e-19 99.0 258 39.9
BolC7t40942H Brassica oleracea HOM05D003331 ORTHO05D003264 1.2e-18 97.8 212 43.9
Lj2g0025662 Lotus japonicus HOM05D003331 ORTHO05D003264 2.1e-18 97.1 232 40.9
Cfa013989 Carpinus fangiana HOM05D003331 ORTHO05D003264 3.0e-17 93.2 193 43.5
Cpa.g.sc6.298 Carica papaya HOM05D003331 ORTHO05D003264 3.9e-17 92.8 224 39.7
FAN23G2926 Fragaria x ananassa HOM05D003331 ORTHO05D003264 3.9e-17 92.8 283 36.4
CiPaw.07G145300 Carya illinoinensis HOM05D003331 ORTHO05D003264 5.1e-17 92.4 262 39.7
MBI08_g06420_MAGBIO Magnolia biondii HOM05D003331 ORTHO05D003264 6.6e-17 92.0 225 40.9
Manes.05G144400 Manihot esculenta HOM05D003331 ORTHO05D003264 6.6e-17 92.0 226 39.4
Nn2g14480 Nelumbo nucifera HOM05D003331 ORTHO05D003264 6.6e-17 92.0 182 44.0
MD02G1125100 Malus domestica HOM05D003331 ORTHO05D003264 1.1e-16 91.3 282 36.2
Peaxi162Scf00328g00414 Petunia axillaris HOM05D003331 ORTHO05D003264 1.1e-16 91.3 256 36.3
QL02p012465 Quercus lobata HOM05D003331 ORTHO05D003264 1.5e-16 90.9 303 33.0
Lsat_1_v5_gn_4_145080 Lactuca sativa HOM05D003331 ORTHO05D003264 1.9e-16 90.5 244 38.1
CsaV3_3G000600 Cucumis sativus L. HOM05D003331 ORTHO05D003264 3.3e-16 89.7 224 38.4
FAN19G3075 Fragaria x ananassa HOM05D003331 ORTHO05D003264 7.3e-16 88.6 291 36.1
MELO3C013748.2 Cucumis melo HOM05D003331 ORTHO05D003264 9.5e-16 88.2 223 39.0
FAN26G3159 Fragaria x ananassa HOM05D003331 ORTHO05D003264 2.8e-15 86.7 282 35.1
Hund16511 Selenicereus undatus HOM05D003331 ORTHO05D003264 2.8e-15 86.7 257 38.9
FAN28G0558 Fragaria x ananassa HOM05D003331 ORTHO05D003264 4.7e-15 85.9 279 35.5
HanXRQChr15g0487141 Helianthus annuus HOM05D003331 ORTHO05D003264 4.7e-15 85.9 232 37.9
Lalb_Chr09g0321511 Lupinus albus HOM05D003331 ORTHO05D003264 6.2e-15 85.5 228 39.0
Dinv40128 Davidia involucrata HOM05D003331 ORTHO05D003264 8.1e-15 85.1 211 40.8
Eucgr.J02482 Eucalyptus grandis HOM05D003331 ORTHO05D003264 2.3e-14 83.6 173 41.0
Gohir.A01G109700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.3e-14 83.6 221 38.9
Gorai.002G122200 Gossypium raimondii HOM05D003331 ORTHO05D003264 2.3e-14 83.6 219 38.8
Glyma.01G163500 Glycine max HOM05D003331 ORTHO05D003264 3.1e-14 83.2 225 40.4
Cc07_g11170 Coffea canephora HOM05D003331 ORTHO05D003264 5.2e-14 82.4 243 37.4
TAR628G1529 Trochodendron aralioides HOM05D003331 ORTHO05D003264 5.2e-14 82.4 187 41.2
Manes.18G012121 Manihot esculenta HOM05D003331 ORTHO05D003264 6.8e-14 82.0 304 33.2
Aqoxy6G02126 Aquilegia oxysepala HOM05D003331 ORTHO05D003264 1.2e-13 81.3 191 41.4
CAN.G225.18 Capsicum annuum HOM05D000004 ORTHO05D000002 1.2e-13 81.3 175 42.9
Nitab4.5_0001789g0110 Nicotiana tabacum HOM05D003331 ORTHO05D003264 1.5e-13 80.9 261 34.9
Potri.002G018400 Populus trichocarpa HOM05D003331 ORTHO05D003264 1.5e-13 80.9 250 34.4
PSO541G2637 Papaver somniferum HOM05D003331 ORTHO05D003264 5.8e-13 79.0 315 34.0
PGSC0003DMG400023897 Solanum tuberosum HOM05D003331 ORTHO05D003264 7.5e-13 78.6 267 35.2
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 9.9e-13 78.2 154 41.6
RcHm_v2.0_Chr2g0098731 Rosa chinensis HOM05D003331 ORTHO05D003264 1.7e-12 77.4 203 39.9
HanXRQChr05g0133741 Helianthus annuus HOM05D003331 ORTHO05D003264 2.9e-12 76.6 229 36.7
Gorai.009G269300 Gossypium raimondii HOM05D003331 ORTHO05D003264 6.4e-12 75.5 236 36.4
PSO675G4415 Papaver somniferum HOM05D003331 ORTHO05D003264 1.1e-11 74.7 316 33.2
Actinidia17008 Actinidia chinensis HOM05D003331 ORTHO05D003264 1.9e-11 73.9 244 37.3
Glyma.02G045500 Glycine max HOM05D003331 ORTHO05D003264 2.4e-11 73.6 252 33.3
Rhsim08G0031400 Rhododendron simsii HOM05D003331 ORTHO05D003264 2.4e-11 73.6 202 40.1
Atru.chr13.244 Acer truncatum HOM05D003331 ORTHO05D003264 3.2e-11 73.2 218 38.1
ClCG10G000520 Citrullus lanatus HOM05D003331 ORTHO05D003264 4.1e-11 72.8 219 35.2
Medtr5g022780 Medicago truncatula HOM05D003331 ORTHO05D003264 7.1e-11 72.0 257 35.0
VMungo1215G2112 Vigna mungo HOM05D003331 ORTHO05D003264 9.2e-11 71.6 168 42.3
Sabra02G0014700 Salix brachista HOM05D003331 ORTHO05D003264 2.7e-10 70.1 260 31.9
Actinidia15450 Actinidia chinensis HOM05D003331 ORTHO05D003264 3.5e-10 69.7 88 52.3
Gohir.A05G256250 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.5e-10 69.7 217 35.0
Sc03g0003730 Simmondsia chinensis HOM05D003331 ORTHO05D003264 4.6e-10 69.3 212 36.3
Psat2g152560 Pisum sativum HOM05D003331 ORTHO05D003264 6.0e-10 68.9 282 33.0
FvH4_1g11270 Fragaria vesca HOM05D003331 ORTHO05D003264 1.3e-09 67.8 236 34.7
Nitab4.5_0002337g0180 Nicotiana tabacum HOM05D003331 ORTHO05D003264 1.7e-09 67.4 186 39.2
Sopen02g012950 Solanum pennellii HOM05D003331 ORTHO05D003264 1.7e-09 67.4 192 34.9
HPP92_022194 Vanilla planifolia HOM05D003331 ORTHO05D003264 1.7e-09 67.4 230 33.5
Ciclev10003845m.g Citrus clementina HOM05D003331 ORTHO05D003264 2.3e-09 67.0 183 40.4
HPP92_022184 Vanilla planifolia HOM05D003331 ORTHO05D003264 2.3e-09 67.0 230 33.5
PGSC0003DMG400003652 Solanum tuberosum HOM05D003331 ORTHO05D003264 3.0e-09 66.6 207 33.8
Oeu033812.1 Olea europaea HOM05D003331 ORTHO05D003264 5.1e-09 65.9 171 39.8
RcHm_v2.0_Chr6g0303481 Rosa chinensis HOM05D003331 ORTHO05D003264 6.6e-09 65.5 241 35.7
Gohir.D01G096500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.5e-08 64.3 180 38.9
Cpa.g.sc26.287 Carica papaya HOM05D003331 ORTHO05D003264 3.3e-08 63.2 240 33.3
Nitab4.5_0000188g0190 Nicotiana tabacum HOM05D003331 ORTHO05D003264 3.3e-08 63.2 176 37.5
Oeu012566.1 Olea europaea HOM05D003331 ORTHO05D003264 3.3e-08 63.2 222 35.1
Atru.chr3.881 Acer truncatum HOM05D003331 ORTHO05D003264 4.3e-08 62.8 174 38.5
FAN20G2542 Fragaria x ananassa HOM05D003331 ORTHO05D003264 4.3e-08 62.8 235 34.0
Gohir.D05G258000 Gossypium hirsutum HOM05D003331 ORTHO05D003264 5.6e-08 62.4 190 36.8
SGA_v2.0_scaffold137G35070 Striga asiatica HOM05D003331 ORTHO05D003264 7.3e-08 62.0 88 52.3
ECA232G3395 Erigeron canadensis HOM05D003331 ORTHO05D003264 9.5e-08 61.6 229 34.9
Peaxi162Scf00439g00042 Petunia axillaris HOM05D003331 ORTHO05D003264 9.5e-08 61.6 172 37.8
CiPaw.08G068400 Carya illinoinensis HOM05D003331 ORTHO05D003264 2.8e-07 60.1 229 33.2
Phvul.002G105700 Phaseolus vulgaris HOM05D003331 ORTHO05D003264 2.8e-07 60.1 169 37.3
Sc02g0008740 Simmondsia chinensis HOM05D003331 ORTHO05D003264 3.6e-07 59.7 168 36.3
Glyma.11G080000 Glycine max HOM05D003331 ORTHO05D003264 6.2e-07 58.9 75 58.7
AUR62018275 Chenopodium quinoa HOM05D003331 ORTHO05D003264 8.1e-07 58.5 130 40.0
Lalb_Chr16g0377411 Lupinus albus HOM05D003331 ORTHO05D003264 8.1e-07 58.5 235 32.8
PGR083G0975 Punica granatum HOM05D003331 ORTHO05D003264 1.4e-06 57.8 235 32.3
EL10Ac1g02139 Beta vulgaris HOM05D003331 ORTHO05D003264 2.4e-06 57.0 120 41.7
PGR031G1921 Punica granatum HOM05D003331 ORTHO05D003264 3.1e-06 56.6 254 33.1
FvH4_2g38080 Fragaria vesca HOM05D003331 ORTHO05D003264 6.8e-06 55.5 186 34.9
Solyc02g061990.3 Solanum lycopersicum HOM05D003331 ORTHO05D003264 8.9e-06 55.1 192 32.3


User provided reference genes

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