Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p20900 Brassica napus HOM05D022834 ORTHO05D000724 5.7e-74 280.8 139 100.0
BraA08t34042Z Brassica rapa HOM05D022834 ORTHO05D000724 2.4e-64 248.8 124 100.0
A09p56750 Brassica napus HOM05D022834 ORTHO05D000724 3.5e-55 218.4 111 98.2
BolC7t44463H Brassica oleracea HOM05D000988 ORTHO05D000724 5.0e-46 188.0 130 78.5
C07p39440 Brassica napus HOM05D000988 ORTHO05D000724 3.3e-45 185.3 116 86.2
BcaC06g30755 Brassica carinata HOM05D000988 ORTHO05D000724 7.3e-45 184.1 116 85.3
BraA06t26803Z Brassica rapa HOM05D000988 ORTHO05D000724 9.5e-45 183.7 130 75.4
A06p38880 Brassica napus HOM05D000988 ORTHO05D000724 1.6e-44 183.0 116 83.6
C08p07750 Brassica napus HOM05D022834 ORTHO05D041206 7.5e-42 174.1 128 75.0
BolC8t47623H Brassica oleracea HOM05D022834 ORTHO05D041206 7.5e-42 174.1 128 75.0
Thhalv10004871m.g Eutrema salsugineum HOM05D000988 ORTHO05D000724 1.5e-34 149.8 142 64.8
Sp2g19210 Schrenkiella parvula HOM05D000988 ORTHO05D000724 1.4e-32 143.3 132 67.4
Carub.0008s0855 Capsella rubella HOM05D000988 ORTHO05D000724 7.6e-26 120.9 114 65.8
AL8G21990 Arabidopsis lyrata HOM05D000988 ORTHO05D000724 9.9e-26 120.6 114 65.8
BcaB04g19585 Brassica carinata HOM05D000988 ORTHO05D000724 3.7e-25 118.6 112 67.0
CARHR182920 Cardamine hirsuta HOM05D000988 ORTHO05D000724 4.9e-25 118.2 118 62.7
AT5G48820 Arabidopsis thaliana HOM05D000988 ORTHO05D000724 7.1e-24 114.4 115 64.3
A09p04640 Brassica napus HOM05D000988 ORTHO05D000724 6.8e-19 97.8 110 60.9
BraA09t36100Z Brassica rapa HOM05D000988 ORTHO05D000724 6.8e-19 97.8 110 60.9
THA.LOC104818958 Tarenaya hassleriana HOM05D000988 ORTHO05D000724 3.4e-18 95.5 139 48.2
BcaC04g23761 Brassica carinata HOM05D000988 ORTHO05D000724 3.8e-17 92.0 109 59.6
C09p04950 Brassica napus HOM05D000988 ORTHO05D000724 3.8e-17 92.0 109 59.6
BolC9t53423H Brassica oleracea HOM05D000988 ORTHO05D000724 3.8e-17 92.0 109 59.6
THA.LOC104822503 Tarenaya hassleriana HOM05D000988 ORTHO05D000724 7.8e-15 84.3 145 43.4
Aa31LG5G17660 Aethionema arabicum HOM05D000988 ORTHO05D000724 8.7e-14 80.9 123 49.6
Cpa.g.sc8.159 Carica papaya HOM05D000988 ORTHO05D000724 2.1e-12 76.3 112 46.4
Nitab4.5_0000045g0150 Nicotiana tabacum HOM05D000988 ORTHO05D000724 9.0e-11 70.9 128 46.1
Nitab4.5_0003312g0070 Nicotiana tabacum HOM05D000988 ORTHO05D000724 1.2e-10 70.5 127 43.3
GSVIVG01028640001 Vitis vinifera HOM05D000988 ORTHO05D000724 3.4e-10 68.9 92 53.3
Sed0008023 Sechium edule HOM05D000988 ORTHO05D000724 2.2e-09 66.2 83 54.2
Cc01_g17060 Coffea canephora HOM05D000988 ORTHO05D000724 2.9e-09 65.9 89 55.1
Manes.12G045650 Manihot esculenta HOM05D000988 ORTHO05D000724 4.9e-09 65.1 110 46.4
Aa31LG9G4710 Aethionema arabicum HOM05D000988 ORTHO05D000724 1.1e-08 63.9 107 42.1
Sed0019351 Sechium edule HOM05D000988 ORTHO05D000724 1.1e-08 63.9 97 48.5
TAR365G0156 Trochodendron aralioides HOM05D000988 ORTHO05D000724 1.4e-08 63.5 125 40.0
TAR636G2975 Trochodendron aralioides HOM05D000988 ORTHO05D000724 1.4e-08 63.5 118 44.9
Glyma.20G198800 Glycine max HOM05D000988 ORTHO05D000724 3.2e-08 62.4 92 46.7
Oeu016719.1 Olea europaea HOM05D000988 ORTHO05D000724 3.2e-08 62.4 100 49.0
Thecc.01G226300 Theobroma cacao HOM05D000988 ORTHO05D000724 5.4e-08 61.6 111 42.3
Cc01_g17050 Coffea canephora HOM05D000988 ORTHO05D000724 9.3e-08 60.8 105 51.4
MELO3C026998.2 Cucumis melo HOM05D000988 ORTHO05D000724 9.3e-08 60.8 108 41.7
CsaV3_3G029910 Cucumis sativus L. HOM05D000988 ORTHO05D000724 9.3e-08 60.8 119 39.5
Nn3g19961 Nelumbo nucifera HOM05D000988 ORTHO05D000724 9.3e-08 60.8 104 42.3
Potri.002G242100 Populus trichocarpa HOM05D000988 ORTHO05D000724 9.3e-08 60.8 77 58.4
TWI18G0513 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 9.3e-08 60.8 66 65.2
Peaxi162Scf00107g01914 Petunia axillaris HOM05D000988 ORTHO05D000724 1.2e-07 60.5 107 46.7
Nn1g07848 Nelumbo nucifera HOM05D000988 ORTHO05D000724 1.6e-07 60.1 85 47.1
Dinv19206 Davidia involucrata HOM05D000988 ORTHO05D000724 2.7e-07 59.3 128 39.1
Sc13g0000110 Simmondsia chinensis HOM05D000988 ORTHO05D000724 2.7e-07 59.3 81 50.6
CSS0020824 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 3.5e-07 58.9 117 44.4
Dinv29587 Davidia involucrata HOM05D000988 ORTHO05D000724 3.5e-07 58.9 80 48.8
MD04G1005800 Malus domestica HOM05D000988 ORTHO05D000724 3.5e-07 58.9 97 48.5
Sabra02G0184300 Salix brachista HOM05D000988 ORTHO05D000724 3.5e-07 58.9 126 42.9
Duzib138G0777 Durio zibethinus HOM05D000988 ORTHO05D000724 4.6e-07 58.5 95 47.4
Hma1.2p1_0226F.1_g095740 Hydrangea macrophylla HOM05D000988 ORTHO05D000724 4.6e-07 58.5 117 41.0
Solyc12g098310.2 Solanum lycopersicum HOM05D000988 ORTHO05D000724 4.6e-07 58.5 108 45.4
Sopen00g011190 Solanum pennellii HOM05D000988 ORTHO05D000724 4.6e-07 58.5 108 45.4
Sopen12g033090 Solanum pennellii HOM05D000988 ORTHO05D000724 4.6e-07 58.5 108 45.4
PGSC0003DMG400007708 Solanum tuberosum HOM05D000988 ORTHO05D000724 4.6e-07 58.5 108 45.4
COL.COLO4_10276 Corchorus olitorius HOM05D000988 ORTHO05D000724 6.0e-07 58.2 127 37.8
Dinv38246 Davidia involucrata HOM05D000988 ORTHO05D000724 6.0e-07 58.2 105 46.7
ClCG07G001920 Citrullus lanatus HOM05D000988 ORTHO05D000724 7.9e-07 57.8 74 51.4
Lj2A1131T40 Lonicera japonica HOM05D000988 ORTHO05D000724 1.0e-06 57.4 116 40.5
RcHm_v2.0_Chr6g0284901 Rosa chinensis HOM05D000988 ORTHO05D000724 1.0e-06 57.4 85 47.1
CSS0039793 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 1.3e-06 57.0 75 52.0
Ciclev10005793m.g Citrus clementina HOM05D000988 ORTHO05D000724 1.3e-06 57.0 71 54.9
Dinv04651 Davidia involucrata HOM05D000988 ORTHO05D000724 1.3e-06 57.0 78 50.0
HanXRQChr04g0110791 Helianthus annuus HOM05D000988 ORTHO05D000724 1.3e-06 57.0 100 40.0
Peaxi162Scf00938g00430 Petunia axillaris HOM05D000988 ORTHO05D000724 1.3e-06 57.0 112 41.1
PGR044G2689 Punica granatum HOM05D000988 ORTHO05D000724 1.7e-06 56.6 97 47.4
THA.LOC104821646 Tarenaya hassleriana HOM05D000988 ORTHO05D000724 1.7e-06 56.6 128 40.6
Oeu004061.1 Olea europaea HOM05D000988 ORTHO05D000724 2.3e-06 56.2 107 42.1
Phvul.L002172 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 2.3e-06 56.2 92 44.6
TWI36G1195 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 2.3e-06 56.2 65 63.1
VMungo0720G1882 Vigna mungo HOM05D000988 ORTHO05D000724 2.3e-06 56.2 92 44.6
Gohir.D05G316900 Gossypium hirsutum HOM05D000988 ORTHO05D000724 3.0e-06 55.8 91 44.0
Gorai.009G339200 Gossypium raimondii HOM05D000988 ORTHO05D000724 3.9e-06 55.5 91 44.0
Oeu006727.2 Olea europaea HOM05D000988 ORTHO05D000724 3.9e-06 55.5 94 43.6
CSS0048702 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 5.1e-06 55.1 114 42.1
CDE08G0445 Ceratophyllum demersum HOM05D000988 ORTHO05D000724 5.1e-06 55.1 109 43.1
FvH4_2g19080 Fragaria vesca HOM05D000988 ORTHO05D000724 5.1e-06 55.1 108 43.5
Lalb_Chr21g0312561 Lupinus albus HOM05D000988 ORTHO05D000724 5.1e-06 55.1 107 43.9
Medtr7g057920 Medicago truncatula HOM05D000988 ORTHO05D000724 5.1e-06 55.1 90 48.9
ECA236G4283 Erigeron canadensis HOM05D000988 ORTHO05D000724 6.6e-06 54.7 104 43.3
SGA_v2.0_scaffold8G04637 Striga asiatica HOM05D000988 ORTHO05D000724 6.6e-06 54.7 69 52.2
Ca_07515_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 8.7e-06 54.3 71 52.1
FAN24G2948 Fragaria x ananassa HOM05D000988 ORTHO05D000724 8.7e-06 54.3 108 43.5
HanXRQChr00c0028g0571151 Helianthus annuus HOM05D000988 ORTHO05D000724 8.7e-06 54.3 115 42.6


User provided reference genes

Program Settings