Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 3.9e-111 404.8 207 100.0
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 1.5e-99 366.3 208 94.7
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 1.8e-87 326.2 209 87.1
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 1.8e-87 326.2 209 87.1
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 3.9e-87 325.1 209 87.1
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 1.5e-86 323.2 208 85.1
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 3.2e-81 305.4 209 81.3
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 2.8e-77 292.4 208 77.4
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 4.1e-76 288.5 209 76.6
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 1.6e-72 276.6 210 73.8
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 1.0e-71 273.9 205 76.6
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 6.3e-69 264.6 206 70.4
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 3.8e-66 255.4 205 71.7
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 2.5e-65 252.7 210 68.6
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.2e-64 250.4 205 67.3
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 1.2e-64 250.4 205 70.2
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 2.1e-64 249.6 205 70.2
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 3.6e-64 248.8 205 69.8
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 1.2e-62 243.8 208 66.8
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 4.4e-62 241.9 208 65.4
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 4.8e-61 238.4 206 70.4
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 4.8e-61 238.4 206 70.4
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 7.7e-59 231.1 203 69.0
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 7.7e-59 231.1 203 69.0
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 1.2e-56 223.8 202 66.8
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 3.0e-55 219.2 183 69.9
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 6.5e-50 201.4 201 61.7
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 1.0e-42 177.6 210 51.0
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 1.2e-38 164.1 228 48.7
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 1.2e-38 164.1 228 48.7
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 4.1e-36 155.6 228 43.4
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 5.4e-36 155.2 213 46.9
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.6e-35 153.7 227 44.5
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.0e-35 153.3 211 46.4
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 2.7e-35 152.9 226 46.9
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 4.6e-35 152.1 232 46.6
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 7.8e-35 151.4 193 45.1
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 1.3e-34 150.6 218 45.9
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.3e-34 150.6 211 44.5
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 1.3e-34 150.6 231 46.3
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 1.7e-34 150.2 209 48.8
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 2.3e-34 149.8 217 45.6
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 6.6e-34 148.3 224 42.9
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 6.6e-34 148.3 214 47.7
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.1e-33 147.5 213 42.7
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 1.1e-33 147.5 250 40.0
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.9e-33 146.7 218 43.6
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 2.5e-33 146.4 227 44.9
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.5e-33 146.4 157 52.2
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 7.3e-33 144.8 234 41.0
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 9.5e-33 144.4 219 43.4
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.2e-32 144.1 196 43.4
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 1.2e-32 144.1 226 43.8
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 1.2e-32 144.1 226 41.2
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.6e-32 143.7 248 39.1
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 1.6e-32 143.7 213 45.1
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 8.0e-32 141.4 205 43.4
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 1.1e-31 141.0 221 41.2
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 3.1e-31 139.4 202 45.5
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 4.0e-31 139.0 224 44.6
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 2.6e-30 136.3 231 42.0
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 5.8e-30 135.2 209 43.1
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 7.5e-30 134.8 212 42.9
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 9.8e-30 134.4 217 42.4
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 1.7e-29 133.7 226 46.0
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 2.2e-29 133.3 200 47.0
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 2.9e-29 132.9 218 41.3
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 4.9e-29 132.1 175 49.7
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 4.9e-29 132.1 225 42.2
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 6.4e-29 131.7 200 46.0
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 6.4e-29 131.7 222 43.2
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 8.3e-29 131.3 192 44.8
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 8.3e-29 131.3 222 40.1
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.4e-28 130.6 203 41.9
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 1.4e-28 130.6 180 42.2
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.2e-28 129.4 220 43.6
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 4.1e-28 129.0 222 42.3
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 5.4e-28 128.6 181 44.8
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 7.0e-28 128.3 252 36.9
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 9.2e-28 127.9 232 39.7
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 1.6e-27 127.1 204 42.6
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 2.1e-27 126.7 170 45.9
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 2.1e-27 126.7 192 42.7
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 4.6e-27 125.6 173 43.9
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 4.6e-27 125.6 222 41.9
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 7.8e-27 124.8 177 44.1
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 7.8e-27 124.8 189 43.4
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 7.8e-27 124.8 217 40.1
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 7.8e-27 124.8 165 43.6
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.3e-26 124.0 104 60.6
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.3e-26 124.0 201 46.8
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 1.7e-26 123.6 231 38.1
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.3e-26 123.2 207 41.5
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 2.3e-26 123.2 180 42.8
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 3.9e-26 122.5 89 62.9
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 5.1e-26 122.1 221 40.3
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 5.1e-26 122.1 175 44.0
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 6.6e-26 121.7 158 44.3
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 8.6e-26 121.3 224 38.4
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 1.1e-25 120.9 194 40.7
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 1.1e-25 120.9 203 41.9
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 2.5e-25 119.8 220 40.9
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 2.5e-25 119.8 216 37.5
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 3.3e-25 119.4 216 40.7
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 4.3e-25 119.0 225 40.0
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 7.3e-25 118.2 130 51.5
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 7.3e-25 118.2 218 37.6
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 9.5e-25 117.9 113 65.5
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 9.5e-25 117.9 219 36.5
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.6e-24 117.1 195 41.5
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.6e-24 115.9 99 60.6
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.6e-24 115.9 156 45.5
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 4.7e-24 115.5 203 39.4
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 8.1e-24 114.8 82 65.9
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 1.1e-23 114.4 172 42.4
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 1.4e-23 114.0 220 39.1
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 2.3e-23 113.2 207 38.2
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 4.0e-23 112.5 104 57.7
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 6.8e-23 111.7 133 47.4
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.2e-22 110.9 224 37.5
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.5e-22 110.5 212 37.7
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 2.0e-22 110.2 199 41.2
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.6e-22 109.8 224 38.4
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 2.6e-22 109.8 198 38.4
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 3.4e-22 109.4 231 36.4
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 7.5e-22 108.2 75 64.0
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 7.5e-22 108.2 192 40.1
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 1.3e-21 107.5 205 38.5
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 1.7e-21 107.1 100 57.0
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 4.9e-21 105.5 99 66.7
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 1.9e-20 103.6 93 55.9
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 1.9e-20 103.6 84 59.5
BolC3t18785H Brassica oleracea HOM05D004801 ORTHO05D004735 5.4e-20 102.1 99 65.7
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.2e-19 100.9 99 65.7
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 1.2e-19 100.9 236 36.0
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 1.6e-19 100.5 71 64.8
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 2.1e-19 100.1 124 46.0
BcaC03g17563 Brassica carinata HOM05D000889 ORTHO05D027509 1.7e-18 97.1 83 72.3
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 3.9e-18 95.9 202 30.7
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 5.1e-18 95.5 186 37.6
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 8.6e-18 94.7 75 58.7
BolC2t11588H Brassica oleracea HOM05D004801 ORTHO05D005747 3.3e-17 92.8 87 65.5
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 1.6e-16 90.5 112 42.9
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 4.7e-16 89.0 105 53.3
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.4e-14 82.8 191 39.3
A01p19730 Brassica napus HOM05D004801 ORTHO05D005747 2.9e-13 79.7 92 60.9
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.9e-13 79.7 108 41.7
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 4.9e-13 79.0 167 37.1
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.4e-12 76.6 104 41.3
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 3.2e-12 76.3 168 33.9
BolC7t44010H Brassica oleracea HOM05D000067 ORTHO05D000280 1.9e-09 67.0 48 72.9
BcaC02g09253 Brassica carinata HOM05D035837 ORTHO05D032574 1.2e-08 64.3 82 57.3
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 2.0e-06 57.0 159 28.9
SalBow1G0370 Salvia bowleyana HOM05D004801 ORTHO05D005747 7.6e-06 55.1 158 33.5


User provided reference genes

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