Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 4.7e-74 281.2 151 100.0
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 4.7e-74 281.2 151 100.0
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 5.3e-65 251.1 151 92.1
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 2.6e-64 248.8 150 92.7
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 3.4e-64 248.4 150 92.0
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 6.4e-63 244.2 151 90.1
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 8.4e-63 243.8 151 89.4
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 8.4e-63 243.8 151 89.4
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 1.1e-62 243.4 150 90.0
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 1.1e-62 243.4 150 90.0
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 2.4e-62 242.3 150 89.3
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 2.4e-62 242.3 150 89.3
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 9.3e-62 240.4 151 88.1
AT4G28340 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 2.8e-58 228.8 150 85.3
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 8.1e-58 227.3 147 86.4
BcaC07g38325 Brassica carinata HOM05D003772 ORTHO05D004509 3.5e-53 211.8 150 78.7
C08p10800 Brassica napus HOM05D003772 ORTHO05D004509 3.5e-53 211.8 150 78.7
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 6.0e-53 211.1 147 78.2
BolC8t48755H Brassica oleracea HOM05D003772 ORTHO05D004509 5.3e-49 198.0 151 76.8
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 3.0e-44 182.2 143 67.8
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 5.1e-44 181.4 139 68.3
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 9.6e-43 177.2 149 63.8
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 1.3e-42 176.8 140 67.9
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 6.3e-42 174.5 139 66.9
BcaB03g12567 Brassica carinata HOM05D003772 ORTHO05D004509 3.1e-41 172.2 150 72.0
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 3.1e-41 172.2 152 61.2
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 4.1e-41 171.8 138 65.9
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 4.1e-41 171.8 149 62.4
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 5.3e-41 171.4 157 59.2
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 6.9e-41 171.0 144 64.6
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 9.0e-41 170.6 140 63.6
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 9.0e-41 170.6 147 61.9
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.5e-40 169.9 144 63.2
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 1.5e-40 169.9 144 63.2
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 1.5e-40 169.9 139 63.3
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 2.0e-40 169.5 153 60.1
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 3.4e-40 168.7 144 62.5
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 3.4e-40 168.7 147 61.2
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 7.6e-40 167.5 141 63.8
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 7.6e-40 167.5 148 61.5
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 7.6e-40 167.5 147 61.9
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 7.6e-40 167.5 147 61.9
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 7.6e-40 167.5 147 61.9
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 7.6e-40 167.5 149 61.1
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.0e-39 167.2 147 61.9
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 1.0e-39 167.2 142 62.7
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 1.0e-39 167.2 139 62.6
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 1.3e-39 166.8 149 61.1
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 1.3e-39 166.8 149 61.1
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 1.3e-39 166.8 138 63.8
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 1.3e-39 166.8 143 60.8
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 1.3e-39 166.8 142 62.7
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 1.3e-39 166.8 149 59.7
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 1.7e-39 166.4 142 64.1
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 1.7e-39 166.4 142 64.1
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 1.7e-39 166.4 142 64.1
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 1.7e-39 166.4 149 59.7
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.7e-39 166.4 141 63.8
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 2.2e-39 166.0 141 63.1
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 2.2e-39 166.0 148 60.1
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 2.2e-39 166.0 141 63.1
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 2.2e-39 166.0 142 64.1
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 2.2e-39 166.0 142 64.1
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 2.2e-39 166.0 143 62.2
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 2.2e-39 166.0 141 63.8
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 2.9e-39 165.6 149 59.7
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 3.8e-39 165.2 143 62.9
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 3.8e-39 165.2 143 62.9
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 3.8e-39 165.2 138 62.3
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 5.0e-39 164.9 141 62.4
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 5.0e-39 164.9 140 60.0
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 5.0e-39 164.9 139 61.9
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 8.5e-39 164.1 141 59.6
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 1.1e-38 163.7 142 59.9
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 1.1e-38 163.7 142 62.0
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 1.9e-38 162.9 141 61.0
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 1.9e-38 162.9 142 62.0
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 1.9e-38 162.9 142 62.0
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 1.9e-38 162.9 142 62.0
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 2.5e-38 162.5 139 62.6
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 5.5e-38 161.4 148 58.8
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 7.2e-38 161.0 142 61.3
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 7.2e-38 161.0 145 59.3
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 7.2e-38 161.0 147 59.2
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 7.2e-38 161.0 147 59.2
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 1.2e-37 160.2 140 60.0
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 1.6e-37 159.8 144 60.4
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.1e-37 159.5 144 59.0
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 2.7e-37 159.1 133 61.7
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 3.6e-37 158.7 156 55.8
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 6.1e-37 157.9 136 61.8
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.0e-36 157.1 140 57.9
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 2.3e-36 156.0 135 60.7
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 2.3e-36 156.0 136 64.0
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 3.9e-36 155.2 139 61.2
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 3.9e-36 155.2 139 59.7
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 5.1e-36 154.8 149 59.1
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 5.1e-36 154.8 130 63.8
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 6.7e-36 154.5 142 58.5
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 1.1e-35 153.7 143 58.7
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 1.1e-35 153.7 136 58.8
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 1.5e-35 153.3 138 59.4
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 2.5e-35 152.5 137 59.9
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 4.3e-35 151.8 140 59.3
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 4.3e-35 151.8 140 59.3
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 4.3e-35 151.8 142 58.5
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 5.7e-35 151.4 144 57.6
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 7.4e-35 151.0 135 58.5
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 9.7e-35 150.6 137 59.1
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 1.6e-34 149.8 143 56.6
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 1.6e-34 149.8 141 56.7
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 2.2e-34 149.4 143 56.6
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 2.8e-34 149.1 134 59.7
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 6.3e-34 147.9 122 66.4
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 6.3e-34 147.9 135 60.7
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 1.1e-33 147.1 141 58.2
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.4e-33 146.7 133 58.6
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 1.4e-33 146.7 139 56.8
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 1.8e-33 146.4 135 58.5
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 4.1e-33 145.2 141 56.0
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 1.5e-32 143.3 139 56.1
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 7.7e-32 141.0 147 53.7
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 2.2e-31 139.4 141 52.5
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 3.8e-31 138.7 140 55.7
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 3.8e-31 138.7 152 52.6
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 3.8e-31 138.7 123 59.3
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 3.2e-30 135.6 135 56.3
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 5.5e-30 134.8 144 52.8
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 9.4e-30 134.0 130 53.8
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 1.2e-29 133.7 146 52.1
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 2.1e-29 132.9 130 53.8
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 1.0e-28 130.6 135 54.1
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.3e-28 129.4 127 56.7
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 1.1e-27 127.1 142 53.5
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 4.4e-27 125.2 137 53.3
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 7.4e-27 124.4 137 55.5
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.3e-26 123.6 124 57.3
Lalb_Chr22g0356581 Lupinus albus HOM05D003772 ORTHO05D004509 1.3e-26 123.6 140 50.0
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.4e-25 120.2 137 52.6
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 2.4e-25 119.4 138 50.0
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 4.1e-25 118.6 101 63.4
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 2.6e-24 115.9 136 53.7
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 1.0e-23 114.0 137 50.4
Eucgr.A01824 Eucalyptus grandis HOM05D003772 ORTHO05D004509 2.2e-23 112.8 94 66.0
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 2.2e-23 112.8 89 65.2
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 8.5e-23 110.9 96 63.5
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.1e-22 110.5 120 51.7
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.9e-22 109.8 114 55.3
Eucgr.K01033 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.9e-22 109.8 133 51.9
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 2.5e-22 109.4 116 52.6
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 3.2e-22 109.0 96 62.5
HanXRQChr17g0555101 Helianthus annuus HOM05D003772 ORTHO05D004509 3.9e-20 102.1 145 44.8
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 6.7e-20 101.3 94 59.6
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 8.8e-20 100.9 128 46.9
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.2e-18 96.3 88 61.4
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 3.7e-18 95.5 109 49.5
DCAR_019180 Daucus carota HOM05D003772 ORTHO05D004509 1.4e-17 93.6 114 44.7
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 7.0e-17 91.3 123 47.2
PGR142G3565 Punica granatum HOM05D003772 ORTHO05D004509 2.6e-16 89.4 129 48.8
Sopen10g004170 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-14 81.3 86 51.2
vmacro00494 Vaccinium macrocarpon HOM05D003772 ORTHO05D004509 5.7e-11 71.6 124 44.4
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 2.8e-10 69.3 75 52.0
Aqoxy4G00788 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 1.1e-09 67.4 120 33.3
SalBow8G1020 Salvia bowleyana HOM05D003772 ORTHO05D004509 1.1e-09 67.4 69 52.2
Nn4g24929 Nelumbo nucifera HOM05D003772 ORTHO05D004509 2.7e-08 62.8 101 41.6
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 1.7e-07 60.1 76 46.1
Nn2g13184 Nelumbo nucifera HOM05D003772 ORTHO05D004509 2.2e-07 59.7 55 54.5
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 2.2e-07 59.7 88 40.9
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 2.9e-07 59.3 84 42.9
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 5.0e-07 58.5 129 31.0
Zm00001eb090900 Zea mays HOM05D003772 ORTHO05D004509 2.5e-06 56.2 68 50.0
Rhsim06G0141600 Rhododendron simsii HOM05D003772 ORTHO05D004509 4.2e-06 55.5 51 54.9
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 4.2e-06 55.5 91 41.8
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 4.2e-06 55.5 86 39.5
Dinv16953 Davidia involucrata HOM05D008378 ORTHO05D010346 9.4e-06 54.3 89 40.4
Migut.D01994 Erythranthe guttata HOM05D008378 ORTHO05D010346 9.4e-06 54.3 82 41.5


User provided reference genes

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