Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p19930 Brassica napus HOM05D003036 ORTHO05D009331 1.6e-38 162.2 75 100.0
BraA08t33950Z Brassica rapa HOM05D003036 ORTHO05D027288 8.2e-19 96.7 45 97.8
BcaC06g32606 Brassica carinata HOM05D003036 ORTHO05D009331 2.6e-12 75.1 53 69.8
C07p56410 Brassica napus HOM05D003036 ORTHO05D009331 7.5e-12 73.6 52 69.2
BolC7t46120H Brassica oleracea HOM05D003036 ORTHO05D009331 7.5e-12 73.6 52 69.2
BraA03t14901Z Brassica rapa HOM05D003036 ORTHO05D009331 9.7e-12 73.2 52 69.2
Sp7g26750 Schrenkiella parvula HOM05D003036 ORTHO05D009331 9.7e-12 73.2 52 69.2
Thhalv10025669m.g Eutrema salsugineum HOM05D003036 ORTHO05D009331 1.3e-11 72.8 53 67.9
A03p58390 Brassica napus HOM05D003036 ORTHO05D009331 3.7e-11 71.2 52 65.4
BolC8t48775H Brassica oleracea HOM05D003036 ORTHO05D027288 3.7e-11 71.2 34 91.2
Aa31LG2G21630 Aethionema arabicum HOM05D003036 ORTHO05D009331 1.1e-10 69.7 53 64.2
CARHR236530 Cardamine hirsuta HOM05D003036 ORTHO05D009331 1.8e-10 68.9 53 62.3
Cpa.g.sc87.75 Carica papaya HOM05D003036 ORTHO05D009331 4.1e-10 67.8 53 60.4
Glyma.13G129300 Glycine max HOM05D003036 ORTHO05D009331 4.1e-10 67.8 58 55.2
Gohir.A07G202700 Gossypium hirsutum HOM05D003036 ORTHO05D009331 5.3e-10 67.4 58 56.9
Lalb_Chr02g0152911 Lupinus albus HOM05D003036 ORTHO05D009331 5.3e-10 67.4 58 53.4
TPR.G28994 Trifolium pratense HOM05D003036 ORTHO05D009331 7.0e-10 67.0 53 58.5
VMungo0720G0945 Vigna mungo HOM05D003036 ORTHO05D009331 7.0e-10 67.0 58 53.4
AL7G23760 Arabidopsis lyrata HOM05D003036 ORTHO05D009331 9.1e-10 66.6 53 62.3
ClCG07G001580 Citrullus lanatus HOM05D003036 ORTHO05D009331 9.1e-10 66.6 58 51.7
CsaV3_3G028580 Cucumis sativus L. HOM05D003036 ORTHO05D009331 9.1e-10 66.6 58 51.7
Phvul.008G133800 Phaseolus vulgaris HOM05D003036 ORTHO05D009331 9.1e-10 66.6 58 53.4
Psat6g065200 Pisum sativum HOM05D003036 ORTHO05D009331 9.1e-10 66.6 58 55.2
Potri.014G194500 Populus trichocarpa HOM05D003036 ORTHO05D009331 9.1e-10 66.6 53 58.5
arahy.Tifrunner.gnm1.ann1.PYW4YI Arachis hypogaea HOM05D003036 ORTHO05D009331 1.2e-09 66.2 58 53.4
arahy.Tifrunner.gnm1.ann1.S4J522 Arachis hypogaea HOM05D003036 ORTHO05D009331 1.2e-09 66.2 58 53.4
Carub.0007s1190 Capsella rubella HOM05D003036 ORTHO05D009331 1.2e-09 66.2 53 62.3
Ca_09629_v3 Cicer arietinum L. HOM05D003036 ORTHO05D009331 1.2e-09 66.2 53 56.6
Atru.chr5.1919 Acer truncatum HOM05D003036 ORTHO05D009331 1.6e-09 65.9 53 60.4
Gohir.D07G208900 Gossypium hirsutum HOM05D003036 ORTHO05D009331 1.6e-09 65.9 58 55.2
Gorai.001G235900 Gossypium raimondii HOM05D003036 ORTHO05D009331 1.6e-09 65.9 58 55.2
Lj5g0022856 Lotus japonicus HOM05D003036 ORTHO05D009331 1.6e-09 65.9 53 56.6
Medtr1g069240 Medicago truncatula HOM05D003036 ORTHO05D009331 1.6e-09 65.9 53 58.5
Thecc.01G245500 Theobroma cacao HOM05D003036 ORTHO05D009331 1.6e-09 65.9 53 58.5
AT4G28740 Arabidopsis thaliana HOM05D003036 ORTHO05D009331 2.0e-09 65.5 53 60.4
COL.COLO4_36322 Corchorus olitorius HOM05D003036 ORTHO05D009331 2.0e-09 65.5 53 56.6
MELO3C012814.2 Cucumis melo HOM05D003036 ORTHO05D009331 2.0e-09 65.5 58 50.0
Sabra14G0143000 Salix brachista HOM05D003036 ORTHO05D009331 2.0e-09 65.5 53 56.6
Sed0021737 Sechium edule HOM05D003036 ORTHO05D009331 2.0e-09 65.5 58 51.7
GSVIVG01028479001 Vitis vinifera HOM05D003036 ORTHO05D009331 2.7e-09 65.1 53 56.6
CiPaw.04G192000 Carya illinoinensis HOM05D003036 ORTHO05D009331 3.5e-09 64.7 53 56.6
Haze_24735 Corylus avellana HOM05D003036 ORTHO05D009331 3.5e-09 64.7 53 56.6
Eucgr.H00829 Eucalyptus grandis HOM05D003036 ORTHO05D009331 3.5e-09 64.7 53 56.6
Lj2A1137T46 Lonicera japonica HOM05D003036 ORTHO05D009331 3.5e-09 64.7 53 56.6
MD10G1171900 Malus domestica HOM05D003036 ORTHO05D009331 4.5e-09 64.3 53 54.7
Nn3g19850 Nelumbo nucifera HOM05D003036 ORTHO05D009331 5.9e-09 63.9 53 56.6
Ciclev10021056m.g Citrus clementina HOM05D003036 ORTHO05D009331 7.7e-09 63.5 53 56.6
Manes.13G042300 Manihot esculenta HOM05D003036 ORTHO05D009331 7.7e-09 63.5 53 54.7
Nitab4.5_0000385g0210 Nicotiana tabacum HOM05D003036 ORTHO05D009331 7.7e-09 63.5 53 56.6
Nitab4.5_0004333g0030 Nicotiana tabacum HOM05D003036 ORTHO05D009331 7.7e-09 63.5 53 56.6
Prupe.8G210100 Prunus persica HOM05D003036 ORTHO05D009331 1.0e-08 63.2 53 52.8
Rhsim01G0258700 Rhododendron simsii HOM05D002582 ORTHO05D002781 1.0e-08 63.2 53 54.7
RcHm_v2.0_Chr6g0285631 Rosa chinensis HOM05D003036 ORTHO05D009331 1.0e-08 63.2 53 54.7
Sopen09g025310 Solanum pennellii HOM05D003036 ORTHO05D009331 1.3e-08 62.8 54 55.6
PGSC0003DMG400022024 Solanum tuberosum HOM05D003036 ORTHO05D009331 1.3e-08 62.8 60 53.3
Ah.08g213840 Amaranthus hybridus HOM05D003036 ORTHO05D009331 1.7e-08 62.4 53 56.6
QL09p043411 Quercus lobata HOM05D003036 ORTHO05D009331 1.7e-08 62.4 53 56.6
Sc05g0002520 Simmondsia chinensis HOM05D003036 ORTHO05D009331 1.7e-08 62.4 54 53.7
AUR62025396 Chenopodium quinoa HOM05D003036 ORTHO05D009331 2.2e-08 62.0 53 52.8
CAN.G15.15 Capsicum annuum HOM05D003036 ORTHO05D009331 2.9e-08 61.6 53 52.8
DCAR_000543 Daucus carota HOM05D003036 ORTHO05D009331 2.9e-08 61.6 53 54.7
Migut.D00497 Erythranthe guttata HOM05D003036 ORTHO05D009331 2.9e-08 61.6 53 52.8
FvH4_2g19970 Fragaria vesca HOM05D003036 ORTHO05D009331 2.9e-08 61.6 53 54.7
FAN24G2514 Fragaria x ananassa HOM05D003036 ORTHO05D009331 2.9e-08 61.6 53 54.7
HanXRQChr15g0468111 Helianthus annuus HOM05D003036 ORTHO05D009331 2.9e-08 61.6 53 56.6
EL10Ac7g17750 Beta vulgaris HOM05D003036 ORTHO05D009331 3.8e-08 61.2 53 52.8
DCAR_004698 Daucus carota HOM05D003036 ORTHO05D009331 3.8e-08 61.2 53 56.6
THA.LOC104804029 Tarenaya hassleriana HOM05D003036 ORTHO05D009331 3.8e-08 61.2 61 55.7
vmacro14778 Vaccinium macrocarpon HOM05D003036 ORTHO05D009331 3.8e-08 61.2 53 52.8
Cc01_g17510 Coffea canephora HOM05D003036 ORTHO05D009331 5.0e-08 60.8 53 52.8
SalBow4G2998 Salvia bowleyana HOM05D003036 ORTHO05D009331 5.0e-08 60.8 53 52.8
Zm00001eb077910 Zea mays HOM05D003036 ORTHO05D009331 5.0e-08 60.8 53 52.8
MSTRG.21448 Avicennia marina HOM05D003036 ORTHO05D009331 6.5e-08 60.5 53 52.8
AUR62008850 Chenopodium quinoa HOM05D003036 ORTHO05D009331 6.5e-08 60.5 53 50.9
FAN15G0853 Fragaria x ananassa HOM05D003036 ORTHO05D009331 6.5e-08 60.5 53 52.8
FAN27G1753 Fragaria x ananassa HOM05D003036 ORTHO05D009331 6.5e-08 60.5 53 52.8
PSO210G3998 Papaver somniferum HOM05D003036 ORTHO05D009331 1.1e-07 59.7 52 51.9
SGA_v2.0_scaffold1G00683 Striga asiatica HOM05D003036 ORTHO05D009331 1.1e-07 59.7 53 52.8
CDE07G0700 Ceratophyllum demersum HOM05D003036 ORTHO05D009331 1.5e-07 59.3 53 47.2
ECA247G1318 Erigeron canadensis HOM05D003036 ORTHO05D009331 1.5e-07 59.3 53 52.8
Lsat_1_v5_gn_9_11980 Lactuca sativa HOM05D003036 ORTHO05D009331 1.5e-07 59.3 53 52.8
MBI07_g08921_MAGBIO Magnolia biondii HOM05D003036 ORTHO05D009331 1.5e-07 59.3 53 50.9
PSO761G0602 Papaver somniferum HOM05D003036 ORTHO05D009331 1.5e-07 59.3 52 51.9
Hund18340 Selenicereus undatus HOM05D003036 ORTHO05D009331 1.5e-07 59.3 53 52.8
unitig_8.g3077 Utricularia gibba HOM05D003036 ORTHO05D009331 1.5e-07 59.3 53 50.9
CANSAT01G1542 Cannabis sativa HOM05D003036 ORTHO05D009331 1.9e-07 58.9 52 55.8
CDE07G1881 Ceratophyllum demersum HOM05D003036 ORTHO05D009331 1.9e-07 58.9 51 49.0
Aqoxy5G00083 Aquilegia oxysepala HOM05D006620 ORTHO05D008921 2.5e-07 58.5 53 47.2
HPP92_022681 Vanilla planifolia HOM05D003036 ORTHO05D009331 2.5e-07 58.5 58 48.3
CSS0019938 Camellia sinensis var. sinensis HOM05D003036 ORTHO05D009331 4.2e-07 57.8 53 49.1
TAR362G0272 Trochodendron aralioides HOM05D003036 ORTHO05D009331 5.5e-07 57.4 53 50.9
ATR0787G112 Amborella trichopoda HOM05D003036 ORTHO05D009331 9.4e-07 56.6 53 47.2
C08p11060 Brassica napus HOM05D003036 ORTHO05D027288 9.4e-07 56.6 27 88.9
SMO339G0016 Selaginella moellendorffii HOM05D003036 ORTHO05D009331 8.0e-06 53.5 55 49.1


User provided reference genes

Program Settings