Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 8.8e-160 567.0 306 100.0
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 4.4e-159 564.7 306 99.7
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 2.2e-158 562.4 306 99.3
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 2.4e-157 558.9 306 98.7
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 7.2e-154 547.4 309 96.8
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 1.0e-139 500.4 308 89.9
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 9.4e-138 493.8 314 85.4
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 3.6e-137 491.9 312 87.8
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 3.6e-137 491.9 312 87.8
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 1.3e-134 483.4 319 82.8
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.7e-134 483.0 312 86.2
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 3.3e-130 468.8 313 81.8
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 4.9e-126 454.9 313 84.3
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 1.0e-123 447.2 313 83.4
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 5.0e-123 444.9 314 83.1
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 2.8e-121 439.1 313 80.2
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.4e-117 426.8 313 79.6
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 1.2e-111 407.1 311 74.3
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 1.4e-104 383.6 315 71.7
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 6.8e-96 354.8 310 64.2
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 8.9e-96 354.4 307 64.5
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 8.9e-96 354.4 307 64.2
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 8.9e-96 354.4 307 64.2
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 6.4e-94 348.2 304 63.2
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 1.1e-93 347.4 311 61.1
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 1.2e-92 344.0 306 63.1
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 2.7e-92 342.8 302 62.6
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 1.3e-91 340.5 311 61.7
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 2.3e-91 339.7 311 62.7
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 2.3e-91 339.7 287 64.5
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 3.9e-91 339.0 304 62.2
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 5.1e-91 338.6 314 60.2
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 6.6e-91 338.2 314 60.8
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 1.1e-90 337.4 306 63.7
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 5.6e-90 335.1 301 63.1
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 5.6e-90 335.1 306 61.1
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 7.3e-90 334.7 299 60.9
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 9.6e-90 334.3 307 61.2
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 3.6e-89 332.4 307 61.2
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 1.1e-88 330.9 286 65.4
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 1.1e-88 330.9 314 61.1
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.4e-88 330.5 313 59.4
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.4e-88 329.7 314 61.1
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.4e-88 329.7 314 61.1
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 3.1e-88 329.3 314 58.6
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 4.0e-88 328.9 311 59.2
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 6.9e-88 328.2 311 59.5
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.2e-87 327.4 314 60.8
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 1.5e-87 327.0 309 59.9
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 1.5e-87 327.0 310 58.1
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.0e-87 326.6 314 60.5
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 2.0e-87 326.6 311 60.8
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 2.6e-87 326.2 300 64.0
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.4e-87 325.9 314 60.5
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 3.4e-87 325.9 308 60.4
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 4.4e-87 325.5 306 61.1
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.3e-86 323.9 308 62.3
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 2.9e-86 322.8 313 59.1
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 2.9e-86 322.8 314 58.6
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 4.9e-86 322.0 304 61.5
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 4.9e-86 322.0 304 61.5
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 4.9e-86 322.0 283 62.9
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 6.4e-86 321.6 303 59.7
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 8.4e-86 321.2 314 58.3
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 3.2e-85 319.3 307 60.6
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 4.2e-85 318.9 308 60.1
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 1.2e-84 317.4 312 59.0
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 2.7e-84 316.2 308 59.4
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 3.5e-84 315.8 312 59.0
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 3.9e-83 312.4 288 59.4
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 8.7e-83 311.2 308 57.5
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.5e-82 310.5 303 60.7
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 3.3e-82 309.3 312 57.1
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 7.3e-82 308.1 312 57.4
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 2.8e-81 306.2 267 64.0
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 4.8e-81 305.4 309 59.9
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 1.1e-80 304.3 306 55.6
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 1.8e-80 303.5 305 60.0
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 2.4e-80 303.1 307 56.4
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 3.1e-80 302.8 313 60.1
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 5.3e-80 302.0 294 51.0
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 6.9e-80 301.6 311 56.3
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 6.9e-80 301.6 304 55.9
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 2.0e-79 300.1 262 60.3
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 4.5e-79 298.9 314 58.3
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 9.9e-79 297.7 306 58.8
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 1.3e-78 297.4 311 55.9
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 1.7e-78 297.0 304 56.6
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 2.2e-78 296.6 306 57.5
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 8.4e-78 294.7 309 57.0
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.1e-77 294.3 299 59.9
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 1.4e-77 293.9 239 65.7
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 1.4e-77 293.9 302 57.9
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 3.2e-77 292.7 249 64.3
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 1.6e-76 290.4 309 58.3
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 7.9e-76 288.1 313 53.4
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 1.0e-75 287.7 305 57.0
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.8e-75 287.0 309 57.3
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 1.8e-75 287.0 282 57.4
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 2.3e-75 286.6 294 55.1
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 5.1e-75 285.4 365 50.1
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 2.5e-74 283.1 314 54.1
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 3.3e-74 282.7 306 52.9
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 7.4e-74 281.6 313 54.6
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.1e-73 280.0 308 52.9
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 2.1e-73 280.0 311 51.1
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 2.1e-73 280.0 314 51.9
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.8e-73 279.6 308 51.6
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 8.1e-73 278.1 314 49.4
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 1.8e-72 276.9 315 53.3
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 4.0e-72 275.8 310 58.1
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 5.3e-72 275.4 309 57.3
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 6.9e-72 275.0 268 58.6
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 7.9e-68 261.5 277 55.2
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 6.7e-67 258.5 317 51.7
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 6.9e-64 248.4 268 54.5
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.2e-63 247.7 228 55.3
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 3.8e-62 242.7 315 51.4
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 1.9e-61 240.4 301 49.5
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 9.3e-61 238.0 320 50.9
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 4.6e-60 235.7 228 55.7
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 2.8e-57 226.5 235 58.3
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 4.2e-53 212.6 197 57.9
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 2.5e-50 203.4 312 45.5
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 3.4e-47 193.0 184 59.2
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 3.8e-46 189.5 204 48.5
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 6.7e-43 178.7 264 40.5
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 4.7e-36 156.0 209 44.5
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 8.2e-33 145.2 98 72.4
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 1.1e-29 134.8 125 60.0
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 1.3e-25 121.3 291 36.1
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 3.7e-25 119.8 199 36.7
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 1.8e-24 117.5 236 30.9
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.7e-22 110.9 140 51.4
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.7e-22 110.9 140 51.4
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 3.2e-21 106.7 231 32.0
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 1.4e-19 101.3 68 66.2
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.4e-19 101.3 119 55.5
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.2e-18 98.2 66 66.7
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 2.8e-17 93.6 64 70.3
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 1.1e-16 91.7 69 66.7
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.1e-13 81.6 52 69.2
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.4e-10 70.1 45 66.7
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 5.7e-10 69.3 50 62.0
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.7e-09 67.8 61 59.0
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 2.2e-09 67.4 102 52.0
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 1.8e-08 64.3 123 43.1
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.6e-07 61.2 39 69.2
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 7.8e-07 58.9 44 68.2
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.3e-06 58.2 60 48.3
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 6.6e-06 55.8 132 42.4


User provided reference genes

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