Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p18910 Brassica napus HOM05D005782 ORTHO05D007436 3.7e-121 438.3 240 100.0
Sp7g28920 Schrenkiella parvula HOM05D005782 ORTHO05D007436 3.0e-62 242.7 321 52.6
C01p07890 Brassica napus HOM05D005782 ORTHO05D007436 1.5e-61 240.4 320 56.6
BolC1t00776H Brassica oleracea HOM05D005782 ORTHO05D007436 1.5e-61 240.4 320 56.6
BcaC09g51891 Brassica carinata HOM05D005782 ORTHO05D007436 1.9e-61 240.0 320 56.9
BraA01t00665Z Brassica rapa HOM05D005782 ORTHO05D007436 7.3e-61 238.0 290 55.2
BcaNung03419 Brassica carinata HOM05D005782 ORTHO05D007436 1.4e-59 233.8 325 55.7
A01p07130 Brassica napus HOM05D005782 ORTHO05D007436 2.4e-59 233.0 291 55.0
Thhalv10025215m.g Eutrema salsugineum HOM05D005782 ORTHO05D007436 8.9e-59 231.1 324 54.0
AT4G31040 Arabidopsis thaliana HOM05D005782 ORTHO05D007436 2.6e-58 229.6 322 55.3
AL7G21030 Arabidopsis lyrata HOM05D005782 ORTHO05D007436 1.9e-56 223.4 293 52.6
CARHR238950 Cardamine hirsuta HOM05D005782 ORTHO05D007436 7.1e-56 221.5 325 48.6
Carub.0007s0948 Capsella rubella HOM05D005782 ORTHO05D007436 1.3e-54 217.2 324 52.8
THA.LOC104803572 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 1.5e-53 213.8 310 48.7
Aa31LG2G19280 Aethionema arabicum HOM05D005782 ORTHO05D007436 1.3e-49 200.7 296 47.6
BcaNung02727 Brassica carinata HOM05D005782 ORTHO05D007436 3.2e-48 196.1 275 52.7
A03p60520 Brassica napus HOM05D005782 ORTHO05D007436 2.1e-47 193.4 270 49.6
BraA03t15091Z Brassica rapa HOM05D005782 ORTHO05D007436 2.1e-47 193.4 270 49.6
CsaV3_2G009240 Cucumis sativus L. HOM05D005782 ORTHO05D007436 2.4e-43 179.9 295 42.4
CSS0047952 Camellia sinensis var. sinensis HOM05D005782 ORTHO05D007436 1.2e-42 177.6 293 44.0
CAN.G63.1 Capsicum annuum HOM05D005782 ORTHO05D007436 4.5e-42 175.6 294 45.6
Thecc.09G201300 Theobroma cacao HOM05D005782 ORTHO05D007436 7.6e-42 174.9 289 44.3
GSVIVG01032240001 Vitis vinifera HOM05D005782 ORTHO05D007436 9.9e-42 174.5 291 45.4
Sc09g0007530 Simmondsia chinensis HOM05D005782 ORTHO05D007436 2.2e-41 173.3 285 43.2
PGR142G1608 Punica granatum HOM05D005782 ORTHO05D007436 3.8e-41 172.6 309 43.0
Nitab4.5_0000170g0200 Nicotiana tabacum HOM05D005782 ORTHO05D007436 1.1e-40 171.0 301 42.9
Potri.006G080100 Populus trichocarpa HOM05D005782 ORTHO05D007436 1.4e-40 170.6 305 42.6
Sed0017765 Sechium edule HOM05D005782 ORTHO05D007436 1.4e-40 170.6 295 41.4
MSTRG.19410 Avicennia marina HOM05D005782 ORTHO05D007436 3.2e-40 169.5 296 42.9
Oeu021242.1 Olea europaea HOM05D005782 ORTHO05D007436 3.2e-40 169.5 296 42.9
Eucgr.C02158 Eucalyptus grandis HOM05D005782 ORTHO05D007436 5.5e-40 168.7 284 45.1
Sabra06G0060600 Salix brachista HOM05D005782 ORTHO05D007436 5.5e-40 168.7 304 42.8
Gohir.D05G000500 Gossypium hirsutum HOM05D005782 ORTHO05D007436 7.1e-40 168.3 301 42.5
Potri.018G150000 Populus trichocarpa HOM05D005782 ORTHO05D007436 1.2e-39 167.5 305 41.6
DCAR_014583 Daucus carota HOM05D005782 ORTHO05D010280 1.6e-39 167.2 294 41.8
Cc06_g23670 Coffea canephora HOM05D005782 ORTHO05D007436 2.1e-39 166.8 295 40.7
Gorai.009G000300 Gossypium raimondii HOM05D005782 ORTHO05D007436 2.1e-39 166.8 301 42.2
Atru.chr7.1036 Acer truncatum HOM05D005782 ORTHO05D007436 2.7e-39 166.4 273 43.2
Nn8g41244 Nelumbo nucifera HOM05D005782 ORTHO05D007436 3.5e-39 166.0 291 41.6
SGA_v2.0_scaffold318G48485 Striga asiatica HOM05D005782 ORTHO05D007436 3.5e-39 166.0 297 43.8
Gohir.A05G000300 Gossypium hirsutum HOM05D005782 ORTHO05D007436 6.0e-39 165.2 299 41.8
Manes.05G205900 Manihot esculenta HOM05D005782 ORTHO05D007436 7.9e-39 164.9 292 42.8
TWI32G0667 Tripterygium wilfordii HOM05D005782 ORTHO05D007436 1.8e-38 163.7 288 42.4
Migut.J00857 Erythranthe guttata HOM05D005782 ORTHO05D007436 2.3e-38 163.3 293 42.3
MSTRG.5969 Avicennia marina HOM05D005782 ORTHO05D007436 3.9e-38 162.5 299 42.1
Actinidia07556 Actinidia chinensis HOM05D005782 ORTHO05D007436 5.1e-38 162.2 299 41.1
VMungo0464G0621 Vigna mungo HOM05D005782 ORTHO05D007436 5.1e-38 162.2 295 41.4
Ah.13g066690 Amaranthus hybridus HOM05D005782 ORTHO05D007436 8.7e-38 161.4 322 39.1
TAR383G0506 Trochodendron aralioides HOM05D005782 ORTHO05D007436 1.1e-37 161.0 291 40.9
EL10Ac3g05861 Beta vulgaris HOM05D005782 ORTHO05D007436 2.5e-37 159.8 301 41.2
AUR62015437 Chenopodium quinoa HOM05D005782 ORTHO05D007436 3.3e-37 159.5 326 39.3
Nitab4.5_0000807g0130 Nicotiana tabacum HOM05D005782 ORTHO05D007436 7.4e-37 158.3 274 43.8
Aqoxy7G02605 Aquilegia oxysepala HOM05D005782 ORTHO05D007436 1.3e-36 157.5 293 40.6
Duzib150G0032 Durio zibethinus HOM05D005782 ORTHO05D007436 1.6e-36 157.1 279 43.0
FvH4_4g00180 Fragaria vesca HOM05D005782 ORTHO05D007436 1.6e-36 157.1 278 41.4
Glyma.08G359700 Glycine max HOM05D005782 ORTHO05D007436 2.1e-36 156.8 299 39.1
MELO3C003909.2 Cucumis melo HOM05D005782 ORTHO05D007436 3.7e-36 156.0 266 40.6
ATR0626G413 Amborella trichopoda HOM05D005782 ORTHO05D007436 8.2e-36 154.8 285 41.1
MBI16_g00821_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 1.4e-35 154.1 295 40.7
MBI13_g33574_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 3.1e-35 152.9 291 40.2
Prupe.1G002100 Prunus persica HOM05D005782 ORTHO05D007436 6.9e-35 151.8 303 38.9
Haze_21249 Corylus avellana HOM05D005782 ORTHO05D007436 9.0e-35 151.4 368 34.5
RcHm_v2.0_Chr4g0384781 Rosa chinensis HOM05D005782 ORTHO05D007436 9.0e-35 151.4 280 40.0
C07p58400 Brassica napus HOM05D005782 ORTHO05D007436 1.2e-34 151.0 202 50.5
arahy.Tifrunner.gnm1.ann1.PZIB41 Arachis hypogaea HOM05D005782 ORTHO05D007436 3.4e-34 149.4 312 36.5
Lalb_Chr24g0401711 Lupinus albus HOM05D005782 ORTHO05D007436 3.4e-34 149.4 287 39.0
HanXRQChr03g0067061 Helianthus annuus HOM05D005782 ORTHO05D007436 1.0e-33 147.9 303 38.9
BolC7t46295H Brassica oleracea HOM05D005782 ORTHO05D007436 1.3e-33 147.5 204 50.5
MD04G1001800 Malus domestica HOM05D005782 ORTHO05D007436 1.3e-33 147.5 285 39.3
arahy.Tifrunner.gnm1.ann1.05JXYY Arachis hypogaea HOM05D005782 ORTHO05D007436 2.9e-33 146.4 311 35.7
Lj2g0003070 Lotus japonicus HOM05D005782 ORTHO05D007436 2.9e-33 146.4 290 39.7
Sopen07g022440 Solanum pennellii HOM05D005782 ORTHO05D007436 2.9e-33 146.4 295 42.4
ECA240G2713 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.9e-33 145.6 279 39.8
Os08g0224300 Oryza sativa ssp. japonica HOM05D005782 ORTHO05D007436 6.5e-33 145.2 277 40.1
TPR.G21340 Trifolium pratense HOM05D005782 ORTHO05D007436 8.4e-33 144.8 296 38.5
AUR62002224 Chenopodium quinoa HOM05D005782 ORTHO05D007436 2.5e-32 143.3 274 39.8
CANSAT80G1379 Cannabis sativa HOM05D005782 ORTHO05D007436 1.2e-31 141.0 310 39.0
FAN12G2371 Fragaria x ananassa HOM05D005782 ORTHO05D007436 1.2e-31 141.0 309 37.2
MD10G1290500 Malus domestica HOM05D005782 ORTHO05D007436 2.1e-31 140.2 257 42.8
THA.LOC104804495 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 4.6e-31 139.0 121 67.8
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 6.0e-31 138.7 233 45.9
Rhsim01G0103700 Rhododendron simsii HOM05D005782 ORTHO05D007436 6.0e-31 138.7 298 38.9
PSO063G1085 Papaver somniferum HOM05D005782 ORTHO05D007436 3.9e-30 136.0 297 38.0
CiPaw.08G000500 Carya illinoinensis HOM05D005782 ORTHO05D007436 5.1e-30 135.6 193 48.2
RhsimUnG0238700 Rhododendron simsii HOM05D005782 ORTHO05D007436 6.7e-30 135.2 307 37.8
PSO170G1242 Papaver somniferum HOM05D005782 ORTHO05D007436 8.7e-30 134.8 294 38.1
vmacro20737 Vaccinium macrocarpon HOM05D005782 ORTHO05D007436 8.7e-30 134.8 324 35.5
Cfa012886 Carpinus fangiana HOM05D005782 ORTHO05D007436 1.9e-29 133.7 279 36.2
Ciclev10033693m.g Citrus clementina HOM05D005782 ORTHO05D007436 1.9e-29 133.7 121 64.5
CDE02G4601 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 2.5e-29 133.3 271 35.8
QL11p006989 Quercus lobata HOM05D005782 ORTHO05D007436 7.4e-29 131.7 326 33.7
Hund04583 Selenicereus undatus HOM05D005782 ORTHO05D007436 2.8e-28 129.8 256 43.8
Zm00001eb404240 Zea mays HOM05D005782 ORTHO05D007436 8.2e-28 128.3 286 36.4
BcaC01g01117 Brassica carinata HOM05D005782 ORTHO05D027183 1.4e-27 127.5 255 47.8
CDE04G3649 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 1.4e-27 127.5 269 37.5
FAN22G1527 Fragaria x ananassa HOM05D005782 ORTHO05D007436 4.1e-27 125.9 272 35.7
HPP92_020428 Vanilla planifolia HOM05D005782 ORTHO05D007436 4.1e-27 125.9 122 59.8
Zm00001eb000750 Zea mays HOM05D005782 ORTHO05D007436 1.5e-26 124.0 121 59.5
Ca_25640_v3 Cicer arietinum L. HOM05D005782 ORTHO05D007436 3.4e-26 122.9 121 58.7
Zm00001eb000720 Zea mays HOM05D005782 ORTHO05D007436 1.9e-24 117.1 121 58.7
Medtr6g093210 Medicago truncatula HOM05D005782 ORTHO05D007436 2.5e-21 106.7 267 34.8
Psat1g051920 Pisum sativum HOM05D005782 ORTHO05D007436 9.7e-21 104.8 268 35.1
ClCG11G011190 Citrullus lanatus HOM05D005782 ORTHO05D007436 1.7e-20 104.0 298 31.2
Lsat_1_v5_gn_7_57180 Lactuca sativa HOM05D005782 ORTHO05D007436 8.2e-20 101.7 244 35.2
Glyma.01G001100 Glycine max HOM05D005782 ORTHO05D007436 1.2e-18 97.8 244 35.2
Lj5A796G22 Lonicera japonica HOM05D005782 ORTHO05D007436 2.0e-18 97.1 216 35.6
AagrBONN_evm.TU.Sc2ySwM_117.1743 Anthoceros agrestis HOM05D005782 ORTHO05D007436 7.7e-18 95.1 121 46.3
SEGI_19916 Sequoiadendron giganteum HOM05D005782 ORTHO05D007436 6.5e-17 92.0 121 49.6
Pp3c4_7870 Physcomitrium patens HOM05D005782 ORTHO05D007436 1.1e-16 91.3 121 44.6
Mapoly0066s0016 Marchantia polymorpha HOM05D005782 ORTHO05D007436 5.5e-16 89.0 121 43.0
Pp3c10_12270 Physcomitrium patens HOM05D005782 ORTHO05D007436 7.2e-16 88.6 121 44.6
Gohir.A05G000250 Gossypium hirsutum HOM05D005782 ORTHO05D007436 4.7e-15 85.9 225 34.7
Peaxi162Scf00474g00221 Petunia axillaris HOM05D005782 ORTHO05D007436 4.7e-15 85.9 64 68.8
FAN17G0526 Fragaria x ananassa HOM05D005782 ORTHO05D007436 2.3e-14 83.6 225 31.6
Cpa.g.sc91.69 Carica papaya HOM05D005782 ORTHO05D007436 1.5e-13 80.9 246 31.7
CBR_g84827 Chara braunii HOM05D005782 ORTHO05D007436 2.2e-12 77.0 122 43.4
Ciclev10033590m.g Citrus clementina HOM05D005782 ORTHO05D007436 1.2e-10 71.2 149 34.2
BolC3t21141H Brassica oleracea HOM05D040747 ORTHO05D027183 1.5e-10 70.9 56 91.1
unitig_578.g15870 Utricularia gibba HOM05D000412 ORTHO05D000429 1.5e-10 70.9 223 32.3
Peaxi162Scf00474g00214 Petunia axillaris HOM05D005782 ORTHO05D007436 2.0e-10 70.5 151 39.1
C03p88320 Brassica napus HOM05D040747 ORTHO05D027183 3.4e-10 69.7 56 89.3
Phvul.L001608 Phaseolus vulgaris HOM05D005782 ORTHO05D007436 3.8e-09 66.2 194 29.9
Solyc07g042800.2 Solanum lycopersicum HOM05D005782 ORTHO05D007436 5.0e-09 65.9 145 37.9
Solyc07g042820.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 1.1e-08 64.7 64 57.8
Actinidia02524 Actinidia chinensis HOM05D005782 ORTHO05D007436 2.5e-08 63.5 120 38.3
HPP92_020430 Vanilla planifolia HOM05D005782 ORTHO05D007436 1.6e-07 60.8 45 68.9
Actinidia02544 Actinidia chinensis HOM05D005782 ORTHO05D007436 8.8e-06 55.1 44 61.4


User provided reference genes

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