Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 3.3e-287 991.1 525 100.0
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 6.7e-280 966.8 547 94.9
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 5.2e-264 914.1 532 93.2
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 5.2e-264 914.1 532 93.2
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 5.3e-261 904.0 539 91.7
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 1.6e-233 812.8 550 83.1
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 1.9e-218 762.7 554 78.3
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 2.5e-210 735.7 563 77.1
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 1.4e-192 676.8 557 70.6
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 2.2e-190 669.5 561 70.6
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 6.0e-188 661.4 570 70.9
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 4.1e-176 622.1 546 71.4
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 1.5e-175 620.2 532 70.3
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 3.2e-173 612.5 560 69.5
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 5.5e-165 585.1 543 67.0
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 7.2e-165 584.7 565 66.0
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 1.6e-164 583.6 543 68.1
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 1.6e-164 583.6 543 68.1
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 1.3e-161 573.9 473 71.7
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 2.9e-113 413.3 602 50.5
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 1.0e-110 404.8 627 47.7
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.8e-57 226.9 547 35.6
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.1e-55 221.1 548 35.6
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 3.6e-55 220.3 204 68.1
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 3.0e-54 217.2 324 43.2
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 3.9e-54 216.9 604 34.6
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 3.3e-53 213.8 594 34.2
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 7.4e-53 212.6 326 43.6
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 6.9e-51 206.1 597 32.7
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 3.4e-50 203.8 622 32.3
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 7.7e-50 202.6 323 43.0
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 2.5e-48 197.6 520 35.8
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.0e-46 192.2 520 34.8
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 5.7e-45 186.4 335 43.0
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 9.7e-45 185.7 565 33.3
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 9.7e-45 185.7 555 33.7
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 9.7e-45 185.7 586 32.4
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 9.7e-45 185.7 324 41.4
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 2.2e-44 184.5 660 31.8
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 2.8e-44 184.1 607 32.5
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 3.7e-44 183.7 316 41.8
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 3.7e-44 183.7 368 39.4
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 6.3e-44 183.0 324 40.1
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 8.2e-44 182.6 339 42.5
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 7.0e-43 179.5 630 32.7
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 9.1e-43 179.1 318 40.9
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 2.0e-42 177.9 466 34.1
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 5.9e-42 176.4 587 32.2
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 3.8e-41 173.7 326 42.6
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 1.1e-40 172.2 409 37.2
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 1.4e-40 171.8 315 40.3
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 2.5e-40 171.0 537 33.5
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 4.2e-40 170.2 573 31.1
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 4.2e-40 170.2 462 34.0
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 9.4e-40 169.1 600 31.7
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 1.6e-39 168.3 585 30.9
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 2.1e-39 167.9 326 40.2
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 3.6e-39 167.2 513 33.5
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 3.6e-39 167.2 480 34.2
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 1.0e-38 165.6 294 41.2
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 1.4e-38 165.2 568 32.9
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 5.2e-38 163.3 601 30.9
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.1e-37 162.2 582 31.6
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.0e-37 161.4 362 39.2
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 7.4e-37 159.5 335 38.5
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 1.7e-36 158.3 327 36.1
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 2.2e-36 157.9 411 34.5
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 6.3e-36 156.4 337 38.6
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 1.4e-35 155.2 290 39.0
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 1.4e-35 155.2 574 30.5
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 2.4e-35 154.5 494 33.0
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.4e-35 154.5 471 33.5
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 4.1e-35 153.7 491 32.6
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 5.3e-35 153.3 591 30.6
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 9.1e-35 152.5 318 37.7
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.6e-34 151.8 581 31.7
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 2.0e-34 151.4 308 39.3
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 2.6e-34 151.0 586 31.4
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 1.0e-33 149.1 375 33.9
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 1.7e-33 148.3 513 31.0
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.1e-32 145.6 478 32.8
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 9.4e-32 142.5 410 34.1
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 9.4e-32 142.5 540 31.3
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 1.6e-31 141.7 400 34.5
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 4.7e-31 140.2 301 36.9
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 6.1e-31 139.8 314 35.0
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 1.0e-30 139.0 308 37.3
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 6.8e-30 136.3 299 35.5
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 1.5e-29 135.2 501 30.5
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 2.6e-29 134.4 552 29.7
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 2.8e-28 131.0 295 36.9
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.1e-27 129.0 533 30.6
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 7.0e-27 126.3 570 30.5
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 2.0e-26 124.8 359 33.4
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 2.7e-26 124.4 517 29.6
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 3.5e-26 124.0 515 29.7
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.0e-25 122.5 485 30.5
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.3e-25 122.1 379 32.2
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 1.1e-24 119.0 485 28.2
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 4.2e-24 117.1 552 29.9
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 1.2e-23 115.5 179 40.8
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 6.1e-23 113.2 419 30.1
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 6.8e-22 109.8 447 30.4
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 2.6e-21 107.8 429 30.8
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 5.7e-21 106.7 177 40.7
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.3e-20 105.5 564 27.7
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 1.3e-20 105.5 590 29.3
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 4.8e-20 103.6 417 31.2
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 6.3e-20 103.2 462 27.9
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 1.4e-19 102.1 428 29.4
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.8e-19 101.7 494 28.3
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 4.1e-19 100.5 297 33.3
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 7.7e-18 96.3 309 31.7
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 2.3e-17 94.7 364 29.1
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 2.9e-17 94.4 591 27.9
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 6.6e-17 93.2 167 41.9
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 1.1e-16 92.4 141 41.8
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 2.1e-15 88.2 341 28.2
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 4.7e-15 87.0 53 77.4
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 6.8e-14 83.2 237 29.5
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 9.8e-13 79.3 105 46.7
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 1.7e-12 78.6 349 29.5
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 4.1e-11 73.9 284 29.6
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 4.1e-11 73.9 75 61.3
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 3.5e-10 70.9 161 36.6
HanXRQChr06g0180441 Helianthus annuus HOM05D006756 ORTHO05D001869 2.3e-09 68.2 241 28.6
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 3.9e-09 67.4 90 42.2
A02p30240 Brassica napus HOM05D003055 ORTHO05D027220 5.0e-09 67.0 47 68.1
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 1.1e-08 65.9 90 41.1
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 3.3e-08 64.3 334 26.9
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 9.5e-08 62.8 197 31.0
BraA01t02912Z Brassica rapa HOM05D005642 ORTHO05D006672 4.7e-07 60.5 70 45.7
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 4.7e-07 60.5 302 28.5
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 6.1e-07 60.1 361 27.1
Psat1g024440 Pisum sativum HOM05D006756 ORTHO05D001869 4.0e-06 57.4 245 26.5
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 6.8e-06 56.6 524 25.4


User provided reference genes

Program Settings