Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p18580 Brassica napus HOM05D004099 ORTHO05D004777 1.5e-105 386.3 221 100.0
BraA08t33820Z Brassica rapa HOM05D004099 ORTHO05D004777 1.5e-100 369.8 221 95.9
C03p87870 Brassica napus HOM05D004099 ORTHO05D004777 3.1e-98 362.1 221 94.1
BolC3t21102H Brassica oleracea HOM05D004099 ORTHO05D004777 3.1e-98 362.1 221 94.1
BcaC01g01082 Brassica carinata HOM05D004099 ORTHO05D004777 2.9e-96 355.5 221 92.8
BcaB03g12702 Brassica carinata HOM05D004099 ORTHO05D004777 2.2e-83 312.8 230 85.2
Thhalv10026165m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 3.0e-69 265.8 231 74.5
Sp7g29350 Schrenkiella parvula HOM05D004099 ORTHO05D004777 2.1e-62 243.0 225 73.3
BcaNung04135 Brassica carinata HOM05D004099 ORTHO05D004777 3.3e-60 235.7 221 72.4
C07p58690 Brassica napus HOM05D004099 ORTHO05D004777 3.3e-60 235.7 221 72.4
BolC7t46319H Brassica oleracea HOM05D004099 ORTHO05D004777 3.7e-59 232.3 214 73.4
A03p60800 Brassica napus HOM05D004099 ORTHO05D004777 8.5e-56 221.1 221 68.8
BraA03t15116Z Brassica rapa HOM05D004099 ORTHO05D004777 8.5e-56 221.1 221 68.8
BcaNung04134 Brassica carinata HOM05D004099 ORTHO05D004777 3.0e-53 212.6 220 68.6
CARHR239380 Cardamine hirsuta HOM05D004099 ORTHO05D004777 5.7e-52 208.4 216 69.0
AL7G20550 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 4.8e-51 205.3 228 67.1
AT4G31510 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 1.4e-45 187.2 229 64.2
Sp4g03550 Schrenkiella parvula HOM05D004099 ORTHO05D004777 2.1e-38 163.3 243 56.0
A04p18910 Brassica napus HOM05D004099 ORTHO05D004777 8.9e-37 157.9 246 49.6
THA.LOC104803870 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 2.6e-36 156.4 242 53.3
THA.LOC104819932 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 3.7e-35 152.5 176 55.7
AL4G15100 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 4.9e-35 152.1 236 53.4
Aa31LG2G18840 Aethionema arabicum HOM05D004099 ORTHO05D004777 1.1e-34 151.0 245 53.9
BraA09t41015Z Brassica rapa HOM05D004099 ORTHO05D004777 1.8e-34 150.2 248 48.8
A09p56190 Brassica napus HOM05D004099 ORTHO05D004777 4.1e-34 149.1 248 48.4
BraA04t17493Z Brassica rapa HOM05D004099 ORTHO05D004777 4.1e-34 149.1 256 50.8
AT2G24550 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 5.4e-34 148.7 236 53.8
Thhalv10000300m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 9.2e-34 147.9 193 57.5
BcaB06g27984 Brassica carinata HOM05D004099 ORTHO05D004777 5.9e-33 145.2 247 48.6
BcaC07g40919 Brassica carinata HOM05D004099 ORTHO05D004777 1.0e-32 144.4 242 48.3
C08p39160 Brassica napus HOM05D004099 ORTHO05D004777 1.0e-32 144.4 242 48.3
BolC8t51489H Brassica oleracea HOM05D004099 ORTHO05D004777 1.0e-32 144.4 242 48.3
CARHR117460 Cardamine hirsuta HOM05D004099 ORTHO05D004777 1.7e-32 143.7 235 54.0
Carub.0004s0391 Capsella rubella HOM05D004099 ORTHO05D004777 2.3e-32 143.3 243 50.2
BcaC07g40920 Brassica carinata HOM05D004099 ORTHO05D004777 3.0e-32 142.9 242 47.1
Aa31LG7G12320 Aethionema arabicum HOM05D004099 ORTHO05D004777 1.9e-31 140.2 242 48.8
Carub.0007s0905 Capsella rubella HOM05D004099 ORTHO05D004777 1.2e-30 137.5 236 49.2
BcaB06g27983 Brassica carinata HOM05D004099 ORTHO05D004777 2.1e-30 136.7 244 48.4
BcaC02g08443 Brassica carinata HOM05D004099 ORTHO05D004777 2.1e-30 136.7 244 48.4
C04p54150 Brassica napus HOM05D004099 ORTHO05D004777 2.1e-30 136.7 244 48.4
BcaNung01519 Brassica carinata HOM05D004099 ORTHO05D004777 1.0e-29 134.4 125 69.6
BolC4t26967H Brassica oleracea HOM05D004099 ORTHO05D004777 1.8e-29 133.7 244 48.0
Thhalv10029499m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 1.5e-28 130.6 189 50.3
BcaNung04136 Brassica carinata HOM05D004099 ORTHO05D004777 2.8e-22 109.8 126 63.5
Duzib168G0203 Durio zibethinus HOM05D004099 ORTHO05D004777 1.1e-21 107.8 180 46.7
Gohir.A05G063600 Gossypium hirsutum HOM05D004099 ORTHO05D004777 4.0e-21 105.9 181 45.9
THA.LOC104814974 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 1.5e-20 104.0 196 44.4
Gohir.D05G066200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 2.2e-19 100.1 181 47.0
Sabra06G0211400 Salix brachista HOM05D004099 ORTHO05D004777 2.2e-19 100.1 262 41.2
Duzib150G0962 Durio zibethinus HOM05D004099 ORTHO05D004777 1.4e-18 97.4 157 46.5
Gohir.D06G107300 Gossypium hirsutum HOM05D004099 ORTHO05D004777 1.4e-18 97.4 235 37.4
Gorai.009G067000 Gossypium raimondii HOM05D004099 ORTHO05D004777 1.4e-18 97.4 181 46.4
THA.LOC104803325 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 2.4e-18 96.7 147 46.9
Gohir.A06G105200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 3.2e-18 96.3 235 37.0
Cpa.g.sc23.25 Carica papaya HOM05D004099 ORTHO05D004777 4.1e-18 95.9 163 44.8
Thhalv10004845m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 4.1e-18 95.9 202 41.1
Gorai.010G122000 Gossypium raimondii HOM05D004099 ORTHO05D004777 5.4e-18 95.5 235 37.0
Thecc.09G008200 Theobroma cacao HOM05D004099 ORTHO05D004777 1.6e-17 94.0 247 39.3
FAN20G2786 Fragaria x ananassa HOM05D004099 ORTHO05D004777 4.6e-17 92.4 157 44.6
FAN15G2474 Fragaria x ananassa HOM05D004099 ORTHO05D004777 1.3e-16 90.9 157 43.9
FAN27G1673 Fragaria x ananassa HOM05D004099 ORTHO05D004777 1.3e-16 90.9 157 43.9
C09p07050 Brassica napus HOM05D004099 ORTHO05D004777 1.7e-16 90.5 144 42.4
Manes.03G004500 Manihot esculenta HOM05D004099 ORTHO05D004777 1.7e-16 90.5 174 41.4
Atru.chr7.2654 Acer truncatum HOM05D004099 ORTHO05D004777 5.1e-16 89.0 89 61.8
Sabra18G0015300 Salix brachista HOM05D004099 ORTHO05D004777 5.1e-16 89.0 150 43.3
arahy.Tifrunner.gnm1.ann1.DC2GX7 Arachis hypogaea HOM05D004099 ORTHO05D004777 8.6e-16 88.2 165 38.2
AT5G24890 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 1.1e-15 87.8 150 42.7
arahy.Tifrunner.gnm1.ann1.EP35YN Arachis hypogaea HOM05D004099 ORTHO05D004777 1.1e-15 87.8 169 37.9
BcaB04g19804 Brassica carinata HOM05D004099 ORTHO05D004777 1.1e-15 87.8 198 41.4
BcaB04g19805 Brassica carinata HOM05D004099 ORTHO05D004777 1.1e-15 87.8 198 41.4
Aa31LG11G4090 Aethionema arabicum HOM05D004099 ORTHO05D004777 1.5e-15 87.4 151 41.1
Manes.16G135100 Manihot esculenta HOM05D004099 ORTHO05D004777 1.5e-15 87.4 175 40.0
A09p06360 Brassica napus HOM05D004099 ORTHO05D004777 1.9e-15 87.0 94 55.3
AL6G36570 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 2.5e-15 86.7 85 58.8
BcaC04g23565 Brassica carinata HOM05D004099 ORTHO05D004777 2.5e-15 86.7 144 41.7
BolC9t53621H Brassica oleracea HOM05D004099 ORTHO05D004777 2.5e-15 86.7 144 41.7
CARHR188560 Cardamine hirsuta HOM05D004099 ORTHO05D004777 2.5e-15 86.7 85 58.8
BraA02t08969Z Brassica rapa HOM05D004099 ORTHO05D004777 3.3e-15 86.3 192 41.1
Sp2g22560 Schrenkiella parvula HOM05D004099 ORTHO05D004777 3.3e-15 86.3 206 37.9
MELO3C003623.2 Cucumis melo HOM05D004099 ORTHO05D004777 4.3e-15 85.9 141 45.4
CsaV3_2G031340 Cucumis sativus L. HOM05D004099 ORTHO05D004777 4.3e-15 85.9 82 61.0
FvH4_2g36700 Fragaria vesca HOM05D004099 ORTHO05D004777 4.3e-15 85.9 158 43.0
Potri.018G008200 Populus trichocarpa HOM05D004099 ORTHO05D004777 7.3e-15 85.1 242 40.1
Actinidia06428 Actinidia chinensis HOM05D004099 ORTHO05D004777 9.5e-15 84.7 143 44.1
arahy.Tifrunner.gnm1.ann1.4Y0EX5 Arachis hypogaea HOM05D004099 ORTHO05D004777 9.5e-15 84.7 92 55.4
BcaNung05898 Brassica carinata HOM05D004099 ORTHO05D004777 9.5e-15 84.7 188 38.3
C07p42870 Brassica napus HOM05D004099 ORTHO05D004777 9.5e-15 84.7 216 42.1
BolC7t44814H Brassica oleracea HOM05D004099 ORTHO05D004777 9.5e-15 84.7 216 42.1
CANSAT25G3311 Cannabis sativa HOM05D004099 ORTHO05D004777 9.5e-15 84.7 84 57.1
MELO3C011183.2 Cucumis melo HOM05D004099 ORTHO05D004777 9.5e-15 84.7 82 59.8
Carub.0006s2274 Capsella rubella HOM05D004099 ORTHO05D004777 1.2e-14 84.3 93 57.0
QL12p025350 Quercus lobata HOM05D004099 ORTHO05D004777 1.2e-14 84.3 94 55.3
BraA09t36281Z Brassica rapa HOM05D004099 ORTHO05D004777 2.1e-14 83.6 94 54.3
MD15G1107100 Malus domestica HOM05D004099 ORTHO05D004777 2.8e-14 83.2 86 58.1
PSO063G2706 Papaver somniferum HOM05D004099 ORTHO05D004777 2.8e-14 83.2 97 54.6
PSO170G2883 Papaver somniferum HOM05D004099 ORTHO05D004777 2.8e-14 83.2 97 54.6
arahy.Tifrunner.gnm1.ann1.HHIB1Q Arachis hypogaea HOM05D004099 ORTHO05D004777 3.6e-14 82.8 92 54.3
BolC2t12055H Brassica oleracea HOM05D004099 ORTHO05D004777 3.6e-14 82.8 195 40.5
ClCG05G026470 Citrullus lanatus HOM05D004099 ORTHO05D004777 4.7e-14 82.4 159 47.2
MD08G1127700 Malus domestica HOM05D004099 ORTHO05D004777 4.7e-14 82.4 89 58.4
Actinidia22257 Actinidia chinensis HOM05D004099 ORTHO05D004777 6.2e-14 82.0 86 52.3
CsaV3_3G047130 Cucumis sativus L. HOM05D004099 ORTHO05D004777 6.2e-14 82.0 85 55.3
Sed0004011 Sechium edule HOM05D004099 ORTHO05D004777 6.2e-14 82.0 82 59.8
BcaB07g29925 Brassica carinata HOM05D004099 ORTHO05D004777 8.1e-14 81.6 140 47.1
Medtr1g009640 Medicago truncatula HOM05D004099 ORTHO05D004777 8.1e-14 81.6 82 54.9
TPR.G34393 Trifolium pratense HOM05D004099 ORTHO05D004777 1.1e-13 81.3 88 54.5
Medtr3g108910 Medicago truncatula HOM05D004099 ORTHO05D004777 1.4e-13 80.9 96 52.1
BcaC03g17940 Brassica carinata HOM05D004099 ORTHO05D004777 1.8e-13 80.5 194 40.2
C02p60010 Brassica napus HOM05D004099 ORTHO05D004777 1.8e-13 80.5 194 40.2
CiPaw.07G211800 Carya illinoinensis HOM05D004099 ORTHO05D004777 2.3e-13 80.1 80 58.8
CSS0016285 Camellia sinensis var. sinensis HOM05D004099 ORTHO05D004777 3.1e-13 79.7 98 52.0
Psat0s1810g0040 Pisum sativum HOM05D004099 ORTHO05D004777 3.1e-13 79.7 88 54.5
TPR.G11970 Trifolium pratense HOM05D004099 ORTHO05D004777 3.1e-13 79.7 84 52.4
VMungo1309G2218 Vigna mungo HOM05D004099 ORTHO05D004777 3.1e-13 79.7 82 58.5
A02p40050 Brassica napus HOM05D004099 ORTHO05D004777 4.0e-13 79.3 192 40.6
Ca_15654_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 4.0e-13 79.3 85 55.3
Ca_15662_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 4.0e-13 79.3 85 55.3
Phvul.001G059700 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 4.0e-13 79.3 85 54.1
Phvul.009G101800 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 4.0e-13 79.3 84 57.1
VMungo0647G0898 Vigna mungo HOM05D004099 ORTHO05D004777 5.2e-13 79.0 85 55.3
GSVIVG01035514001 Vitis vinifera HOM05D000139 ORTHO05D003082 6.8e-13 78.6 114 46.5
A06p35670 Brassica napus HOM05D004099 ORTHO05D004777 1.2e-12 77.8 216 40.7
BraA06t26492Z Brassica rapa HOM05D004099 ORTHO05D004777 1.2e-12 77.8 216 40.7
Sc06g0000180 Simmondsia chinensis HOM05D004099 ORTHO05D004777 1.2e-12 77.8 86 57.0
Lalb_Chr22g0361221 Lupinus albus HOM05D004099 ORTHO05D004777 1.5e-12 77.4 87 48.3
TWI34G1482 Tripterygium wilfordii HOM05D004099 ORTHO05D004777 1.5e-12 77.4 191 45.0
Glyma.17G197700 Glycine max HOM05D004099 ORTHO05D004777 2.6e-12 76.6 88 53.4
Sed0009150 Sechium edule HOM05D004099 ORTHO05D004777 3.4e-12 76.3 82 54.9
Ciclev10009036m.g Citrus clementina HOM05D004099 ORTHO05D004777 4.4e-12 75.9 92 53.3
GSVIVG01012477001 Vitis vinifera HOM05D004099 ORTHO05D004777 5.8e-12 75.5 114 43.9
Prupe.1G459400 Prunus persica HOM05D004099 ORTHO05D004777 7.6e-12 75.1 91 53.8
CiPaw.08G020400 Carya illinoinensis HOM05D004099 ORTHO05D004777 9.9e-12 74.7 157 40.8
ClCG08G012630 Citrullus lanatus HOM05D004099 ORTHO05D004777 9.9e-12 74.7 78 55.1
Lj1g0009765 Lotus japonicus HOM05D004099 ORTHO05D004777 9.9e-12 74.7 174 37.4
Lalb_Chr23g0269151 Lupinus albus HOM05D004099 ORTHO05D004777 9.9e-12 74.7 96 52.1
HPP92_010785 Vanilla planifolia HOM05D004099 ORTHO05D004777 9.9e-12 74.7 89 52.8
Glyma.06G077200 Glycine max HOM05D004099 ORTHO05D004777 1.3e-11 74.3 85 56.5
Psat6g032840 Pisum sativum HOM05D004099 ORTHO05D004777 1.3e-11 74.3 148 37.2
Medtr1g045430 Medicago truncatula HOM05D004099 ORTHO05D004777 1.7e-11 73.9 109 43.1
Lalb_Chr11g0064161 Lupinus albus HOM05D004099 ORTHO05D004777 2.9e-11 73.2 104 49.0
PGR044G2369 Punica granatum HOM05D004099 ORTHO05D004777 6.4e-11 72.0 87 56.3
RcHm_v2.0_Chr6g0305061 Rosa chinensis HOM05D004099 ORTHO05D004777 8.4e-11 71.6 158 37.3
Ah.12g061250 Amaranthus hybridus HOM05D004099 ORTHO05D004777 1.1e-10 71.2 102 46.1
Glyma.04G076000 Glycine max HOM05D004099 ORTHO05D004777 1.1e-10 71.2 85 55.3
TWI63G1022 Tripterygium wilfordii HOM05D004099 ORTHO05D004777 1.9e-10 70.5 219 39.7
HPP92_017131 Vanilla planifolia HOM05D004099 ORTHO05D004777 4.1e-10 69.3 66 62.1
Peaxi162Scf00288g00911 Petunia axillaris HOM05D004099 ORTHO05D004777 5.4e-10 68.9 85 45.9
EL10Ac2g02414 Beta vulgaris HOM05D004099 ORTHO05D004777 2.7e-09 66.6 116 44.8
MBI16_g09343_MAGBIO Magnolia biondii HOM05D002359 ORTHO05D002394 4.6e-09 65.9 87 47.1
PGSC0003DMG400035805 Solanum tuberosum HOM05D004099 ORTHO05D004777 4.6e-09 65.9 77 51.9
Os08g0516900 Oryza sativa ssp. japonica HOM05D002359 ORTHO05D002394 6.0e-09 65.5 68 54.4
ATR0580G260 Amborella trichopoda HOM05D002359 ORTHO05D002394 7.8e-09 65.1 107 42.1
Potri.006G273100 Populus trichocarpa HOM05D004099 ORTHO05D004777 7.8e-09 65.1 274 35.8
ClCG08G009780 Citrullus lanatus HOM05D002359 ORTHO05D002394 2.3e-08 63.5 157 32.5
Zm00001eb174750 Zea mays HOM05D002359 ORTHO05D002394 3.0e-08 63.2 66 54.5
Aqoxy7G02919 Aquilegia oxysepala HOM05D002359 ORTHO05D002394 3.9e-08 62.8 84 48.8
CDE07G1514 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 3.9e-08 62.8 104 42.3
HPP92_010298 Vanilla planifolia HOM05D002359 ORTHO05D002394 3.9e-08 62.8 67 56.7
Oeu018566.1 Olea europaea HOM05D004099 ORTHO05D004777 6.6e-08 62.0 62 59.7
Haze_07997 Corylus avellana HOM05D004099 ORTHO05D004777 8.6e-08 61.6 75 53.3
Os09g0499000 Oryza sativa ssp. japonica HOM05D002359 ORTHO05D002394 8.6e-08 61.6 67 58.2
Nitab4.5_0000502g0140 Nicotiana tabacum HOM05D004099 ORTHO05D004777 1.1e-07 61.2 61 54.1
Solyc08g068970.3 Solanum lycopersicum HOM05D004099 ORTHO05D004777 1.1e-07 61.2 128 35.9
Haze_07991 Corylus avellana HOM05D004099 ORTHO05D004777 1.5e-07 60.8 75 53.3
CsaV3_6G031910 Cucumis sativus L. HOM05D002359 ORTHO05D002394 1.5e-07 60.8 135 35.6
Peaxi162Scf00288g00109 Petunia axillaris HOM05D004099 ORTHO05D004777 1.9e-07 60.5 65 49.2
Sopen08g022630 Solanum pennellii HOM05D004099 ORTHO05D004777 1.9e-07 60.5 128 35.9
MELO3C011491.2 Cucumis melo HOM05D002359 ORTHO05D002394 2.5e-07 60.1 135 35.6
Os06g0698748 Oryza sativa ssp. japonica HOM05D004099 ORTHO05D004777 2.5e-07 60.1 66 50.0
Zm00001eb317350 Zea mays HOM05D002359 ORTHO05D002394 2.5e-07 60.1 110 45.5
Zm00001eb035860 Zea mays HOM05D002359 ORTHO05D002394 4.3e-07 59.3 64 53.1
MSTRG.11808 Avicennia marina HOM05D004099 ORTHO05D004777 5.6e-07 58.9 99 41.4
QL11p000753 Quercus lobata HOM05D002359 ORTHO05D002394 7.3e-07 58.5 56 53.6
CDE06G0466 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 9.6e-07 58.2 105 37.1
HPP92_015829 Vanilla planifolia HOM05D002359 ORTHO05D002394 9.6e-07 58.2 66 54.5
Zm00001eb273070 Zea mays HOM05D004099 ORTHO05D002394 9.6e-07 58.2 52 55.8
Oeu040387.1 Olea europaea HOM05D004099 ORTHO05D004777 1.2e-06 57.8 92 43.5
SGA_v2.0_scaffold193G40664 Striga asiatica HOM05D004099 ORTHO05D004777 1.2e-06 57.8 107 36.4
CDE04G2528 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 1.6e-06 57.4 58 50.0
AL5G21890 Arabidopsis lyrata HOM05D002359 ORTHO05D002394 2.1e-06 57.0 96 36.5
ATR0598G330 Amborella trichopoda HOM05D002359 ORTHO05D002394 4.7e-06 55.8 117 35.9
CDE06G0156 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 8.1e-06 55.1 56 50.0


User provided reference genes

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