Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1320.4 891 100.0
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 0.0e+00 1300.0 891 99.0
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1087.8 888 89.2
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.3e-309 1066.2 888 86.3
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 9.1e-258 894.0 889 75.7
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 1.1e-255 887.1 891 77.1
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.9e-255 886.3 889 74.8
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.9e-255 886.3 889 74.8
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 1.5e-247 860.1 926 73.4
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.9e-247 859.8 891 73.1
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.2e-238 830.5 922 73.6
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 2.8e-238 829.3 890 72.8
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 2.3e-232 809.7 924 72.4
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 6.6e-232 808.1 923 69.3
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 3.3e-231 805.8 924 70.9
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 9.5e-231 804.3 930 71.2
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 1.2e-230 803.9 921 70.9
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.1e-229 800.8 919 72.5
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 1.8e-229 800.0 919 69.4
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 7.5e-228 794.7 926 70.8
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 4.1e-226 788.9 915 71.4
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 5.4e-226 788.5 915 71.4
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-223 780.8 909 71.0
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.5e-223 780.4 921 70.9
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.5e-223 780.4 924 70.5
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.8e-197 693.7 927 62.6
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 2.6e-172 610.1 921 54.4
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 5.0e-171 605.9 904 57.1
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 6.1e-169 599.0 898 58.8
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 1.0e-168 598.2 897 56.4
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.0e-167 594.0 890 57.4
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.5e-167 593.6 897 55.7
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.3e-166 591.3 902 54.9
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.1e-165 588.2 916 52.2
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.2e-164 584.7 896 58.9
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 4.5e-164 582.8 889 59.7
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.0e-163 581.6 879 59.5
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.7e-163 580.9 906 58.8
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.7e-163 580.9 894 52.9
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 1.1e-162 578.2 904 54.6
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 4.2e-162 576.2 887 58.1
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 5.5e-162 575.9 867 59.6
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 2.1e-161 573.9 801 62.8
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 6.1e-161 572.4 889 59.4
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 7.9e-161 572.0 895 57.2
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 1.0e-160 571.6 804 60.4
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.4e-160 571.2 890 57.5
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 3.9e-160 569.7 906 58.2
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 5.1e-160 569.3 888 60.4
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 5.1e-160 569.3 807 61.5
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 8.8e-160 568.5 908 58.5
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.1e-159 568.2 887 58.4
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 1.1e-159 568.2 892 59.5
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 2.0e-159 567.4 877 50.4
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 7.4e-159 565.5 880 58.6
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 7.4e-159 565.5 807 59.0
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.3e-158 564.7 807 59.0
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 2.8e-158 563.5 914 56.9
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 4.8e-158 562.8 892 58.9
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.1e-157 561.6 890 53.6
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 5.3e-157 559.3 911 58.0
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 2.6e-156 557.0 878 56.4
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 7.7e-156 555.4 890 55.7
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.0e-155 555.1 905 57.6
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 5.0e-155 552.7 890 57.0
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 5.0e-155 552.7 889 52.2
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 5.0e-155 552.7 896 57.7
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 6.5e-155 552.4 882 58.0
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 1.9e-154 550.8 905 56.7
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.2e-154 550.1 905 56.6
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 3.2e-154 550.1 916 56.1
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.2e-153 548.1 805 62.5
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.6e-153 546.6 905 56.4
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 3.6e-153 546.6 804 60.6
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 6.1e-153 545.8 905 54.9
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 3.0e-152 543.5 903 56.0
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 4.0e-152 543.1 853 58.4
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 5.2e-152 542.7 881 58.1
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.1e-151 541.6 890 56.0
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 2.0e-151 540.8 903 57.5
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 3.3e-151 540.0 804 61.6
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 5.7e-151 539.3 868 58.6
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 5.7e-151 539.3 895 55.8
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 5.7e-151 539.3 843 56.5
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 7.4e-151 538.9 887 57.7
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 9.7e-151 538.5 908 56.7
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.3e-150 538.1 906 57.4
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 1.3e-150 538.1 800 59.0
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 2.2e-150 537.3 874 52.9
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 2.8e-150 537.0 878 57.6
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 3.7e-150 536.6 904 54.9
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 6.3e-150 535.8 808 61.8
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.1e-149 535.0 891 58.2
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 1.4e-149 534.6 887 56.7
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.4e-149 534.6 889 59.2
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 3.1e-149 533.5 806 59.7
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 9.1e-149 531.9 902 55.3
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.6e-148 531.2 889 57.9
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.6e-148 530.4 889 57.9
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.5e-148 529.6 905 55.1
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.0e-147 528.5 799 60.1
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 6.5e-147 525.8 906 54.9
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.5e-146 524.6 901 55.7
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 1.5e-146 524.6 798 60.5
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.2e-145 521.5 893 56.7
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.7e-145 520.4 875 57.9
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 2.7e-145 520.4 880 50.6
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 4.7e-145 519.6 952 50.9
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 2.3e-144 517.3 879 57.7
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.0e-144 516.9 877 56.2
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 6.8e-144 515.8 780 61.3
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 2.6e-143 513.8 806 59.1
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.6e-143 513.8 741 62.3
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 4.8e-142 509.6 802 57.4
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 6.3e-142 509.2 877 58.3
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 8.3e-142 508.8 897 50.4
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.4e-141 507.3 889 54.9
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 4.1e-141 506.5 764 59.6
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 5.4e-141 506.1 800 57.6
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 9.1e-141 505.4 886 50.5
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 2.0e-140 504.2 883 50.2
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 2.0e-140 504.2 807 54.2
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 1.0e-139 501.9 906 54.0
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 1.7e-139 501.1 806 58.9
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.5e-138 498.0 869 55.9
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 2.5e-138 497.3 809 59.6
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 9.4e-138 495.4 879 51.8
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 9.4e-138 495.4 819 53.2
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 1.8e-136 491.1 874 48.7
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.4e-135 486.9 797 56.7
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 5.7e-135 486.1 829 52.8
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.4e-128 464.9 879 54.3
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 5.6e-122 443.0 785 52.0
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 7.3e-122 442.6 815 54.4
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 5.2e-120 436.4 795 46.9
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 2.6e-119 434.1 684 65.6
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 3.7e-118 430.3 808 54.1
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.7e-116 424.1 683 57.7
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.1e-114 418.7 869 52.1
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 6.2e-113 412.9 880 47.0
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 4.4e-111 406.8 782 45.8
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 6.4e-110 402.9 840 46.0
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.5e-106 391.0 743 55.0
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 7.3e-106 389.4 730 53.7
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 1.1e-98 365.5 327 59.9
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 5.6e-98 363.2 887 43.6
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 4.7e-97 360.1 435 55.4
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.6e-95 354.4 897 42.3
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.9e-90 338.2 796 43.1
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 9.6e-90 335.9 648 61.0
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.5e-87 328.6 845 47.5
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.4e-85 322.0 987 39.7
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.8e-81 307.0 675 48.1
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 1.7e-78 298.5 926 41.3
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.4e-77 295.4 644 62.0
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.2e-76 292.4 747 43.8
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 2.8e-73 281.2 648 49.1
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 6.7e-67 260.0 521 42.2
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.3e-62 245.7 166 72.9
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 1.9e-61 241.9 271 59.4
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.6e-60 237.3 396 50.0
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 1.8e-56 225.3 312 55.1
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 2.6e-55 221.5 492 41.3
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 5.5e-53 213.8 607 47.8
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.9e-45 188.7 221 48.9
BcaC01g01003 Brassica carinata HOM05D003722 ORTHO05D004589 2.6e-39 168.3 106 89.6
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.1e-32 144.8 199 43.7
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 9.1e-32 143.3 311 58.5
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.7e-26 124.0 200 42.0
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 1.3e-25 122.9 86 69.8
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 4.8e-25 120.9 71 78.9
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.4e-24 119.4 120 55.8
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 9.8e-18 96.7 103 46.6
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.7e-14 85.9 103 47.6
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.3e-09 69.7 61 50.8
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 1.7e-09 69.3 190 30.5
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 4.9e-09 67.8 239 72.4


User provided reference genes

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