Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1286.6 858 100.0
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 0.0e+00 1146.0 878 89.9
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 0.0e+00 1146.0 878 89.9
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1142.5 878 90.3
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 0.0e+00 1132.9 879 87.9
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.3e-282 976.5 875 82.7
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 7.9e-259 897.5 895 78.3
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 4.4e-249 865.1 895 76.1
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 2.0e-238 829.7 890 72.8
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.0e-234 817.4 890 72.4
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 1.0e-221 774.2 887 73.1
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 5.4e-215 751.9 887 70.1
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 1.3e-213 747.3 881 71.3
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 1.9e-212 743.4 881 69.7
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 7.3e-212 741.5 893 71.0
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 4.0e-210 735.7 896 70.8
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 1.5e-209 733.8 874 71.1
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 5.8e-209 731.9 895 70.7
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.7e-208 730.3 896 70.9
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 2.9e-208 729.6 908 70.0
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 2.4e-207 726.5 888 71.1
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 7.8e-206 721.5 893 69.5
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 2.3e-205 719.9 896 68.8
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 2.5e-204 716.5 887 70.3
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.5e-196 690.6 890 67.4
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.8e-181 640.6 891 61.6
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 5.8e-169 599.0 925 56.3
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 1.0e-168 598.2 791 57.9
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 1.3e-168 597.8 903 58.1
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 6.5e-168 595.5 863 59.2
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 2.1e-166 590.5 908 55.5
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.7e-166 590.1 888 56.5
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 1.6e-163 580.9 888 55.4
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 3.7e-163 579.7 806 62.9
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 6.3e-163 578.9 792 64.5
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.2e-160 570.5 896 56.9
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 6.5e-160 568.9 902 56.0
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.1e-159 568.2 888 58.4
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.9e-159 567.4 871 59.5
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.9e-159 567.4 893 55.8
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 2.5e-159 567.0 805 62.9
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.2e-158 564.7 888 59.1
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 4.6e-158 562.8 798 63.4
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 1.3e-157 561.2 800 61.9
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 1.3e-157 561.2 871 59.0
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 1.5e-156 557.8 744 58.9
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 2.2e-155 553.9 845 61.3
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 2.2e-155 553.9 860 58.4
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 8.2e-155 552.0 808 61.5
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.1e-154 550.1 806 61.9
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 5.3e-154 549.3 804 63.1
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.5e-153 547.7 786 57.9
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 2.6e-153 547.0 806 60.9
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 1.0e-152 545.0 901 56.7
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.3e-152 544.7 804 62.3
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.7e-152 544.3 791 58.7
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.7e-152 544.3 901 48.3
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.7e-152 544.3 804 62.8
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 2.9e-152 543.5 863 58.2
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.9e-152 543.5 805 57.0
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.9e-151 540.8 805 61.1
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 2.5e-151 540.4 725 64.3
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 3.2e-151 540.0 823 58.3
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 3.2e-151 540.0 881 57.2
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.5e-151 539.3 804 59.8
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 9.4e-151 538.5 856 60.6
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 9.4e-151 538.5 866 59.1
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.2e-150 538.1 890 57.4
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 1.2e-150 538.1 890 57.1
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 2.7e-150 537.0 806 55.7
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 4.6e-150 536.2 838 61.0
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 6.1e-150 535.8 892 56.6
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 7.9e-150 535.4 892 57.1
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 7.9e-150 535.4 875 57.3
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.4e-149 534.6 859 55.8
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.8e-149 534.3 890 57.0
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 2.3e-149 533.9 859 56.6
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.3e-149 533.9 804 62.7
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 3.0e-149 533.5 806 62.2
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 3.9e-149 533.1 862 54.4
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.9e-149 533.1 804 62.7
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 6.7e-149 532.3 805 61.9
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.5e-148 531.2 794 62.5
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.6e-148 530.4 842 57.1
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 4.4e-148 529.6 867 54.3
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 9.7e-148 528.5 899 56.5
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.3e-147 528.1 806 60.5
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.3e-147 528.1 892 56.1
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.3e-147 528.1 794 55.5
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 2.2e-147 527.3 890 56.4
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 2.8e-147 526.9 854 59.3
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 3.7e-147 526.6 805 61.1
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 3.7e-147 526.6 959 52.0
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 4.8e-147 526.2 800 60.0
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 6.3e-147 525.8 742 61.1
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 8.2e-147 525.4 806 60.5
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 6.9e-146 522.3 804 61.8
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.2e-145 521.5 804 62.6
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.2e-145 521.5 804 59.0
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 2.0e-145 520.8 806 59.1
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 4.5e-145 519.6 895 56.6
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 7.7e-145 518.8 795 60.5
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 7.7e-145 518.8 806 59.9
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 7.7e-145 518.8 874 57.4
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 8.5e-144 515.4 871 58.8
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 8.5e-144 515.4 806 59.2
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 4.2e-143 513.1 792 58.8
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 5.5e-143 512.7 806 59.9
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 7.2e-143 512.3 803 60.4
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 9.4e-143 511.9 840 56.1
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 1.8e-141 507.7 804 59.3
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 3.0e-141 506.9 893 55.7
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 3.9e-141 506.5 806 61.0
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 5.2e-141 506.1 801 58.9
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 8.8e-141 505.4 860 59.2
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 2.2e-139 500.7 877 56.0
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 2.8e-139 500.4 806 59.1
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 4.1e-138 496.5 883 55.2
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 9.1e-138 495.4 780 60.8
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.6e-137 494.6 860 55.6
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 5.9e-137 492.7 806 60.7
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 1.0e-136 491.9 796 55.4
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 1.3e-136 491.5 764 59.4
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 5.5e-135 486.1 823 56.7
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 5.5e-135 486.1 829 53.4
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.3e-133 480.7 818 53.7
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.2e-132 478.4 851 56.1
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.0e-132 477.6 819 54.3
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 6.3e-131 472.6 801 56.9
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.1e-130 470.3 796 56.9
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 3.5e-129 466.8 894 51.7
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.1e-126 457.6 685 61.9
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 8.8e-125 452.2 685 65.0
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.7e-120 438.0 817 54.7
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.1e-118 431.0 804 55.1
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 5.2e-117 426.4 804 54.1
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 3.7e-115 420.2 731 48.6
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 1.4e-114 418.3 775 52.6
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 7.0e-114 416.0 794 56.8
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.3e-109 401.0 776 45.2
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 4.0e-109 400.2 863 45.7
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.2e-107 394.4 725 56.1
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 1.8e-106 391.3 638 60.8
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.9e-99 367.5 889 45.3
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.2e-98 364.0 897 45.3
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 5.4e-98 363.2 837 41.9
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.4e-93 348.6 651 62.1
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.3e-91 342.0 654 50.3
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 6.6e-88 329.7 299 59.2
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-87 328.6 455 51.4
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.9e-87 328.2 786 45.4
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 2.5e-87 327.8 646 55.6
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.1e-85 322.4 646 62.8
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.7e-83 315.1 845 47.3
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.1e-81 308.1 587 51.3
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 2.4e-74 284.6 435 47.8
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.7e-73 281.2 906 38.5
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 6.2e-70 270.0 928 42.3
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 7.4e-63 246.5 399 47.1
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 3.4e-60 237.7 263 59.7
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 7.9e-57 226.5 306 53.9
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 1.1e-55 222.6 308 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 1.5e-55 222.2 606 49.5
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.1e-53 216.1 205 58.5
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 5.9e-44 183.7 311 56.9
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 5.0e-43 180.6 222 48.6
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 1.1e-26 126.3 86 73.3
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.2e-25 122.9 83 72.3
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.3e-22 112.8 119 54.6
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 7.7e-20 103.6 205 38.0
BcaC01g01003 Brassica carinata HOM05D003722 ORTHO05D004589 1.2e-15 89.7 107 62.6
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 7.5e-15 87.0 66 66.7
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 1.6e-12 79.3 236 59.7
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 2.7e-12 78.6 178 33.7
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.9e-12 77.4 170 34.7
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 4.4e-07 61.2 133 30.8


User provided reference genes

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