Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 1.3e-174 616.3 309 100.0
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 1.3e-174 616.3 309 100.0
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 1.1e-120 437.2 312 76.0
BcaC01g00896 Brassica carinata HOM05D008776 ORTHO05D005587 3.0e-107 392.5 230 89.6
C03p85680 Brassica napus HOM05D008776 ORTHO05D005587 4.2e-101 372.1 194 96.4
BolC3t20854H Brassica oleracea HOM05D008776 ORTHO05D005587 4.2e-101 372.1 194 96.4
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 1.2e-58 231.1 325 48.9
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 2.2e-54 216.9 326 46.9
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 5.7e-42 175.6 302 45.4
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 8.3e-41 171.8 307 43.0
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 3.2e-40 169.9 299 46.8
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 4.1e-40 169.5 298 45.0
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 7.8e-39 165.2 305 43.6
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 5.0e-38 162.5 292 43.2
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 1.5e-37 161.0 297 44.8
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 1.5e-37 161.0 297 44.8
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 3.3e-37 159.8 305 43.0
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.4e-35 154.5 304 41.8
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.4e-35 154.5 304 41.8
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 4.0e-35 152.9 297 42.1
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 7.5e-34 148.7 276 42.0
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 4.9e-33 146.0 306 39.2
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 4.9e-33 146.0 306 39.2
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 4.9e-33 146.0 306 39.2
BcaC01g00894 Brassica carinata HOM05D000394 ORTHO05D000299 1.9e-32 144.1 70 95.7
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 9.2e-32 141.7 324 37.0
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 2.7e-31 140.2 305 39.7
CARHR242860 Cardamine hirsuta HOM05D008776 ORTHO05D005587 2.7e-31 140.2 128 62.5
AL7G16670 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 1.0e-30 138.3 152 56.6
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 1.3e-30 137.9 307 39.4
BcaC01g00895 Brassica carinata HOM05D008776 ORTHO05D005587 3.0e-30 136.7 66 95.5
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.1e-24 118.2 197 44.2
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.2e-23 114.8 294 36.4
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 4.9e-17 92.8 344 29.4
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 3.2e-16 90.1 331 31.1
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 3.5e-15 86.7 342 29.5
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 6.0e-15 85.9 345 29.3
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 3.9e-14 83.2 345 28.4
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 3.3e-13 80.1 346 28.3
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 1.2e-12 78.2 331 29.0
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 1.6e-12 77.8 333 29.1
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 2.8e-12 77.0 282 29.1
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 3.6e-12 76.6 328 28.4
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 3.6e-12 76.6 334 29.6
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 2.4e-11 73.9 298 28.9
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 3.1e-11 73.6 357 27.7
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 4.0e-11 73.2 353 27.8
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 5.2e-11 72.8 341 28.7
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 5.2e-11 72.8 324 29.3
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 8.9e-11 72.0 338 26.3
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 1.2e-10 71.6 326 28.8
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 2.0e-10 70.9 341 28.4
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 2.6e-10 70.5 274 29.2
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 3.4e-10 70.1 338 26.3
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 5.8e-10 69.3 367 26.4
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 7.6e-10 68.9 314 28.3
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 7.6e-10 68.9 243 28.0
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 9.9e-10 68.6 329 28.3
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 9.9e-10 68.6 308 28.6
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 1.3e-09 68.2 244 28.7
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.2e-09 67.4 341 28.2
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 2.2e-09 67.4 201 33.3
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 2.9e-09 67.0 271 29.2
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 6.4e-09 65.9 324 30.2
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 8.4e-09 65.5 129 42.6
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.1e-08 65.1 336 28.9
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 1.9e-08 64.3 295 29.5
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 2.4e-08 63.9 282 30.5
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 3.2e-08 63.5 214 29.0
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 7.1e-08 62.4 355 24.8
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 7.1e-08 62.4 205 30.2
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 7.1e-08 62.4 244 28.7
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 1.2e-07 61.6 269 31.2
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 2.1e-07 60.8 279 26.2
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 2.7e-07 60.5 314 27.7
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.5e-07 60.1 242 30.6
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 4.6e-07 59.7 333 25.2
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 6.0e-07 59.3 276 27.9
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 7.8e-07 58.9 191 32.5
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.0e-06 58.5 243 27.2
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 1.0e-06 58.5 223 31.4
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.7e-06 57.8 286 28.7
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 2.3e-06 57.4 254 29.5
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 2.3e-06 57.4 290 29.0
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 3.9e-06 56.6 283 26.5
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 6.6e-06 55.8 230 27.4
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 6.6e-06 55.8 254 25.2
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 8.7e-06 55.5 306 26.5


User provided reference genes

Program Settings