Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 1.1e-136 490.0 247 100.0
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 1.1e-136 490.0 247 100.0
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 2.5e-136 488.8 247 99.6
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 2.5e-136 488.8 247 99.6
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 3.2e-136 488.4 247 99.6
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 3.5e-135 485.0 247 99.2
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 1.8e-134 482.6 247 98.4
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 3.9e-134 481.5 247 98.4
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 3.9e-134 481.5 247 98.4
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 1.9e-133 479.2 247 98.0
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 2.5e-133 478.8 247 97.2
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 5.7e-133 477.6 247 97.6
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 1.3e-132 476.5 247 97.6
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.4e-131 473.0 248 96.8
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 3.1e-131 471.9 247 96.0
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 6.9e-131 470.7 248 96.8
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 9.0e-131 470.3 247 95.5
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 1.0e-129 466.8 247 94.7
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 1.1e-128 463.4 247 94.3
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 1.1e-128 463.4 247 94.3
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 1.1e-128 463.4 247 94.3
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 1.1e-128 463.4 247 94.3
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 2.5e-128 462.2 247 93.9
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 4.2e-128 461.5 247 93.9
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.2e-127 459.9 247 93.5
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 6.1e-127 457.6 247 93.5
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 1.3e-126 456.4 247 92.7
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 5.1e-126 454.5 245 92.7
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 5.1e-126 454.5 247 92.3
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.5e-125 453.0 247 92.7
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.5e-125 453.0 247 91.9
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 1.9e-125 452.6 246 91.9
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 3.3e-125 451.8 247 91.1
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 5.7e-125 451.1 247 92.3
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 5.7e-125 451.1 247 90.7
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 90.7
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 1.3e-124 449.9 247 90.7
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 1.3e-124 449.9 247 90.7
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 1.6e-124 449.5 247 90.7
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.6e-124 449.5 247 90.7
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 4.8e-124 448.0 245 89.8
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 90.7
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 90.3
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 89.9
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 91.5
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.1e-123 446.8 252 90.1
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.1e-123 446.8 247 90.3
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.1e-123 446.8 247 90.3
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 91.1
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 1.8e-123 446.0 247 91.1
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.8e-123 446.0 247 90.3
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.8e-123 446.0 247 90.3
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.8e-123 446.0 247 90.3
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.8e-123 446.0 246 89.8
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 2.4e-123 445.7 247 89.9
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 5.3e-123 444.5 247 89.9
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 5.3e-123 444.5 247 90.3
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 5.3e-123 444.5 247 88.7
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 89.5
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 6.9e-123 444.1 244 90.6
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 9.0e-123 443.7 247 90.3
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 9.0e-123 443.7 247 90.3
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 9.0e-123 443.7 245 90.6
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 9.0e-123 443.7 247 89.1
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.5e-122 443.0 247 89.9
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 2.0e-122 442.6 247 89.5
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 2.0e-122 442.6 247 89.9
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.6e-122 442.2 247 90.3
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.6e-122 442.2 247 90.3
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 3.4e-122 441.8 247 89.5
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 3.4e-122 441.8 247 89.1
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 3.4e-122 441.8 247 89.1
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.1
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.1
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.9
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 88.7
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.5
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 4.5e-122 441.4 246 89.4
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 5.9e-122 441.0 247 89.5
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 5.9e-122 441.0 247 89.5
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 7.7e-122 440.7 246 89.4
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 7.7e-122 440.7 247 89.1
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 1.0e-121 440.3 247 89.1
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 1.0e-121 440.3 247 88.3
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.0e-121 440.3 247 89.9
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.0e-121 440.3 247 88.7
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 1.3e-121 439.9 247 88.7
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 1.3e-121 439.9 245 90.6
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 1.7e-121 439.5 248 89.5
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 1.7e-121 439.5 243 88.9
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 2.2e-121 439.1 247 88.7
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 2.2e-121 439.1 243 88.9
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 2.9e-121 438.7 243 88.9
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 89.5
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 6.5e-121 437.6 245 88.6
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 6.5e-121 437.6 245 88.2
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 87.4
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 88.7
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 6.5e-121 437.6 248 89.1
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 6.5e-121 437.6 248 89.1
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 8.5e-121 437.2 247 87.4
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 1.1e-120 436.8 248 88.7
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 1.1e-120 436.8 248 88.7
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 1.1e-120 436.8 247 87.4
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 1.4e-120 436.4 246 87.4
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 1.4e-120 436.4 248 89.1
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 2.5e-120 435.6 243 88.1
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 4.2e-120 434.9 248 87.9
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 4.2e-120 434.9 244 88.1
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 7.2e-120 434.1 245 88.2
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 9.4e-120 433.7 247 86.6
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 9.4e-120 433.7 248 87.1
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 1.2e-119 433.3 248 89.5
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 3.6e-119 431.8 269 83.3
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 6.1e-119 431.0 248 87.1
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 2.0e-117 426.0 248 87.9
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 3.3e-117 425.2 246 87.4
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 9.7e-117 423.7 246 87.0
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 1.7e-116 422.9 248 85.1
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 2.2e-116 422.5 260 82.7
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 2.8e-116 422.2 286 78.0
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 2.8e-116 422.2 248 85.9
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 6.9e-115 417.5 234 89.7
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 1.0e-113 413.7 247 85.0
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 1.7e-113 412.9 290 74.1
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 7.2e-112 407.5 250 82.0
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 5.1e-110 401.4 252 79.4
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 6.7e-110 401.0 334 65.9
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 5.7e-109 397.9 250 79.6
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 7.4e-109 397.5 248 79.4
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 1.1e-107 393.7 214 91.1
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 4.1e-107 391.7 251 78.1
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 9.1e-107 390.6 251 76.9
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.5e-106 389.8 252 76.2
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 1.2e-103 380.2 266 75.2
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.8e-102 376.3 211 87.2
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.8e-102 376.3 211 87.2
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 2.6e-101 372.5 223 83.9
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 5.7e-101 371.3 213 87.3
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 4.1e-99 365.2 359 58.2
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 7.0e-91 337.8 245 71.4
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 3.8e-89 332.0 198 88.4
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 5.5e-88 328.2 247 71.7
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 5.7e-85 318.2 245 70.2
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 2.0e-82 309.7 179 87.7
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 4.2e-80 302.0 172 90.1
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 2.1e-79 299.7 172 89.5
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 5.2e-78 295.0 168 86.3
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.2e-77 293.9 165 88.5
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.2e-69 267.3 280 54.3
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 4.0e-62 242.3 241 49.8
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 5.1e-57 225.3 138 81.2
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 1.2e-47 194.1 232 44.0
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.2e-47 194.1 247 51.8
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 8.1e-47 191.4 247 43.7
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 7.6e-45 184.9 102 88.2
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 1.3e-44 184.1 208 55.8
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.9e-40 170.2 97 86.6
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 4.6e-34 149.1 165 53.9
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.9e-32 143.7 87 83.9
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 5.6e-32 142.1 141 56.7
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 7.3e-32 141.7 82 90.2
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 6.9e-30 135.2 83 81.9
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 2.0e-29 133.7 212 46.2
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 2.0e-29 133.7 82 81.7
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 2.1e-26 123.6 232 37.1
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 1.6e-18 97.4 99 48.5
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 1.1e-16 91.3 57 82.5
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 3.3e-16 89.7 51 82.4
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 1.1e-14 84.7 74 66.2
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.4e-14 84.3 51 84.3
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 4.1e-14 82.8 79 59.5
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 1.5e-13 80.9 52 84.6
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 4.5e-13 79.3 47 74.5
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 8.4e-12 75.1 112 49.1
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 7.2e-11 72.0 38 86.8
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 7.2e-11 72.0 90 53.3
A05p11440 Brassica napus HOM05D003856 ORTHO05D004547 3.0e-09 66.6 36 86.1
BraA05t20093Z Brassica rapa HOM05D003856 ORTHO05D004547 3.0e-09 66.6 36 86.1
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 3.9e-09 66.2 45 77.8
C04p14930 Brassica napus HOM05D003856 ORTHO05D004547 8.7e-09 65.1 36 83.3
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 4.3e-08 62.8 98 48.0
vmacro22601 Vaccinium macrocarpon HOM05D003856 ORTHO05D426869 2.8e-07 60.1 90 48.9


User provided reference genes

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