Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-108 396.4 206 100.0
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 1.7e-98 362.8 206 94.7
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 3.9e-95 351.7 204 91.2
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 5.1e-95 351.3 204 90.7
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 1.4e-81 306.6 179 89.9
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 1.9e-78 296.2 206 77.7
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 7.4e-78 294.3 206 77.2
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 1.4e-76 290.0 206 77.2
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 1.4e-73 280.0 182 83.0
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.9e-73 279.6 207 75.4
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 2.5e-73 279.3 206 75.2
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 5.5e-73 278.1 207 74.9
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 5.5e-73 278.1 207 74.9
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 1.0e-71 273.9 207 73.9
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 5.1e-71 271.6 207 73.4
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 8.7e-71 270.8 207 73.9
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 1.3e-69 266.9 211 73.9
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 1.6e-69 266.5 203 72.4
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 2.2e-69 266.2 202 72.8
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 3.7e-69 265.4 202 72.3
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.1e-68 263.8 202 72.8
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.1e-68 263.8 202 72.8
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 5.3e-68 261.5 202 72.3
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 7.7e-59 231.1 180 71.1
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 8.8e-47 191.0 209 56.9
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.5e-38 163.7 199 54.8
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 5.9e-35 151.8 208 50.0
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.0e-18 97.8 203 42.4
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 3.0e-18 96.3 189 41.3
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 3.0e-18 96.3 196 41.8
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 1.9e-17 93.6 203 38.9
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.9e-17 93.6 192 40.1
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 2.1e-16 90.1 202 44.6
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 6.2e-16 88.6 200 40.0
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.4e-15 87.4 202 41.6
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.8e-15 87.0 201 40.3
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 3.1e-15 86.3 186 39.8
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 3.1e-15 86.3 180 41.1
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.1e-15 86.3 184 41.8
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 8.9e-15 84.7 183 37.7
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 8.9e-15 84.7 199 37.2
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.2e-14 84.3 203 36.9
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.2e-14 84.3 193 40.4
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.5e-14 84.0 192 35.4
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 2.0e-14 83.6 186 36.6
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 2.0e-14 83.6 194 39.2
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 2.0e-14 83.6 201 37.8
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 2.6e-14 83.2 202 40.1
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.6e-14 83.2 184 41.3
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.6e-14 83.2 195 40.5
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.6e-14 83.2 191 39.8
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 2.6e-14 83.2 182 42.3
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.6e-14 83.2 192 39.1
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 3.4e-14 82.8 190 40.5
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.4e-14 82.4 159 38.4
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 5.8e-14 82.0 194 39.2
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 7.5e-14 81.6 184 40.2
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 9.8e-14 81.3 188 40.4
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 1.3e-13 80.9 186 41.4
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.3e-13 80.9 188 38.3
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.7e-13 80.5 187 37.4
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 2.2e-13 80.1 195 36.9
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 2.2e-13 80.1 194 40.2
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 2.2e-13 80.1 180 38.9
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 2.9e-13 79.7 189 40.7
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 3.7e-13 79.3 208 37.0
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 8.3e-13 78.2 188 38.3
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 1.1e-12 77.8 151 41.7
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.1e-12 77.8 189 39.2
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.1e-12 77.8 194 38.1
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.4e-12 77.4 191 37.7
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 1.4e-12 77.4 187 39.0
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.4e-12 77.4 156 42.9
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 2.4e-12 76.6 190 38.9
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.4e-12 76.6 184 39.7
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.4e-12 76.6 188 39.4
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 4.1e-12 75.9 195 40.0
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 4.1e-12 75.9 187 37.4
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 4.1e-12 75.9 201 36.8
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 7.0e-12 75.1 187 43.9
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.2e-11 74.3 198 39.9
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 2.0e-11 73.6 199 32.7
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.0e-11 73.6 188 37.8
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 2.7e-11 73.2 151 40.4
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 2.7e-11 73.2 201 38.3
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 2.7e-11 73.2 183 39.9
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 3.5e-11 72.8 183 37.2
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 4.6e-11 72.4 183 37.2
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 4.6e-11 72.4 206 34.5
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 7.8e-11 71.6 181 37.6
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.0e-10 71.2 156 36.5
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.0e-10 71.2 201 35.8
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.0e-10 71.2 191 34.0
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 1.3e-10 70.9 185 36.8
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 2.3e-10 70.1 180 35.6
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 2.3e-10 70.1 180 35.6
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 3.0e-10 69.7 208 36.5
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 3.0e-10 69.7 167 34.7
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.0e-10 69.7 188 35.1
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.0e-10 69.7 188 35.1
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 3.0e-10 69.7 192 38.5
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 5.0e-10 68.9 184 35.3
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 6.6e-10 68.6 176 37.5
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 8.6e-10 68.2 152 39.5
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 1.5e-09 67.4 182 36.3
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.5e-09 67.4 190 33.7
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.9e-09 67.0 185 35.1
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.5e-09 66.6 193 36.3
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 5.6e-09 65.5 157 40.1
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 7.3e-09 65.1 187 34.8
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 7.3e-09 65.1 187 36.4
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.3e-09 65.1 184 33.7
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 9.5e-09 64.7 190 34.2
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 9.5e-09 64.7 179 35.8
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 9.5e-09 64.7 187 36.9
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 1.6e-08 63.9 190 34.7
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.1e-08 63.5 184 35.9
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 2.8e-08 63.2 192 33.9
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 4.7e-08 62.4 153 35.3
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 6.2e-08 62.0 150 39.3
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.2e-08 62.0 188 35.6
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 8.1e-08 61.6 192 32.8
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 8.1e-08 61.6 138 41.3
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.8e-07 60.5 52 59.6
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 3.1e-07 59.7 201 34.3
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 3.1e-07 59.7 197 32.5
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 5.2e-07 58.9 192 33.9
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 2.0e-06 57.0 182 33.5
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 2.6e-06 56.6 66 50.0
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 7.5e-06 55.1 146 37.7
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 7.5e-06 55.1 178 33.1
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 9.9e-06 54.7 168 36.9


User provided reference genes

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