Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 1.6e-250 869.0 453 100.0
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 1.6e-250 869.0 453 100.0
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 3.1e-222 775.0 451 91.1
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 6.1e-218 760.8 438 91.3
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 3.6e-210 734.9 446 88.3
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 3.4e-184 648.7 467 78.6
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 9.9e-168 594.0 466 72.7
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 1.1e-163 580.5 461 72.5
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 3.7e-162 575.5 464 71.6
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 8.1e-162 574.3 461 72.2
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 4.5e-160 568.5 461 71.8
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 6.4e-159 564.7 469 70.1
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 2.7e-157 559.3 493 67.3
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 6.7e-148 528.1 475 68.2
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 5.7e-139 498.4 463 65.7
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 8.2e-138 494.6 469 64.8
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 1.2e-136 490.7 472 64.4
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 1.9e-126 456.8 494 58.9
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 3.8e-119 432.6 459 58.4
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 6.7e-116 421.8 455 58.5
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 2.9e-111 406.4 403 57.8
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 5.5e-110 402.1 375 60.0
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 7.2e-110 401.7 453 54.1
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 7.2e-110 401.7 384 57.8
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 2.7e-109 399.8 381 59.1
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 1.0e-108 397.9 369 61.2
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 1.4e-108 397.5 449 54.8
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 1.5e-107 394.0 390 56.7
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 1.5e-107 394.0 399 57.6
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 3.4e-107 392.9 393 58.0
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 4.4e-107 392.5 443 53.3
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 4.4e-107 392.5 406 55.7
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 9.8e-107 391.3 407 55.8
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.7e-106 390.6 395 56.2
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 1.7e-106 390.6 445 53.5
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 3.7e-106 389.4 400 57.5
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 4.8e-106 389.0 362 59.4
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 6.3e-106 388.7 436 53.0
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 6.3e-106 388.7 380 57.6
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 8.3e-106 388.3 387 57.6
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 1.4e-105 387.5 391 57.5
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 1.4e-105 387.5 379 56.2
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 1.8e-105 387.1 382 57.9
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 3.1e-105 386.3 393 56.0
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 5.4e-105 385.6 399 57.6
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 5.4e-105 385.6 451 51.7
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 9.1e-105 384.8 384 56.5
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 1.2e-104 384.4 450 52.2
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.2e-104 384.4 440 52.7
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 1.2e-104 384.4 438 52.5
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 1.2e-104 384.4 387 56.1
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 2.7e-104 383.3 387 56.1
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 4.5e-104 382.5 382 56.5
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.0e-103 381.3 391 56.5
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.0e-103 381.3 406 55.9
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.3e-103 380.9 385 56.9
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 1.7e-103 380.6 387 56.3
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 3.8e-103 379.4 409 55.7
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 8.6e-103 378.3 384 56.8
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 8.6e-103 378.3 386 56.0
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.5e-102 377.5 390 55.1
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 1.9e-102 377.1 387 55.6
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.5e-102 376.7 390 55.9
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 3.3e-102 376.3 455 52.7
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 3.3e-102 376.3 417 54.2
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 3.3e-102 376.3 387 55.6
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 9.5e-102 374.8 387 55.0
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 1.6e-101 374.0 409 53.8
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 1.6e-101 374.0 392 55.9
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 2.1e-101 373.6 384 54.9
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 2.1e-101 373.6 447 53.0
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 2.8e-101 373.2 399 55.1
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 3.6e-101 372.9 348 59.2
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 4.7e-101 372.5 454 51.3
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 4.7e-101 372.5 387 55.8
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.4e-100 370.9 380 56.8
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 2.3e-100 370.2 404 53.2
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 3.0e-100 369.8 411 53.0
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 5.2e-100 369.0 386 55.4
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 6.8e-100 368.6 390 55.1
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 1.2e-99 367.9 397 54.7
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 2.6e-99 366.7 403 52.9
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 2.6e-99 366.7 387 55.3
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 2.8e-98 363.2 454 50.4
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 6.3e-98 362.1 425 52.0
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 8.3e-98 361.7 422 51.2
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 7.0e-97 358.6 391 52.7
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 9.2e-97 358.2 362 56.6
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.0e-96 357.1 392 53.3
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 4.5e-96 355.9 391 52.7
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 7.3e-94 348.6 454 50.2
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 1.2e-93 347.8 460 49.1
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.6e-93 347.4 457 49.7
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.1e-93 347.1 343 58.0
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.8e-93 346.7 332 59.3
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 1.5e-91 340.9 469 45.4
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 3.7e-90 336.3 436 47.9
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 1.9e-89 334.0 371 53.1
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 6.0e-88 328.9 365 51.2
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 4.3e-86 322.8 329 54.1
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 3.5e-80 303.1 384 48.7
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 1.9e-78 297.4 340 51.2
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 2.5e-78 297.0 340 50.9
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 1.2e-75 288.1 368 49.7
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 2.4e-68 263.8 377 46.4
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.2e-67 261.5 236 58.1
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 3.5e-64 250.0 244 57.8
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 1.3e-58 231.5 229 56.8
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 4.2e-49 199.9 394 35.8
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 1.4e-44 184.9 423 34.0
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 4.2e-41 173.3 140 63.6
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 4.2e-41 173.3 383 33.9
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 7.6e-35 152.5 142 63.4
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 2.7e-32 144.1 119 61.3
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 1.5e-27 128.3 133 57.1
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 1.7e-26 124.8 311 31.5
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 8.5e-26 122.5 239 36.4
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 2.7e-24 117.5 136 49.3
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 4.8e-21 106.7 149 47.0
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 2.4e-20 104.4 145 47.6
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 1.4e-17 95.1 113 46.9
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 9.4e-17 92.4 76 56.6
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 7.9e-16 89.4 101 57.4
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 1.0e-15 89.0 238 32.4
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.4e-15 88.6 163 40.5
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 6.3e-13 79.7 214 31.8
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 7.0e-12 76.3 80 55.0
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 1.6e-08 65.1 222 27.0
MCO08G142 Micromonas commoda HOM05D020588 ORTHO05D021297 2.1e-08 64.7 127 29.9
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 3.0e-07 60.8 134 35.8
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 5.2e-07 60.1 327 24.8
Hund13359 Selenicereus undatus HOM05D007414 ORTHO05D009482 7.4e-06 56.2 56 42.9


User provided reference genes

Program Settings