Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p14020 Brassica napus HOM05D005310 ORTHO05D024075 2.9e-51 204.9 102 100.0
BolC3t20422H Brassica oleracea HOM05D005310 ORTHO05D024075 3.4e-31 138.3 102 73.5
C03p81510 Brassica napus HOM05D060205 ORTHO05D024075 1.7e-30 136.0 99 75.8
BraA08t33392Z Brassica rapa HOM05D005310 ORTHO05D024075 1.4e-16 89.7 45 95.6
A01p10840 Brassica napus HOM05D005310 ORTHO05D006920 2.3e-08 62.4 35 85.7
BraA01t01031Z Brassica rapa HOM05D005310 ORTHO05D006920 2.3e-08 62.4 35 85.7
Thhalv10024714m.g Eutrema salsugineum HOM05D005310 ORTHO05D006920 3.1e-08 62.0 35 85.7
Aa31LG6G1520 Aethionema arabicum HOM05D005310 ORTHO05D006920 4.0e-08 61.6 41 73.2
Sp7g17520 Schrenkiella parvula HOM05D005310 ORTHO05D006920 5.2e-08 61.2 38 78.9
AL7G35440 Arabidopsis lyrata HOM05D005310 ORTHO05D006920 6.8e-08 60.8 35 82.9
CARHR225670 Cardamine hirsuta HOM05D005310 ORTHO05D006920 6.8e-08 60.8 35 82.9
BolC1t01261H Brassica oleracea HOM05D005310 ORTHO05D006920 8.9e-08 60.5 35 80.0
Ciclev10018335m.g Citrus clementina HOM05D005310 ORTHO05D006920 8.9e-08 60.5 36 80.6
AT4G18810 Arabidopsis thaliana HOM05D005310 ORTHO05D006920 1.2e-07 60.1 35 80.0
C01p12850 Brassica napus HOM05D005310 ORTHO05D006920 1.2e-07 60.1 35 80.0
Carub.0007s2242 Capsella rubella HOM05D005310 ORTHO05D006920 1.2e-07 60.1 35 80.0
Atru.chr10.1571 Acer truncatum HOM05D005310 ORTHO05D006920 2.0e-07 59.3 35 80.0
FAN16G3592 Fragaria x ananassa HOM05D005310 ORTHO05D006920 2.0e-07 59.3 36 80.6
MD05G1295400 Malus domestica HOM05D005310 ORTHO05D006920 2.0e-07 59.3 36 80.6
TWI53G0456 Tripterygium wilfordii HOM05D005310 ORTHO05D006920 3.4e-07 58.5 43 69.8
THA.LOC104806167 Tarenaya hassleriana HOM05D005310 ORTHO05D006920 4.4e-07 58.2 35 77.1
Gohir.D06G138800 Gossypium hirsutum HOM05D005310 ORTHO05D006920 5.8e-07 57.8 43 67.4
Os02g0234500 Oryza sativa ssp. japonica HOM05D005310 ORTHO05D006920 5.8e-07 57.8 42 69.0
ClCG03G007450 Citrullus lanatus HOM05D005310 ORTHO05D006920 7.5e-07 57.4 45 68.9
Nn3g21104 Nelumbo nucifera HOM05D005310 ORTHO05D006920 7.5e-07 57.4 43 65.1
Actinidia07651 Actinidia chinensis HOM05D005310 ORTHO05D006920 9.8e-07 57.0 43 67.4
GSVIVG01021256001 Vitis vinifera HOM05D005310 ORTHO05D006920 9.8e-07 57.0 43 65.1
ATR0012G016 Amborella trichopoda HOM05D005310 ORTHO05D006920 1.3e-06 56.6 35 74.3
Migut.M01009 Erythranthe guttata HOM05D005310 ORTHO05D006920 1.3e-06 56.6 42 64.3
FvH4_3g07310 Fragaria vesca HOM05D005310 ORTHO05D006920 1.3e-06 56.6 35 77.1
FAN25G3188 Fragaria x ananassa HOM05D005310 ORTHO05D006920 1.3e-06 56.6 35 77.1
Gohir.A06G133700 Gossypium hirsutum HOM05D005310 ORTHO05D006920 1.3e-06 56.6 43 65.1
MD00G1009300 Malus domestica HOM05D005310 ORTHO05D006920 1.3e-06 56.6 35 77.1
QL05p049965 Quercus lobata HOM05D005310 ORTHO05D006920 1.3e-06 56.6 35 80.0
RcHm_v2.0_Chr5g0011651 Rosa chinensis HOM05D005310 ORTHO05D006920 1.3e-06 56.6 35 77.1
Actinidia02744 Actinidia chinensis HOM05D005310 ORTHO05D006920 1.7e-06 56.2 42 69.0
Gorai.010G161400 Gossypium raimondii HOM05D005310 ORTHO05D006920 1.7e-06 56.2 43 65.1
Aqoxy1G01994 Aquilegia oxysepala HOM05D005310 ORTHO05D006920 2.2e-06 55.8 42 69.0
CAN.G411.52 Capsicum annuum HOM05D005310 ORTHO05D006920 2.2e-06 55.8 35 74.3
CiPaw.09G137200 Carya illinoinensis HOM05D005310 ORTHO05D006920 2.2e-06 55.8 35 77.1
DCAR_027984 Daucus carota HOM05D005310 ORTHO05D006920 2.2e-06 55.8 43 62.8
FAN11G0629 Fragaria x ananassa HOM05D005310 ORTHO05D006920 2.2e-06 55.8 35 77.1
FAN21G2773 Fragaria x ananassa HOM05D005310 ORTHO05D006920 2.2e-06 55.8 35 77.1
Potri.004G061200 Populus trichocarpa HOM05D005310 ORTHO05D006920 2.2e-06 55.8 35 74.3
SEGI_40960 Sequoiadendron giganteum HOM05D005310 ORTHO05D006920 2.2e-06 55.8 35 71.4
COL.COLO4_31237 Corchorus olitorius HOM05D005310 ORTHO05D006920 2.9e-06 55.5 43 60.5
Nitab4.5_0000437g0070 Nicotiana tabacum HOM05D005310 ORTHO05D006920 2.9e-06 55.5 36 75.0
PGSC0003DMG400028420 Solanum tuberosum HOM05D005310 ORTHO05D006920 2.9e-06 55.5 35 74.3
Sabra04G0040500 Salix brachista HOM05D005310 ORTHO05D006920 3.7e-06 55.1 35 71.4
SGA_v2.0_scaffold16G07714 Striga asiatica HOM05D005310 ORTHO05D006920 3.7e-06 55.1 43 62.8
TAR627G0081 Trochodendron aralioides HOM05D005310 ORTHO05D006920 3.7e-06 55.1 43 65.1
CsaV3_1G033090 Cucumis sativus L. HOM05D005310 ORTHO05D006920 4.9e-06 54.7 35 74.3
Manes.16G042900 Manihot esculenta HOM05D005310 ORTHO05D006920 4.9e-06 54.7 35 74.3
SalBow8G4237 Salvia bowleyana HOM05D005310 ORTHO05D006920 4.9e-06 54.7 43 62.8
arahy.Tifrunner.gnm1.ann1.W2RHW2 Arachis hypogaea HOM05D005310 ORTHO05D006920 6.4e-06 54.3 36 69.4
Duzib192G0594 Durio zibethinus HOM05D005310 ORTHO05D006920 6.4e-06 54.3 35 74.3
Sed0028201 Sechium edule HOM05D005310 ORTHO05D006920 6.4e-06 54.3 35 74.3
Sopen02g021140 Solanum pennellii HOM05D005310 ORTHO05D006920 6.4e-06 54.3 35 68.6
Cpa.g.sc7.109 Carica papaya HOM05D005310 ORTHO05D006920 8.3e-06 53.9 36 72.2
Dinv32338 Davidia involucrata HOM05D005310 ORTHO05D006920 8.3e-06 53.9 35 71.4
Zm00001eb204900 Zea mays HOM05D005310 ORTHO05D006920 8.3e-06 53.9 42 64.3


User provided reference genes

Program Settings