Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p13120 Brassica napus HOM05D003141 ORTHO05D003633 2.0e-276 955.3 538 100.0
BraA08t33288Z Brassica rapa HOM05D003141 ORTHO05D003633 8.2e-262 906.7 533 96.2
A08p13070 Brassica napus HOM05D003141 ORTHO05D003633 7.2e-258 893.6 534 95.9
BolC8t48462H Brassica oleracea HOM05D003141 ORTHO05D003633 1.9e-250 869.0 544 91.2
BcaC07g38056 Brassica carinata HOM05D003141 ORTHO05D003633 6.3e-246 854.0 539 90.5
BcaC07g38062 Brassica carinata HOM05D003141 ORTHO05D003633 9.2e-229 797.0 533 86.7
BraA08t33284Z Brassica rapa HOM05D003141 ORTHO05D003633 2.5e-226 788.9 530 82.1
A08p13010 Brassica napus HOM05D003141 ORTHO05D003633 2.1e-212 742.7 436 98.6
BcaC07g38055 Brassica carinata HOM05D003141 ORTHO05D003633 6.3e-145 518.5 539 61.6
AT4G17330 Arabidopsis thaliana HOM05D003141 ORTHO05D003633 2.0e-130 470.3 612 53.4
Thhalv10024186m.g Eutrema salsugineum HOM05D003141 ORTHO05D003633 3.5e-127 459.5 673 53.6
AL7G37390 Arabidopsis lyrata HOM05D003141 ORTHO05D003633 8.8e-123 444.9 618 51.6
Sp7g16850 Schrenkiella parvula HOM05D003141 ORTHO05D003633 3.7e-121 439.5 695 49.4
Carub.0007s2408 Capsella rubella HOM05D003141 ORTHO05D003633 1.2e-116 424.5 638 48.7
CARHR223940 Cardamine hirsuta HOM05D003141 ORTHO05D003633 4.1e-112 409.5 608 53.8
BcaC06g33544 Brassica carinata HOM05D003141 ORTHO05D003633 2.6e-106 390.2 550 55.5
Aa31LG6G80 Aethionema arabicum HOM05D003141 ORTHO05D003633 2.3e-102 377.1 593 47.2
BolC8t48452H Brassica oleracea HOM05D003141 ORTHO05D003633 1.7e-89 334.3 196 90.8
BolC8t48451H Brassica oleracea HOM05D003141 ORTHO05D003633 1.2e-63 248.4 180 87.2
BraA08t33285Z Brassica rapa HOM05D003141 ORTHO05D003633 4.5e-58 229.9 116 99.1
BcaNung00101 Brassica carinata HOM05D003141 ORTHO05D003633 3.2e-56 223.8 820 35.7
CANSAT21G0191 Cannabis sativa HOM05D003141 ORTHO05D003633 2.2e-44 184.5 207 52.2
Sabra01G0134100 Salix brachista HOM05D003141 ORTHO05D003633 2.8e-44 184.1 248 46.0
Cpa.g.sc29.173 Carica papaya HOM05D003141 ORTHO05D003633 8.2e-44 182.6 196 57.1
Atru.chr9.1295 Acer truncatum HOM05D003141 ORTHO05D003633 3.1e-43 180.6 144 64.6
QL12p011773 Quercus lobata HOM05D003141 ORTHO05D003633 5.3e-43 179.9 205 56.1
QL12p011944 Quercus lobata HOM05D003141 ORTHO05D003633 5.3e-43 179.9 205 56.1
CiPaw.12G051500 Carya illinoinensis HOM05D003141 ORTHO05D003633 6.9e-43 179.5 202 53.5
Potri.001G157300 Populus trichocarpa HOM05D003141 ORTHO05D003633 6.9e-43 179.5 248 45.6
Thecc.03G249800 Theobroma cacao HOM05D003141 ORTHO05D003633 9.0e-43 179.1 249 49.4
Sabra03G0047900 Salix brachista HOM05D003141 ORTHO05D003633 1.2e-42 178.7 163 58.9
Lj4g0011011 Lotus japonicus HOM05D003141 ORTHO05D003633 1.5e-42 178.3 149 63.8
Haze_07903 Corylus avellana HOM05D003141 ORTHO05D003633 2.6e-42 177.6 202 55.0
Duzib068G0714 Durio zibethinus HOM05D003141 ORTHO05D003633 7.7e-42 176.0 146 61.6
Duzib205G1689 Durio zibethinus HOM05D003141 ORTHO05D003633 1.0e-41 175.6 161 59.6
MD06G1057100 Malus domestica HOM05D003141 ORTHO05D003633 1.3e-41 175.3 197 55.8
Psat4g072560 Pisum sativum HOM05D003141 ORTHO05D003633 1.7e-41 174.9 172 55.8
Glyma.01G208600 Glycine max HOM05D003141 ORTHO05D003633 2.2e-41 174.5 166 59.6
Phvul.003G221300 Phaseolus vulgaris HOM05D003141 ORTHO05D003633 2.2e-41 174.5 147 65.3
Ciclev10018443m.g Citrus clementina HOM05D003141 ORTHO05D003633 2.9e-41 174.1 148 62.8
Glyma.11G033600 Glycine max HOM05D003141 ORTHO05D003633 2.9e-41 174.1 166 59.6
Gohir.D11G026200 Gossypium hirsutum HOM05D003141 ORTHO05D003633 5.0e-41 173.3 146 63.0
Gorai.007G028500 Gossypium raimondii HOM05D003141 ORTHO05D003633 5.0e-41 173.3 146 63.0
Potri.003G077600 Populus trichocarpa HOM05D003141 ORTHO05D003633 5.0e-41 173.3 222 49.5
Prupe.5G068000 Prunus persica HOM05D003141 ORTHO05D003633 6.5e-41 172.9 193 53.4
Phvul.002G057800 Phaseolus vulgaris HOM05D003141 ORTHO05D003633 8.5e-41 172.6 166 59.0
Manes.02G040600 Manihot esculenta HOM05D003141 ORTHO05D003633 1.1e-40 172.2 212 51.9
COL.COLO4_37160 Corchorus olitorius HOM05D003141 ORTHO05D003633 1.4e-40 171.8 484 32.9
FAN13G0222 Fragaria x ananassa HOM05D003141 ORTHO05D003633 1.4e-40 171.8 147 66.0
Lalb_Chr05g0214411 Lupinus albus HOM05D003141 ORTHO05D003633 1.4e-40 171.8 156 60.9
FvH4_5g19090 Fragaria vesca HOM05D003141 ORTHO05D003633 1.9e-40 171.4 147 66.0
FAN18G0989 Fragaria x ananassa HOM05D003141 ORTHO05D003633 1.9e-40 171.4 147 66.0
Gorai.008G234500 Gossypium raimondii HOM05D003141 ORTHO05D003633 1.9e-40 171.4 191 50.8
FAN08G3437 Fragaria x ananassa HOM05D003141 ORTHO05D003633 3.2e-40 170.6 147 65.3
TWI15G0894 Tripterygium wilfordii HOM05D003141 ORTHO05D003633 9.4e-40 169.1 146 58.2
arahy.Tifrunner.gnm1.ann1.YK7683 Arachis hypogaea HOM05D003141 ORTHO05D003633 1.2e-39 168.7 147 62.6
arahy.Tifrunner.gnm1.ann1.ZLH3PG Arachis hypogaea HOM05D003141 ORTHO05D003633 1.2e-39 168.7 147 62.6
GSVIVG01004716001 Vitis vinifera HOM05D003141 ORTHO05D003633 1.2e-39 168.7 149 63.1
Gohir.A08G169600 Gossypium hirsutum HOM05D003141 ORTHO05D003633 1.6e-39 168.3 146 60.3
Manes.01G081400 Manihot esculenta HOM05D003141 ORTHO05D003633 2.1e-39 167.9 154 59.7
TWI81G0497 Tripterygium wilfordii HOM05D003141 ORTHO05D003633 2.1e-39 167.9 168 55.4
Dinv21645 Davidia involucrata HOM05D003141 ORTHO05D003633 2.7e-39 167.5 175 56.6
Gohir.A12G216300 Gossypium hirsutum HOM05D003141 ORTHO05D003633 3.6e-39 167.2 191 49.7
Gohir.D12G218900 Gossypium hirsutum HOM05D003141 ORTHO05D003633 4.6e-39 166.8 191 49.7
Lalb_Chr09g0330011 Lupinus albus HOM05D003141 ORTHO05D003633 6.1e-39 166.4 182 54.9
CSS0047611 Camellia sinensis var. sinensis HOM05D003141 ORTHO05D003633 7.9e-39 166.0 145 62.1
RcHm_v2.0_Chr7g0203541 Rosa chinensis HOM05D003141 ORTHO05D003633 1.8e-38 164.9 215 50.2
MELO3C013931.2 Cucumis melo HOM05D003141 ORTHO05D003633 2.3e-38 164.5 227 47.1
Medtr4g100800 Medicago truncatula HOM05D003141 ORTHO05D003633 2.3e-38 164.5 171 55.6
PGR042G4011 Punica granatum HOM05D003141 ORTHO05D003633 2.3e-38 164.5 184 53.3
CsaV3_3G002610 Cucumis sativus L. HOM05D003141 ORTHO05D003633 3.0e-38 164.1 170 55.3
VMungo0251G2467 Vigna mungo HOM05D003141 ORTHO05D003633 3.0e-38 164.1 224 47.3
Gohir.D08G187900 Gossypium hirsutum HOM05D003141 ORTHO05D003633 3.9e-38 163.7 239 44.4
Dinv39155 Davidia involucrata HOM05D003141 ORTHO05D003633 6.7e-38 162.9 150 61.3
Lalb_Chr05g0221221 Lupinus albus HOM05D003141 ORTHO05D003633 6.7e-38 162.9 147 61.2
TAR374G0926 Trochodendron aralioides HOM05D003141 ORTHO05D003633 6.7e-38 162.9 154 59.1
ClCG10G002580 Citrullus lanatus HOM05D003141 ORTHO05D003633 8.8e-38 162.5 227 47.6
Sed0019628 Sechium edule HOM05D003141 ORTHO05D003633 8.8e-38 162.5 117 70.1
TAR629G2174 Trochodendron aralioides HOM05D003141 ORTHO05D003633 8.8e-38 162.5 158 59.5
TAR629G2689 Trochodendron aralioides HOM05D003141 ORTHO05D003633 8.8e-38 162.5 158 59.5
Ca_21973_v3 Cicer arietinum L. HOM05D003141 ORTHO05D003633 1.1e-37 162.2 223 48.9
Glyma.05G060300 Glycine max HOM05D003141 ORTHO05D003633 1.1e-37 162.2 148 60.1
MD04G1062800 Malus domestica HOM05D003141 ORTHO05D003633 1.1e-37 162.2 196 52.0
TAR636G0976 Trochodendron aralioides HOM05D003141 ORTHO05D003633 1.1e-37 162.2 156 59.6
Nn6g33922 Nelumbo nucifera HOM05D003141 ORTHO05D003633 1.5e-37 161.8 149 58.4
Lj8A264T56 Lonicera japonica HOM05D003141 ORTHO05D003633 2.0e-37 161.4 166 56.0
FAN04G0074 Fragaria x ananassa HOM05D003141 ORTHO05D003633 7.4e-37 159.5 200 51.5
VMungo1215G1426 Vigna mungo HOM05D003141 ORTHO05D003633 7.4e-37 159.5 630 28.4
Gorai.004G197800 Gossypium raimondii HOM05D003141 ORTHO05D003633 9.7e-37 159.1 239 43.9
TPR.G18122 Trifolium pratense HOM05D003141 ORTHO05D003633 1.3e-36 158.7 146 59.6
Medtr5g012780 Medicago truncatula HOM05D003141 ORTHO05D003633 2.2e-36 157.9 143 62.2
CSS0026981 Camellia sinensis var. sinensis HOM05D003141 ORTHO05D003633 2.8e-36 157.5 150 59.3
Lj2g0024874 Lotus japonicus HOM05D003141 ORTHO05D003633 3.7e-36 157.1 182 51.1
SGA_v2.0_scaffold199G41175 Striga asiatica HOM05D003141 ORTHO05D003633 4.8e-36 156.8 119 66.4
TPR.G37647 Trifolium pratense HOM05D003141 ORTHO05D003633 4.8e-36 156.8 496 31.0
Rhsim07G0109900 Rhododendron simsii HOM05D000370 ORTHO05D007301 1.8e-35 154.8 202 50.5
Ca_24583_v3 Cicer arietinum L. HOM05D003141 ORTHO05D003633 3.1e-35 154.1 217 46.1
Eucgr.D02089 Eucalyptus grandis HOM05D003141 ORTHO05D003633 4.1e-35 153.7 120 65.0
Psat2g177640 Pisum sativum HOM05D003141 ORTHO05D003633 4.1e-35 153.7 171 53.2
Hma1.2p1_0316F.1_g123020 Hydrangea macrophylla HOM05D003141 ORTHO05D003633 9.1e-35 152.5 142 58.5
Actinidia14419 Actinidia chinensis HOM05D003141 ORTHO05D003633 1.5e-34 151.8 167 52.1
BolC8t48450H Brassica oleracea HOM05D003141 ORTHO05D003633 7.7e-34 149.4 90 90.0
BolC8t48453H Brassica oleracea HOM05D003141 ORTHO05D003633 7.7e-34 149.4 90 90.0
Migut.A01111 Erythranthe guttata HOM05D003141 ORTHO05D003633 1.7e-33 148.3 119 63.0
Nn1g00964 Nelumbo nucifera HOM05D003141 ORTHO05D003633 1.7e-33 148.3 228 43.9
MSTRG.25519 Avicennia marina HOM05D003141 ORTHO05D003633 2.2e-33 147.9 119 62.2
Cc08_g12310 Coffea canephora HOM05D003141 ORTHO05D003633 2.9e-33 147.5 180 49.4
Oeu020432.4 Olea europaea HOM05D003141 ORTHO05D003633 2.9e-33 147.5 173 52.0
MSTRG.12108 Avicennia marina HOM05D003141 ORTHO05D003633 3.8e-33 147.1 145 53.8
SalBow6G4258 Salvia bowleyana HOM05D003141 ORTHO05D003633 8.5e-33 146.0 215 41.9
Sc07g0009290 Simmondsia chinensis HOM05D003141 ORTHO05D003633 1.9e-32 144.8 149 53.0
Solyc08g078530.4 Solanum lycopersicum HOM05D003141 ORTHO05D003633 1.9e-32 144.8 164 53.0
Oeu019602.2 Olea europaea HOM05D003141 ORTHO05D003633 2.5e-32 144.4 245 42.4
Sopen08g027010 Solanum pennellii HOM05D003141 ORTHO05D003633 3.2e-32 144.1 164 53.0
Nitab4.5_0001381g0110 Nicotiana tabacum HOM05D003141 ORTHO05D003633 4.2e-32 143.7 150 54.7
SGA_v2.0_scaffold104G30161 Striga asiatica HOM05D003141 ORTHO05D003633 4.2e-32 143.7 190 49.5
Nitab4.5_0002289g0020 Nicotiana tabacum HOM05D003141 ORTHO05D003633 5.5e-32 143.3 150 54.7
CAN.G1058.41 Capsicum annuum HOM05D003141 ORTHO05D003633 7.2e-32 142.9 140 57.9
AUR62019955 Chenopodium quinoa HOM05D003141 ORTHO05D003633 1.6e-31 141.7 184 47.3
Peaxi162Scf00209g00005 Petunia axillaris HOM05D003141 ORTHO05D003633 1.6e-31 141.7 146 55.5
AUR62007092 Chenopodium quinoa HOM05D003141 ORTHO05D003633 2.1e-31 141.4 148 54.1
EL10Ac5g12387 Beta vulgaris HOM05D003141 ORTHO05D003633 4.7e-31 140.2 119 60.5
Lj2C219G10 Lonicera japonica HOM05D003141 ORTHO05D003633 4.7e-31 140.2 119 62.2
Aqoxy7G00802 Aquilegia oxysepala HOM05D003141 ORTHO05D003633 7.9e-31 139.4 143 53.8
DCAR_006836 Daucus carota HOM05D003141 ORTHO05D003633 2.3e-30 137.9 143 53.1
MBI04_g09516_MAGBIO Magnolia biondii HOM05D003141 ORTHO05D003633 3.9e-30 137.1 253 38.7
Ah.12g053640 Amaranthus hybridus HOM05D003141 ORTHO05D003633 6.7e-30 136.3 119 58.0
Hund14553 Selenicereus undatus HOM05D003141 ORTHO05D003633 4.4e-29 133.7 236 40.7
PSO170G6315 Papaver somniferum HOM05D003141 ORTHO05D003633 5.7e-29 133.3 255 40.0
DCAR_027770 Daucus carota HOM05D003141 ORTHO05D003633 4.8e-28 130.2 237 39.2
vmacro00195 Vaccinium macrocarpon HOM05D003141 ORTHO05D003633 4.8e-28 130.2 163 49.1
ECA240G2052 Erigeron canadensis HOM05D003141 ORTHO05D003633 8.2e-28 129.4 130 54.6
unitig_21.g20317 Utricularia gibba HOM05D003141 ORTHO05D003633 1.8e-27 128.3 222 38.7
unitig_744.g24473 Utricularia gibba HOM05D003141 ORTHO05D003633 4.1e-27 127.1 134 53.7
Lsat_1_v5_gn_6_90740 Lactuca sativa HOM05D003141 ORTHO05D003633 9.1e-27 125.9 258 38.0
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 5.9e-26 123.2 244 40.2
ECA233G3821 Erigeron canadensis HOM05D003141 ORTHO05D003633 7.7e-26 122.9 209 40.2
Zm00001eb391270 Zea mays HOM05D003141 ORTHO05D003633 1.7e-25 121.7 114 57.0
ATR0317G002 Amborella trichopoda HOM05D003141 ORTHO05D003633 2.9e-25 120.9 182 44.5
CDE04G1375 Ceratophyllum demersum HOM05D003141 ORTHO05D003633 3.8e-25 120.6 139 49.6
Os10g0559700 Oryza sativa ssp. japonica HOM05D003141 ORTHO05D003633 2.5e-24 117.9 117 56.4
CDE02G1173 Ceratophyllum demersum HOM05D003141 ORTHO05D003633 4.2e-24 117.1 139 48.9
SHI20297 Sapria himalayana HOM05D003141 ORTHO05D003633 5.7e-21 106.7 156 41.0
HanXRQChr17g0549311 Helianthus annuus HOM05D003141 ORTHO05D003633 3.7e-20 104.0 115 53.0
PSO017G2158 Papaver somniferum HOM05D003141 ORTHO05D003633 4.8e-20 103.6 245 34.7
Sc22g0000930 Simmondsia chinensis HOM05D003141 ORTHO05D003633 6.3e-20 103.2 221 37.1
HanXRQChr03g0087821 Helianthus annuus HOM05D003141 ORTHO05D003633 2.7e-18 97.8 158 43.7
HanXRQChr16g0510701 Helianthus annuus HOM05D003141 ORTHO05D003633 1.5e-16 92.0 236 36.0
Psat4g091200 Pisum sativum HOM05D003141 ORTHO05D003633 7.5e-13 79.7 122 43.4
Psat2g028160 Pisum sativum HOM05D003141 ORTHO05D003633 3.1e-11 74.3 126 43.7
Psat4g091400 Pisum sativum HOM05D003141 ORTHO05D003633 4.1e-11 73.9 91 47.3
Psat4g076880 Pisum sativum HOM05D003141 ORTHO05D003633 1.2e-10 72.4 86 47.7
BolC8t48461H Brassica oleracea HOM05D003141 ORTHO05D003633 2.7e-10 71.2 49 81.6
BraA08t33289Z Brassica rapa HOM05D003141 ORTHO05D003633 2.2e-09 68.2 46 82.6
HPP92_022418 Vanilla planifolia HOM05D003141 ORTHO05D003633 2.5e-08 64.7 55 56.4


User provided reference genes

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