Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p12780 Brassica napus HOM05D003010 ORTHO05D003623 3.5e-40 167.9 91 100.0
BcaC07g38027 Brassica carinata HOM05D001429 ORTHO05D001420 2.5e-38 161.8 90 96.7
BraA08t33266Z Brassica rapa HOM05D003010 ORTHO05D003623 5.6e-38 160.6 90 95.6
BolC8t48419H Brassica oleracea HOM05D003010 ORTHO05D003623 3.2e-33 144.8 78 100.0
BcaB04g18394 Brassica carinata HOM05D001429 ORTHO05D001420 4.2e-33 144.4 87 95.4
BcaC09g50429 Brassica carinata HOM05D003010 ORTHO05D003623 6.3e-21 104.0 87 74.7
BraA01t01964Z Brassica rapa HOM05D000001 ORTHO05D009942 1.1e-20 103.2 88 73.9
BcaNung00140 Brassica carinata HOM05D003010 ORTHO05D003623 1.8e-20 102.4 87 72.4
Thhalv10026660m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 4.1e-20 101.3 87 70.1
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 5.3e-20 100.9 89 70.8
Carub.0007s2449 Capsella rubella HOM05D003010 ORTHO05D003623 1.5e-19 99.4 91 67.0
AT4G16840 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 1.7e-18 95.9 90 66.7
Thhalv10017475m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 1.2e-16 89.7 84 63.1
Aa31LG9G15070 Aethionema arabicum HOM05D003010 ORTHO05D003623 1.6e-16 89.4 89 55.1
CARHR129910 Cardamine hirsuta HOM05D003010 ORTHO05D003623 2.7e-16 88.6 89 58.4
Carub.0004s1739 Capsella rubella HOM05D003010 ORTHO05D003623 6.1e-16 87.4 89 56.2
C03p22900 Brassica napus HOM05D003010 ORTHO05D003623 7.9e-16 87.0 84 61.9
AL4G31750 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 1.1e-14 83.2 89 52.8
CARHR223470 Cardamine hirsuta HOM05D003010 ORTHO05D003623 1.5e-14 82.8 84 61.9
BcaC01g05717 Brassica carinata HOM05D003010 ORTHO05D003623 1.9e-14 82.4 84 58.3
Aa31LG2G13030 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.5e-14 82.0 89 59.6
AT2G35658 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 3.3e-14 81.6 88 52.3
BcaB01g03891 Brassica carinata HOM05D003010 ORTHO05D003623 3.3e-14 81.6 84 59.5
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 1.8e-12 75.9 90 52.2
BolC3t14689H Brassica oleracea HOM05D003010 ORTHO05D003623 2.4e-12 75.5 80 57.5
A03p19640 Brassica napus HOM05D003010 ORTHO05D003623 9.1e-12 73.6 80 55.0
BraA03t11217Z Brassica rapa HOM05D003010 ORTHO05D003623 9.1e-12 73.6 80 55.0
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 5.9e-11 70.9 84 53.6
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 1.3e-10 69.7 85 54.1
Dinv28854 Davidia involucrata HOM05D003010 ORTHO05D003623 1.7e-10 69.3 90 51.1
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 2.9e-10 68.6 85 51.8
Rhsim04G0160200 Rhododendron simsii HOM05D003010 ORTHO05D003623 6.5e-10 67.4 84 52.4
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 2.5e-09 65.5 91 44.0
Eucgr.E00369 Eucalyptus grandis HOM05D003010 ORTHO05D003623 7.2e-09 63.9 95 46.3
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 7.2e-09 63.9 84 48.8
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 9.4e-09 63.5 85 51.8
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 9.4e-09 63.5 84 48.8
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 1.6e-08 62.8 86 44.2
Prupe.5G059800 Prunus persica HOM05D003010 ORTHO05D003623 1.6e-08 62.8 85 50.6
Actinidia02185 Actinidia chinensis HOM05D003010 ORTHO05D003623 2.1e-08 62.4 84 47.6
Sp4g17920 Schrenkiella parvula HOM05D003010 ORTHO05D003623 2.1e-08 62.4 69 58.0
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 2.1e-08 62.4 90 48.9
Gohir.D09G249800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.7e-08 62.0 85 47.1
Gorai.006G274200 Gossypium raimondii HOM05D003010 ORTHO05D003623 2.7e-08 62.0 85 47.1
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.7e-08 62.0 87 49.4
Actinidia25899 Actinidia chinensis HOM05D003010 ORTHO05D003623 3.6e-08 61.6 84 47.6
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 3.6e-08 61.6 84 41.7
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 4.7e-08 61.2 84 47.6
MD06G1049300 Malus domestica HOM05D003010 ORTHO05D003623 7.9e-08 60.5 90 44.4
Thecc.03G147400 Theobroma cacao HOM05D003010 ORTHO05D003623 7.9e-08 60.5 86 45.3
RcHm_v2.0_Chr7g0204931 Rosa chinensis HOM05D003010 ORTHO05D003623 1.0e-07 60.1 91 44.0
Ciclev10023073m.g Citrus clementina HOM05D003010 ORTHO05D003623 1.4e-07 59.7 88 43.2
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 1.4e-07 59.7 85 48.2
MD04G1050500 Malus domestica HOM05D003010 ORTHO05D003623 1.8e-07 59.3 88 45.5
PSO063G3783 Papaver somniferum HOM05D003010 ORTHO05D003623 1.8e-07 59.3 86 47.7
Potri.001G152700 Populus trichocarpa HOM05D003010 ORTHO05D003623 1.8e-07 59.3 87 46.0
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 3.0e-07 58.5 89 44.9
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 3.0e-07 58.5 84 44.0
PSO782G2859 Papaver somniferum HOM05D003010 ORTHO05D003623 3.0e-07 58.5 84 48.8
Ah.07g199010 Amaranthus hybridus HOM05D003010 ORTHO05D003623 3.9e-07 58.2 89 44.9
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 3.9e-07 58.2 85 45.9
Migut.A01045 Erythranthe guttata HOM05D003010 ORTHO05D003623 3.9e-07 58.2 85 47.1
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 3.9e-07 58.2 84 44.0
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 3.9e-07 58.2 89 43.8
Ca_10413_v3 Cicer arietinum L. HOM05D003010 ORTHO05D000523 5.1e-07 57.8 87 44.8
Haze_07981 Corylus avellana HOM05D003010 ORTHO05D003623 5.1e-07 57.8 84 47.6
Manes.02G043601 Manihot esculenta HOM05D003010 ORTHO05D003623 5.1e-07 57.8 84 42.9
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 5.1e-07 57.8 86 48.8
Peaxi162Scf00446g00412 Petunia axillaris HOM05D003010 ORTHO05D003623 5.1e-07 57.8 87 44.8
Hund11331 Selenicereus undatus HOM05D003010 ORTHO05D003623 5.1e-07 57.8 91 42.9
Phvul.007G138100 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 6.7e-07 57.4 84 46.4
CiPaw.11G070300 Carya illinoinensis HOM05D003010 ORTHO05D003623 8.8e-07 57.0 86 50.0
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 8.8e-07 57.0 87 46.0
Cc08_g11590 Coffea canephora HOM05D003010 ORTHO05D003623 8.8e-07 57.0 45 62.2
Dinv21689 Davidia involucrata HOM05D003010 ORTHO05D003623 8.8e-07 57.0 84 50.0
Glyma.01G205800 Glycine max HOM05D003010 ORTHO05D003623 8.8e-07 57.0 49 57.1
Gohir.A09G248900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 8.8e-07 57.0 83 44.6
Manes.01G086500 Manihot esculenta HOM05D003010 ORTHO05D003623 8.8e-07 57.0 47 59.6
Sed0025535 Sechium edule HOM05D003010 ORTHO05D003623 8.8e-07 57.0 87 42.5
Ah.12g054120 Amaranthus hybridus HOM05D003010 ORTHO05D003623 1.1e-06 56.6 99 41.4
FAN04G3127 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.1e-06 56.6 47 57.4
FAN08G3583 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.1e-06 56.6 47 57.4
FAN13G2988 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.1e-06 56.6 47 57.4
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 1.5e-06 56.2 84 42.9
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 1.5e-06 56.2 85 48.2
Potri.003G081900 Populus trichocarpa HOM05D003010 ORTHO05D003623 2.0e-06 55.8 44 61.4
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 2.6e-06 55.5 84 44.0
Oeu017218.3 Olea europaea HOM05D003010 ORTHO05D003623 2.6e-06 55.5 84 44.0
Actinidia31768 Actinidia chinensis HOM05D003010 ORTHO05D003623 3.3e-06 55.1 85 44.7
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 3.3e-06 55.1 84 42.9
Sabra01G0057700 Salix brachista HOM05D000255 ORTHO05D000935 4.4e-06 54.7 91 40.7
Sabra03G0052800 Salix brachista HOM05D003010 ORTHO05D003623 4.4e-06 54.7 84 44.0
TPR.G31425 Trifolium pratense HOM05D003010 ORTHO05D003623 4.4e-06 54.7 49 57.1
TAR625G0712 Trochodendron aralioides HOM05D003010 ORTHO05D010439 4.4e-06 54.7 88 43.2
VMungo0720G1826 Vigna mungo HOM05D002495 ORTHO05D003623 4.4e-06 54.7 84 44.0
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 5.7e-06 54.3 84 44.0
FvH4_7g26830 Fragaria vesca HOM05D003010 ORTHO05D003623 5.7e-06 54.3 89 38.2
FAN03G0814 Fragaria x ananassa HOM05D000255 ORTHO05D003623 5.7e-06 54.3 89 38.2
Phvul.002G000700 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 5.7e-06 54.3 58 48.3
PGR042G0596 Punica granatum HOM05D003010 ORTHO05D003623 5.7e-06 54.3 97 43.3
RcHm_v2.0_Chr1g0373521 Rosa chinensis HOM05D003010 ORTHO05D003623 5.7e-06 54.3 85 42.4
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 5.7e-06 54.3 87 40.2
FvH4_5g20070 Fragaria vesca HOM05D003010 ORTHO05D003623 7.4e-06 53.9 95 40.0
Potri.001G080500 Populus trichocarpa HOM05D003010 ORTHO05D003623 7.4e-06 53.9 91 40.7
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 7.4e-06 53.9 85 43.5
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 7.4e-06 53.9 85 43.5
TPR.G13393 Trifolium pratense HOM05D003010 ORTHO05D003623 7.4e-06 53.9 92 40.2
Gohir.A03G005500 Gossypium hirsutum HOM05D003010 ORTHO05D003623 9.7e-06 53.5 85 44.7
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 9.7e-06 53.5 90 46.7


User provided reference genes

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