Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p11480 Brassica napus HOM05D007411 ORTHO05D009025 2.8e-88 328.9 168 100.0
BraA08t33142Z Brassica rapa HOM05D007411 ORTHO05D009025 2.0e-83 312.8 161 99.4
BcaB04g18262 Brassica carinata HOM05D007411 ORTHO05D009025 5.4e-76 288.1 169 89.3
BcaC07g37855 Brassica carinata HOM05D007411 ORTHO05D009025 2.3e-74 282.7 143 97.9
BolC8t48245H Brassica oleracea HOM05D007411 ORTHO05D009025 2.3e-74 282.7 143 97.9
AL7G41060 Arabidopsis lyrata HOM05D007411 ORTHO05D009025 1.1e-60 237.3 166 75.3
Thhalv10027383m.g Eutrema salsugineum HOM05D007411 ORTHO05D009025 2.3e-58 229.6 169 75.1
A05p16750 Brassica napus HOM05D007411 ORTHO05D009025 9.6e-57 224.2 172 73.8
BraA05t20476Z Brassica rapa HOM05D007411 ORTHO05D009025 1.6e-56 223.4 174 73.6
CARHR221360 Cardamine hirsuta HOM05D007411 ORTHO05D009025 1.6e-56 223.4 173 71.7
BcaC02g11603 Brassica carinata HOM05D007411 ORTHO05D009025 2.8e-56 222.6 172 72.1
C04p13410 Brassica napus HOM05D007411 ORTHO05D009025 2.8e-56 222.6 172 72.1
Sp7g12940 Schrenkiella parvula HOM05D007411 ORTHO05D009025 3.6e-56 222.2 151 76.8
A05p15610 Brassica napus HOM05D007411 ORTHO05D009025 8.1e-56 221.1 172 73.3
AT4G14805 Arabidopsis thaliana HOM05D007411 ORTHO05D009025 1.4e-55 220.3 168 70.8
BcaC08g44271 Brassica carinata HOM05D007411 ORTHO05D009025 9.0e-55 217.6 164 73.2
BraA05t20579Z Brassica rapa HOM05D007411 ORTHO05D009025 2.0e-54 216.5 174 71.8
BolC6t36888H Brassica oleracea HOM05D007411 ORTHO05D009025 3.4e-54 215.7 166 72.3
C06p16920 Brassica napus HOM05D007411 ORTHO05D009025 1.2e-51 207.2 188 63.8
BcaB02g07857 Brassica carinata HOM05D007411 ORTHO05D009025 2.7e-51 206.1 157 70.1
Carub.0007s2732 Capsella rubella HOM05D007411 ORTHO05D009025 8.4e-45 184.5 155 65.2
THA.LOC104808560 Tarenaya hassleriana HOM05D007411 ORTHO05D009025 3.7e-40 169.1 161 56.5
Prupe.1G017200 Prunus persica HOM05D007411 ORTHO05D009025 1.9e-25 120.2 161 44.7
TWI09G1055 Tripterygium wilfordii HOM05D007411 ORTHO05D009025 1.3e-24 117.5 172 43.0
Dinv14014 Davidia involucrata HOM05D007411 ORTHO05D009025 2.2e-24 116.7 149 46.3
CiPaw.01G198400 Carya illinoinensis HOM05D007411 ORTHO05D009025 1.8e-23 113.6 182 42.9
Hma1.2p1_1572F.1_g291440 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 2.4e-23 113.2 163 41.7
Hma1.2p1_2201F.1_g317040 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 2.4e-23 113.2 163 41.7
MD13G1196400 Malus domestica HOM05D007411 ORTHO05D009025 3.1e-23 112.8 119 50.4
QL06p001698 Quercus lobata HOM05D007411 ORTHO05D009025 5.3e-23 112.1 143 47.6
Potri.010G085000 Populus trichocarpa HOM05D007411 ORTHO05D009025 1.5e-22 110.5 158 41.8
Ciclev10006648m.g Citrus clementina HOM05D007411 ORTHO05D009025 4.5e-22 109.0 119 50.4
Cfa008473 Carpinus fangiana HOM05D007411 ORTHO05D009025 7.7e-22 108.2 104 53.8
ClCG06G006330 Citrullus lanatus HOM05D007411 ORTHO05D009025 1.3e-21 107.5 162 40.7
Atru.chr4.2432 Acer truncatum HOM05D007411 ORTHO05D009025 2.2e-21 106.7 121 45.5
Gohir.D09G219700 Gossypium hirsutum HOM05D007411 ORTHO05D009025 2.9e-21 106.3 163 43.6
Gorai.006G240700 Gossypium raimondii HOM05D007411 ORTHO05D009025 2.9e-21 106.3 163 43.6
CANSAT78G1457 Cannabis sativa HOM05D007411 ORTHO05D009025 3.8e-21 105.9 165 41.2
MELO3C012663.2 Cucumis melo HOM05D007411 ORTHO05D009025 6.5e-21 105.1 147 39.5
Gohir.A09G217300 Gossypium hirsutum HOM05D007411 ORTHO05D009025 8.5e-21 104.8 172 41.9
CsaV3_7G022390 Cucumis sativus L. HOM05D007411 ORTHO05D009025 1.4e-20 104.0 144 39.6
arahy.Tifrunner.gnm1.ann1.SC2WWN Arachis hypogaea HOM05D007411 ORTHO05D009025 1.9e-20 103.6 129 44.2
ECA236G4939 Erigeron canadensis HOM05D007411 ORTHO05D009025 1.9e-20 103.6 137 43.1
FvH4_4g15980 Fragaria vesca HOM05D007411 ORTHO05D009025 2.5e-20 103.2 162 41.4
Actinidia23528 Actinidia chinensis HOM05D007411 ORTHO05D009025 4.2e-20 102.4 130 45.4
Nitab4.5_0004062g0070 Nicotiana tabacum HOM05D007411 ORTHO05D009025 4.2e-20 102.4 132 43.2
MD16G1196900 Malus domestica HOM05D007411 ORTHO05D009025 5.5e-20 102.1 94 53.2
FAN17G1166 Fragaria x ananassa HOM05D007411 ORTHO05D009025 7.2e-20 101.7 179 36.9
arahy.Tifrunner.gnm1.ann1.UE7NK8 Arachis hypogaea HOM05D007411 ORTHO05D009025 9.4e-20 101.3 129 43.4
FAN12G4330 Fragaria x ananassa HOM05D007411 ORTHO05D009025 2.1e-19 100.1 172 37.8
Glyma.01G235100 Glycine max HOM05D007411 ORTHO05D009025 3.6e-19 99.4 104 52.9
FAN22G0418 Fragaria x ananassa HOM05D007411 ORTHO05D009025 4.6e-19 99.0 173 38.2
FAN07G0509 Fragaria x ananassa HOM05D007411 ORTHO05D009025 6.1e-19 98.6 179 36.3
LjContig00222g0000468 Lotus japonicus HOM05D007411 ORTHO05D009025 7.9e-19 98.2 132 43.9
PGR004G0639 Punica granatum HOM05D007411 ORTHO05D009025 7.9e-19 98.2 103 48.5
Lsat_1_v5_gn_9_80381 Lactuca sativa HOM05D007411 ORTHO05D009025 1.0e-18 97.8 108 43.5
Sopen09g031190 Solanum pennellii HOM05D007411 ORTHO05D009025 1.0e-18 97.8 140 42.1
Ca_24421_v3 Cicer arietinum L. HOM05D007411 ORTHO05D009025 1.4e-18 97.4 102 47.1
HanXRQChr05g0131941 Helianthus annuus HOM05D007411 ORTHO05D009025 1.4e-18 97.4 126 42.9
Aqoxy5G00439 Aquilegia oxysepala HOM05D007411 ORTHO05D009025 2.3e-18 96.7 170 35.3
Cpa.g.sc58.79 Carica papaya HOM05D007411 ORTHO05D009025 3.9e-18 95.9 134 41.8
Manes.03G176101 Manihot esculenta HOM05D007411 ORTHO05D009025 3.9e-18 95.9 168 37.5
Solyc09g082310.2 Solanum lycopersicum HOM05D007411 ORTHO05D009025 5.1e-18 95.5 140 41.4
CSS0014995 Camellia sinensis var. sinensis HOM05D007411 ORTHO05D009025 6.7e-18 95.1 101 47.5
Nitab4.5_0002307g0080 Nicotiana tabacum HOM05D007411 ORTHO05D009025 6.7e-18 95.1 103 45.6
Duzib151G0508 Durio zibethinus HOM05D007411 ORTHO05D009025 8.8e-18 94.7 125 42.4
Sed0024167 Sechium edule HOM05D007411 ORTHO05D009025 1.1e-17 94.4 135 39.3
Migut.G00360 Erythranthe guttata HOM05D007411 ORTHO05D009025 1.5e-17 94.0 122 41.8
Psat2g190000 Pisum sativum HOM05D007411 ORTHO05D009025 1.5e-17 94.0 133 42.1
SGA_v2.0_scaffold151G36714 Striga asiatica HOM05D007411 ORTHO05D009025 1.5e-17 94.0 152 39.5
Thecc.04G235100 Theobroma cacao HOM05D007411 ORTHO05D009025 1.5e-17 94.0 103 47.6
Peaxi162Scf00092g00336 Petunia axillaris HOM05D007411 ORTHO05D009025 2.5e-17 93.2 91 48.4
RcHm_v2.0_Chr4g0415591 Rosa chinensis HOM05D007411 ORTHO05D009025 3.3e-17 92.8 123 43.1
VMungo1215G0970 Vigna mungo HOM05D007411 ORTHO05D009025 3.3e-17 92.8 100 51.0
Phvul.002G042700 Phaseolus vulgaris HOM05D007411 ORTHO05D009025 7.4e-17 91.7 103 50.5
RcHm_v2.0_Chr4g0391821 Rosa chinensis HOM05D007411 ORTHO05D009025 7.4e-17 91.7 123 42.3
SalBow2G3064 Salvia bowleyana HOM05D007411 ORTHO05D009025 7.4e-17 91.7 166 36.1
CAN.G1094.25 Capsicum annuum HOM05D007411 ORTHO05D009025 1.3e-16 90.9 135 41.5
COL.COLO4_21515 Corchorus olitorius HOM05D007411 ORTHO05D009025 2.8e-16 89.7 104 45.2
Medtr2g049980 Medicago truncatula HOM05D007411 ORTHO05D009025 8.2e-16 88.2 100 48.0
Nn6g34119 Nelumbo nucifera HOM05D007411 ORTHO05D009025 1.4e-15 87.4 172 36.6
Medtr5g006900 Medicago truncatula HOM05D007411 ORTHO05D009025 2.4e-15 86.7 99 45.5
TAR633G2267 Trochodendron aralioides HOM05D007411 ORTHO05D009025 9.1e-15 84.7 122 39.3
LjContig00222g0003473 Lotus japonicus HOM05D007411 ORTHO05D009025 2.0e-14 83.6 129 42.6
Sc13g0004560 Simmondsia chinensis HOM05D007411 ORTHO05D009025 3.4e-14 82.8 166 33.7
DCAR_027228 Daucus carota HOM05D002080 ORTHO05D002062 5.9e-14 82.0 94 38.3
Eucgr.H03438 Eucalyptus grandis HOM05D007411 ORTHO05D009025 1.0e-13 81.3 103 40.8
PSO210G5563 Papaver somniferum HOM05D007411 ORTHO05D009025 2.9e-13 79.7 146 34.9
Psat7g023320 Pisum sativum HOM05D007411 ORTHO05D009025 3.8e-13 79.3 97 44.3
Lalb_Chr05g0211151 Lupinus albus HOM05D007411 ORTHO05D009025 5.0e-13 79.0 118 40.7
PSO832G1886 Papaver somniferum HOM05D007411 ORTHO05D009025 5.0e-13 79.0 149 34.9
Potri.008G155300 Populus trichocarpa HOM05D007411 ORTHO05D009025 5.0e-13 79.0 120 39.2
MBI11_g32995_MAGBIO Magnolia biondii HOM05D007411 ORTHO05D009025 6.5e-13 78.6 99 42.4
TPR.G3913 Trifolium pratense HOM05D007411 ORTHO05D009025 4.2e-12 75.9 86 48.8
CDE05G0749 Ceratophyllum demersum HOM05D007411 ORTHO05D009025 7.9e-11 71.6 130 34.6
PSO724G0575 Papaver somniferum HOM05D007411 ORTHO05D009025 1.4e-07 60.8 147 27.9
Os01g0607100 Oryza sativa ssp. japonica HOM05D032292 ORTHO05D009025 1.2e-06 57.8 129 30.2
Zm00001eb408970 Zea mays HOM05D032292 ORTHO05D009025 2.0e-06 57.0 151 31.8


User provided reference genes

Program Settings