Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 3.3e-184 648.3 342 100.0
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 3.6e-162 575.1 307 98.7
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 6.4e-159 564.3 301 98.3
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 1.2e-154 550.1 327 90.5
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 1.9e-142 509.6 304 91.4
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 5.6e-123 444.9 318 81.4
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 9.6e-123 444.1 318 79.6
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 1.1e-121 440.7 341 76.5
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 1.5e-120 436.8 341 75.1
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 1.7e-119 433.3 341 75.1
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 7.1e-118 427.9 317 77.6
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 1.0e-116 424.1 314 77.4
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 5.6e-115 418.3 327 75.5
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 4.8e-114 415.2 322 77.6
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 3.2e-110 402.5 314 76.1
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 9.6e-107 391.0 319 74.6
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 6.0e-101 371.7 312 72.8
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.8e-100 370.2 312 70.5
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 1.3e-98 364.0 311 71.4
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 7.7e-80 301.6 337 60.5
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 1.7e-74 283.9 224 72.8
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 2.2e-74 283.5 339 56.9
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 1.6e-69 267.3 349 53.3
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 4.4e-59 232.6 327 47.1
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 1.1e-57 228.0 338 47.6
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 5.9e-56 222.2 334 47.6
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 1.1e-54 218.0 321 47.4
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 1.5e-54 217.6 323 46.4
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 1.5e-54 217.6 347 45.2
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 5.5e-54 215.7 334 46.7
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 5.5e-54 215.7 318 45.0
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.6e-53 214.2 338 45.0
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 3.6e-53 213.0 300 52.7
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 3.6e-53 213.0 350 44.6
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 1.8e-52 210.7 303 46.9
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 4.0e-52 209.5 340 45.6
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 6.8e-52 208.8 319 46.4
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 2.6e-51 206.8 300 49.0
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 4.4e-51 206.1 334 44.0
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 4.9e-50 202.6 322 44.7
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 8.3e-50 201.8 328 43.0
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 1.7e-47 194.1 337 42.1
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 1.7e-47 194.1 337 42.1
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 3.8e-47 193.0 306 46.7
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 1.1e-46 191.4 323 44.0
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.5e-46 191.0 276 44.9
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 1.9e-46 190.7 253 47.8
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 4.3e-46 189.5 264 45.5
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 5.6e-46 189.1 328 42.4
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 1.2e-45 188.0 328 41.8
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.2e-45 188.0 356 41.9
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 1.6e-45 187.6 332 41.6
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.1e-45 187.2 354 41.5
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 8.0e-45 185.3 343 41.4
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 2.3e-44 183.7 346 41.0
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 5.2e-44 182.6 280 47.9
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.2e-44 182.6 356 39.9
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 5.2e-44 182.6 336 41.4
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 5.2e-44 182.6 325 42.2
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 6.8e-44 182.2 290 44.8
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 8.9e-44 181.8 265 45.3
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 2.6e-43 180.3 275 43.6
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 3.4e-43 179.9 325 43.1
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 7.5e-43 178.7 327 39.4
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.7e-42 177.6 326 41.7
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 1.7e-42 177.6 327 41.9
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 2.2e-42 177.2 279 46.2
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 2.9e-42 176.8 255 47.1
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 3.7e-42 176.4 282 44.0
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 3.7e-42 176.4 327 41.0
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 6.4e-42 175.6 322 40.4
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 8.3e-42 175.3 305 42.0
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 4.1e-41 172.9 332 41.3
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 7.0e-41 172.2 339 39.8
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 7.0e-41 172.2 334 40.1
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 7.0e-41 172.2 284 43.7
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 2.0e-40 170.6 344 39.5
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 6.0e-40 169.1 306 41.5
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.3e-39 167.9 327 37.9
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 2.3e-39 167.2 290 43.8
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 6.6e-39 165.6 278 42.8
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 8.6e-39 165.2 272 42.6
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.1e-38 164.9 350 38.6
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 1.9e-38 164.1 274 43.1
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.9e-38 164.1 294 39.8
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 1.9e-38 164.1 282 39.7
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 2.5e-38 163.7 295 38.6
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 3.3e-38 163.3 337 39.5
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.6e-38 162.5 284 39.4
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.2e-37 161.4 337 39.2
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 2.8e-37 160.2 276 39.5
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 3.6e-37 159.8 331 39.3
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 3.6e-37 159.8 343 36.7
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 4.7e-37 159.5 315 38.1
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 4.7e-37 159.5 289 40.1
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 6.2e-37 159.1 271 42.8
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 8.0e-37 158.7 296 39.2
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 8.0e-37 158.7 263 41.1
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 8.0e-37 158.7 336 39.0
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.1e-36 158.3 288 41.0
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 1.8e-36 157.5 293 39.6
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.8e-36 157.5 338 38.8
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 2.3e-36 157.1 283 41.7
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 4.0e-36 156.4 303 38.6
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 6.8e-36 155.6 287 40.1
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 1.2e-35 154.8 322 37.0
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 1.5e-35 154.5 283 39.9
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.5e-35 154.5 328 38.4
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.5e-35 154.5 312 37.5
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 2.0e-35 154.1 332 36.4
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 2.0e-35 154.1 286 39.9
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 4.4e-35 152.9 294 38.4
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 7.5e-35 152.1 264 40.9
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 7.5e-35 152.1 289 38.4
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 9.8e-35 151.8 286 38.5
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.7e-34 151.0 262 41.6
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 2.2e-34 150.6 263 40.3
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 3.7e-34 149.8 250 40.8
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 6.4e-34 149.1 175 49.7
BcaC07g37844 Brassica carinata HOM05D004643 ORTHO05D005535 1.4e-33 147.9 82 93.9
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 3.2e-33 146.7 265 39.6
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 7.0e-33 145.6 300 36.0
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 2.1e-32 144.1 288 36.5
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 2.7e-32 143.7 270 39.3
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 4.6e-32 142.9 277 37.2
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 1.0e-31 141.7 190 46.3
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.3e-31 141.4 267 38.6
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 3.0e-31 140.2 273 37.4
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 6.6e-31 139.0 207 44.4
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 8.6e-31 138.7 234 42.3
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 1.6e-29 134.4 303 37.3
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 6.2e-29 132.5 219 43.8
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 2.6e-27 127.1 279 38.0
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 2.2e-26 124.0 178 43.3
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 7.1e-25 119.0 314 33.8
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 6.0e-24 115.9 410 30.0
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 7.8e-24 115.5 296 34.5
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.0e-23 115.2 260 36.9
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 2.5e-22 110.5 288 35.4
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 3.6e-21 106.7 330 30.6
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 1.4e-20 104.8 221 36.7
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 1.8e-20 104.4 111 49.5
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 6.8e-20 102.4 179 40.8
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 1.2e-19 101.7 134 48.5
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 5.8e-19 99.4 239 34.7
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 1.3e-18 98.2 287 32.1
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 2.9e-18 97.1 263 31.6
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 2.9e-18 97.1 276 31.2
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 1.4e-17 94.7 222 34.2
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 1.9e-17 94.4 208 37.0
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 7.1e-17 92.4 98 54.1
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 8.1e-13 79.0 212 33.0
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 2.0e-11 74.3 56 62.5
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 2.6e-11 73.9 141 37.6
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 4.6e-08 63.2 162 32.7
SEGI_07840 Sequoiadendron giganteum HOM05D012961 ORTHO05D007249 3.3e-06 57.0 107 39.3
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 7.3e-06 55.8 87 44.8
PSO386G0059 Papaver somniferum HOM05D001047 ORTHO05D000768 7.3e-06 55.8 121 34.7
Potri.003G068900 Populus trichocarpa HOM05D001047 ORTHO05D000768 7.3e-06 55.8 118 33.1
PSO724G1109 Papaver somniferum HOM05D001047 ORTHO05D000768 9.6e-06 55.5 176 30.7


User provided reference genes

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