Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p10860 Brassica napus HOM05D005342 ORTHO05D006925 1.9e-29 131.7 63 100.0
BraA08t33082Z Brassica rapa HOM05D005342 ORTHO05D006925 8.5e-17 89.7 46 93.5
Sp1g26820 Schrenkiella parvula HOM05D005342 ORTHO05D006925 1.7e-09 65.5 46 78.3
BcaB07g32756 Brassica carinata HOM05D005342 ORTHO05D006925 8.5e-09 63.2 46 76.1
BcaC05g27129 Brassica carinata HOM05D005342 ORTHO05D006925 8.5e-09 63.2 46 76.1
A07p09560 Brassica napus HOM05D005342 ORTHO05D006925 8.5e-09 63.2 46 76.1
C05p30140 Brassica napus HOM05D005342 ORTHO05D006925 8.5e-09 63.2 46 76.1
BolC5t31751H Brassica oleracea HOM05D005342 ORTHO05D006925 8.5e-09 63.2 46 76.1
BraA07t28750Z Brassica rapa HOM05D005342 ORTHO05D006925 8.5e-09 63.2 46 76.1
Aa31LG9G16230 Aethionema arabicum HOM05D005342 ORTHO05D006925 1.4e-08 62.4 46 73.9
BcaB04g18195 Brassica carinata HOM05D005342 ORTHO05D006925 1.9e-08 62.0 46 73.9
C07p14720 Brassica napus HOM05D005342 ORTHO05D006925 1.9e-08 62.0 46 73.9
BolC7t41974H Brassica oleracea HOM05D005342 ORTHO05D006925 1.9e-08 62.0 46 73.9
Lj2A343T76 Lonicera japonica HOM05D005342 ORTHO05D006925 1.9e-08 62.0 46 73.9
AL1G45370 Arabidopsis lyrata HOM05D005342 ORTHO05D006925 3.2e-08 61.2 46 73.9
AT1G30960 Arabidopsis thaliana HOM05D005342 ORTHO05D006925 3.2e-08 61.2 46 73.9
A09p35250 Brassica napus HOM05D005342 ORTHO05D006925 3.2e-08 61.2 46 73.9
BraA09t39052Z Brassica rapa HOM05D005342 ORTHO05D006925 3.2e-08 61.2 46 73.9
Thhalv10007654m.g Eutrema salsugineum HOM05D005342 ORTHO05D006925 3.2e-08 61.2 46 73.9
THA.LOC104814325 Tarenaya hassleriana HOM05D005342 ORTHO05D006925 3.2e-08 61.2 46 71.7
Glyma.07G173800 Glycine max HOM05D005342 ORTHO05D006925 5.5e-08 60.5 46 69.6
Nn2g13664 Nelumbo nucifera HOM05D005342 ORTHO05D006925 5.5e-08 60.5 46 71.7
CARHR030500 Cardamine hirsuta HOM05D005342 ORTHO05D006925 7.2e-08 60.1 46 71.7
CSS0011520 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 9.4e-08 59.7 46 69.6
CSS0036835 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 9.4e-08 59.7 46 69.6
Carub.0001s2937 Capsella rubella HOM05D005342 ORTHO05D006925 9.4e-08 59.7 46 71.7
Rhsim03G0048000 Rhododendron simsii HOM05D005342 ORTHO05D006925 9.4e-08 59.7 46 69.6
GSVIVG01012146001 Vitis vinifera HOM05D005342 ORTHO05D006925 9.4e-08 59.7 46 69.6
Cc09_g05200 Coffea canephora HOM05D005342 ORTHO05D006925 1.6e-07 58.9 57 59.6
MD05G1246900 Malus domestica HOM05D005342 ORTHO05D006925 1.6e-07 58.9 46 69.6
MD10G1227500 Malus domestica HOM05D005342 ORTHO05D006925 1.6e-07 58.9 46 69.6
Dinv11757 Davidia involucrata HOM05D005342 ORTHO05D006925 2.1e-07 58.5 46 67.4
Dinv36886 Davidia involucrata HOM05D005342 ORTHO05D006925 2.1e-07 58.5 46 67.4
HanXRQChr05g0148741 Helianthus annuus HOM05D005342 ORTHO05D006925 2.1e-07 58.5 46 67.4
TAR626G0514 Trochodendron aralioides HOM05D005342 ORTHO05D006925 2.1e-07 58.5 46 69.6
vmacro21284 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 2.7e-07 58.2 46 67.4
MSTRG.16371 Avicennia marina HOM05D005342 ORTHO05D006925 3.6e-07 57.8 46 67.4
DCAR_001275 Daucus carota HOM05D005342 ORTHO05D006925 3.6e-07 57.8 46 67.4
Lj2g0003117 Lotus japonicus HOM05D005342 ORTHO05D006925 3.6e-07 57.8 46 67.4
PSO017G0115 Papaver somniferum HOM05D005342 ORTHO05D006925 3.6e-07 57.8 46 69.6
PSO063G2198 Papaver somniferum HOM05D005342 ORTHO05D006925 3.6e-07 57.8 46 69.6
CANSAT35G0196 Cannabis sativa HOM05D005342 ORTHO05D006925 4.6e-07 57.4 46 67.4
Lsat_1_v5_gn_6_95820 Lactuca sativa HOM05D005342 ORTHO05D006925 6.1e-07 57.0 46 67.4
Medtr1g033240 Medicago truncatula HOM05D005342 ORTHO05D006925 7.9e-07 56.6 46 63.0
Medtr5g020440 Medicago truncatula HOM05D005342 ORTHO05D006925 7.9e-07 56.6 46 63.0
Medtr6g024095 Medicago truncatula HOM05D005342 ORTHO05D006925 7.9e-07 56.6 46 63.0
vmacro07644 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 7.9e-07 56.6 46 65.2
HPP92_001865 Vanilla planifolia HOM05D005342 ORTHO05D006925 7.9e-07 56.6 46 65.2
HPP92_001898 Vanilla planifolia HOM05D005342 ORTHO05D006925 7.9e-07 56.6 46 65.2
Zm00001eb171110 Zea mays HOM05D005342 ORTHO05D006925 7.9e-07 56.6 46 65.2
arahy.Tifrunner.gnm1.ann1.EGN9M7 Arachis hypogaea HOM05D005342 ORTHO05D006925 1.4e-06 55.8 46 63.0
Ca_26328_v3 Cicer arietinum L. HOM05D005342 ORTHO05D006925 1.4e-06 55.8 46 63.0
MELO3C007034.2 Cucumis melo HOM05D005342 ORTHO05D006925 1.4e-06 55.8 46 65.2
CsaV3_6G052760 Cucumis sativus L. HOM05D005342 ORTHO05D006925 1.4e-06 55.8 46 65.2
ECA246G2798 Erigeron canadensis HOM05D005342 ORTHO05D006925 1.4e-06 55.8 46 63.0
Lalb_Chr10g0095551 Lupinus albus HOM05D005342 ORTHO05D006925 1.4e-06 55.8 46 63.0
Phvul.003G015000 Phaseolus vulgaris HOM05D005342 ORTHO05D006925 1.4e-06 55.8 46 63.0
Potri.001G160800 Populus trichocarpa HOM05D005342 ORTHO05D006925 1.4e-06 55.8 46 63.0
Sabra01G0131500 Salix brachista HOM05D005342 ORTHO05D006925 1.4e-06 55.8 46 63.0
Sed0018199 Sechium edule HOM05D005342 ORTHO05D006925 1.4e-06 55.8 46 65.2
Aqoxy1G01397 Aquilegia oxysepala HOM05D005342 ORTHO05D006925 1.8e-06 55.5 46 63.0
Psat6g050320 Pisum sativum HOM05D005342 ORTHO05D006925 2.3e-06 55.1 46 60.9
CDE03G0515 Ceratophyllum demersum HOM05D005342 ORTHO05D006925 3.0e-06 54.7 46 65.2
CDE06G1455 Ceratophyllum demersum HOM05D005342 ORTHO05D006925 3.0e-06 54.7 46 65.2
Eucgr.D00013 Eucalyptus grandis HOM05D005342 ORTHO05D006925 3.0e-06 54.7 46 60.9
PGR004G0306 Punica granatum HOM05D005342 ORTHO05D006925 3.0e-06 54.7 46 60.9
AUR62020653 Chenopodium quinoa HOM05D005342 ORTHO05D006925 3.9e-06 54.3 45 64.4
AUR62038720 Chenopodium quinoa HOM05D005342 ORTHO05D006925 3.9e-06 54.3 45 64.4
Os08g0207600 Oryza sativa ssp. japonica HOM05D005342 ORTHO05D006925 3.9e-06 54.3 46 63.0
ATR0763G223 Amborella trichopoda HOM05D005342 ORTHO05D006925 5.1e-06 53.9 43 69.8
Cpa.g.sc1627.2 Carica papaya HOM05D005342 ORTHO05D006925 5.1e-06 53.9 46 58.7
CiPaw.09G137700 Carya illinoinensis HOM05D005342 ORTHO05D006925 5.1e-06 53.9 46 63.0
AUR62043831 Chenopodium quinoa HOM05D005342 ORTHO05D006925 5.1e-06 53.9 45 62.2
Migut.M02010 Erythranthe guttata HOM05D005342 ORTHO05D006925 5.1e-06 53.9 46 60.9
EL10Ac2g03680 Beta vulgaris HOM05D005342 ORTHO05D006925 6.7e-06 53.5 45 66.7
Prupe.4G117500 Prunus persica HOM05D005342 ORTHO05D006925 6.7e-06 53.5 46 60.9
Sc17g0004080 Simmondsia chinensis HOM05D005342 ORTHO05D006925 6.7e-06 53.5 45 66.7
TPR.G34568 Trifolium pratense HOM05D005342 ORTHO05D006925 6.7e-06 53.5 46 58.7
TWI53G1312 Tripterygium wilfordii HOM05D005342 ORTHO05D006925 8.8e-06 53.1 46 60.9


User provided reference genes

Program Settings