Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p10380 Brassica napus HOM05D004130 ORTHO05D004705 6.2e-17 89.7 46 100.0
BraA08t33038Z Brassica rapa HOM05D004130 ORTHO05D004705 6.2e-17 89.7 46 100.0
Sp1g27510 Schrenkiella parvula HOM05D004130 ORTHO05D004705 1.4e-16 88.6 46 97.8
BcaC07g37723 Brassica carinata HOM05D004130 ORTHO05D004705 4.0e-16 87.0 46 95.7
BolC8t48106H Brassica oleracea HOM05D004130 ORTHO05D004705 4.0e-16 87.0 46 95.7
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 1.2e-15 85.5 46 93.5
A05p25500 Brassica napus HOM05D004130 ORTHO05D004705 1.2e-15 85.5 46 93.5
C05p39640 Brassica napus HOM05D004130 ORTHO05D004705 1.2e-15 85.5 46 93.5
BolC5t32704H Brassica oleracea HOM05D004130 ORTHO05D004705 1.2e-15 85.5 46 93.5
BraA05t21434Z Brassica rapa HOM05D004130 ORTHO05D004705 1.2e-15 85.5 46 93.5
Aa31LG2G14240 Aethionema arabicum HOM05D004130 ORTHO05D004705 3.4e-15 84.0 43 95.3
BcaB03g13788 Brassica carinata HOM05D004130 ORTHO05D004705 3.4e-15 84.0 46 91.3
C05p40370 Brassica napus HOM05D004130 ORTHO05D004705 1.3e-14 82.0 46 89.1
BolC5t32777H Brassica oleracea HOM05D004130 ORTHO05D004705 1.3e-14 82.0 46 89.1
BcaB07g32828 Brassica carinata HOM05D004130 ORTHO05D004705 2.9e-14 80.9 47 91.5
C05p31030 Brassica napus HOM05D004130 ORTHO05D004705 2.9e-14 80.9 47 91.5
BcaC05g27197 Brassica carinata HOM05D004130 ORTHO05D004705 4.9e-14 80.1 47 91.5
BolC5t31827H Brassica oleracea HOM05D004130 ORTHO05D004705 4.9e-14 80.1 47 91.5
AT1G31812 Arabidopsis thaliana HOM05D004130 ORTHO05D004705 1.4e-13 78.6 46 84.8
A09p34530 Brassica napus HOM05D004130 ORTHO05D004705 5.4e-13 76.6 46 89.1
BraA09t38994Z Brassica rapa HOM05D004130 ORTHO05D004705 5.4e-13 76.6 46 89.1
HanXRQChr17g0537111 Helianthus annuus HOM05D004130 ORTHO05D004705 7.1e-13 76.3 43 86.0
Solyc08g075690.3 Solanum lycopersicum HOM05D004130 ORTHO05D004705 7.1e-13 76.3 43 83.7
Zm00001eb378890 Zea mays HOM05D004130 ORTHO05D004705 7.1e-13 76.3 44 84.1
Thhalv10009206m.g Eutrema salsugineum HOM05D004130 ORTHO05D004705 9.2e-13 75.9 44 84.1
AL1G45890 Arabidopsis lyrata HOM05D004130 ORTHO05D004705 1.6e-12 75.1 43 83.7
Sopen08g024340 Solanum pennellii HOM05D004130 ORTHO05D004705 2.1e-12 74.7 43 81.4
PGSC0003DMG400030867 Solanum tuberosum HOM05D004130 ORTHO05D004705 2.7e-12 74.3 43 81.4
GSVIVG01022804001 Vitis vinifera HOM05D004130 ORTHO05D004705 2.7e-12 74.3 44 79.5
CSS0012724 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 4.6e-12 73.6 43 81.4
CSS0014160 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 4.6e-12 73.6 43 81.4
CSS0035325 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 4.6e-12 73.6 43 81.4
Sabra03G0070800 Salix brachista HOM05D004130 ORTHO05D004705 4.6e-12 73.6 43 81.4
CAN.G800.12 Capsicum annuum HOM05D004130 ORTHO05D004705 6.0e-12 73.2 43 79.1
FvH4_5g24090 Fragaria vesca HOM05D004130 ORTHO05D004705 6.0e-12 73.2 41 82.9
FAN18G1566 Fragaria x ananassa HOM05D004130 ORTHO05D004705 6.0e-12 73.2 41 82.9
FAN18G3743 Fragaria x ananassa HOM05D004130 ORTHO05D004705 6.0e-12 73.2 41 82.9
Manes.17G006800 Manihot esculenta HOM05D004130 ORTHO05D004705 6.0e-12 73.2 46 82.6
FAN04G1172 Fragaria x ananassa HOM05D004130 ORTHO05D004705 7.8e-12 72.8 41 82.9
FAN13G0805 Fragaria x ananassa HOM05D004130 ORTHO05D004705 7.8e-12 72.8 41 82.9
Glyma.04G122900 Glycine max HOM05D004130 ORTHO05D004705 7.8e-12 72.8 43 81.4
Manes.15G182400 Manihot esculenta HOM05D004130 ORTHO05D004705 7.8e-12 72.8 46 82.6
Carub.0001s3012 Capsella rubella HOM05D004130 ORTHO05D004705 1.0e-11 72.4 41 82.9
CiPaw.11G103700 Carya illinoinensis HOM05D004130 ORTHO05D004705 1.0e-11 72.4 43 81.4
Dinv37412 Davidia involucrata HOM05D004130 ORTHO05D004705 1.0e-11 72.4 46 78.3
Eucgr.E01218 Eucalyptus grandis HOM05D004130 ORTHO05D004705 1.0e-11 72.4 43 79.1
Os08g0162800 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 1.0e-11 72.4 44 79.5
COL.COLO4_37232 Corchorus olitorius HOM05D004130 ORTHO05D004705 1.3e-11 72.0 43 79.1
DCAR_030897 Daucus carota HOM05D004130 ORTHO05D004705 1.3e-11 72.0 40 85.0
Dinv41817 Davidia involucrata HOM05D004130 ORTHO05D004705 1.3e-11 72.0 43 79.1
Medtr5g026740 Medicago truncatula HOM05D004130 ORTHO05D004705 1.3e-11 72.0 42 81.0
Potri.003G103700 Populus trichocarpa HOM05D004130 ORTHO05D004705 1.3e-11 72.0 43 79.1
Thecc.03G325000 Theobroma cacao HOM05D004130 ORTHO05D004705 1.3e-11 72.0 44 84.1
PGR042G1275 Punica granatum HOM05D004130 ORTHO05D004705 1.7e-11 71.6 43 79.1
ATR0829G178 Amborella trichopoda HOM05D004130 ORTHO05D004705 2.3e-11 71.2 43 81.4
CARHR031130 Cardamine hirsuta HOM05D004130 ORTHO05D004705 2.3e-11 71.2 46 80.4
CiPaw.12G072200 Carya illinoinensis HOM05D004130 ORTHO05D004705 2.3e-11 71.2 43 79.1
PSO063G4979 Papaver somniferum HOM05D004130 ORTHO05D004705 2.3e-11 71.2 43 79.1
PSO782G2341 Papaver somniferum HOM05D004130 ORTHO05D004705 2.3e-11 71.2 43 79.1
QL12p001893 Quercus lobata HOM05D004130 ORTHO05D004705 2.3e-11 71.2 43 79.1
Actinidia14738 Actinidia chinensis HOM05D004130 ORTHO05D004705 3.0e-11 70.9 43 76.7
Ca_25095_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 3.0e-11 70.9 43 79.1
Ca_30395_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 3.0e-11 70.9 43 79.1
ECA240G1912 Erigeron canadensis HOM05D000302 ORTHO05D000334 3.0e-11 70.9 37 91.9
Sabra01G0100700 Salix brachista HOM05D004130 ORTHO05D004705 3.0e-11 70.9 43 76.7
SalBow8G1427 Salvia bowleyana HOM05D004130 ORTHO05D004705 3.0e-11 70.9 44 79.5
TPR.G17251 Trifolium pratense HOM05D004130 ORTHO05D004705 3.0e-11 70.9 42 81.0
TAR375G1053 Trochodendron aralioides HOM05D004130 ORTHO05D004705 3.0e-11 70.9 46 80.4
CANSAT21G0569 Cannabis sativa HOM05D004130 ORTHO05D004705 3.9e-11 70.5 46 82.6
DCAR_006311 Daucus carota HOM05D004130 ORTHO05D004705 3.9e-11 70.5 37 86.5
Lsat_1_v5_gn_3_23340 Lactuca sativa HOM05D004130 ORTHO05D004705 3.9e-11 70.5 41 80.5
Psat0s1441g0080 Pisum sativum HOM05D000032 ORTHO05D004705 3.9e-11 70.5 43 79.1
Psat2g143680 Pisum sativum HOM05D004130 ORTHO05D004705 3.9e-11 70.5 43 79.1
PGR031G3679 Punica granatum HOM05D004130 ORTHO05D004705 3.9e-11 70.5 43 76.7
PGR067G0004 Punica granatum HOM05D004130 ORTHO05D004705 3.9e-11 70.5 43 76.7
TWI36G0806 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 3.9e-11 70.5 46 82.6
Nn1g02053 Nelumbo nucifera HOM05D004130 ORTHO05D004705 5.1e-11 70.1 43 76.7
Nitab4.5_0001023g0180 Nicotiana tabacum HOM05D004130 ORTHO05D004705 5.1e-11 70.1 42 78.6
Oeu046800.1 Olea europaea HOM05D004130 ORTHO05D004705 5.1e-11 70.1 41 80.5
Potri.001G130200 Populus trichocarpa HOM05D004130 ORTHO05D004705 5.1e-11 70.1 43 76.7
TWI12G1099 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 5.1e-11 70.1 43 81.4
TAR374G0121 Trochodendron aralioides HOM05D004130 ORTHO05D004705 5.1e-11 70.1 43 76.7
Duzib106G0486 Durio zibethinus HOM05D004130 ORTHO05D004705 6.6e-11 69.7 44 77.3
Gorai.007G349800 Gossypium raimondii HOM05D004130 ORTHO05D004705 6.6e-11 69.7 43 76.7
Nn3g19256 Nelumbo nucifera HOM05D004130 ORTHO05D004705 6.6e-11 69.7 43 76.7
THA.LOC104798518 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 6.6e-11 69.7 43 76.7
Aqoxy7G01323 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 8.6e-11 69.3 43 74.4
MD00G1002100 Malus domestica HOM05D004130 ORTHO05D004705 8.6e-11 69.3 46 78.3
Glyma.09G214500 Glycine max HOM05D004130 ORTHO05D004705 1.1e-10 68.9 43 76.7
THA.LOC104814400 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 1.1e-10 68.9 46 78.3
Actinidia32778 Actinidia chinensis HOM05D004130 ORTHO05D004705 1.5e-10 68.6 43 74.4
CsaV3_3G001010 Cucumis sativus L. HOM05D004130 ORTHO05D004705 1.5e-10 68.6 42 78.6
ECA246G1091 Erigeron canadensis HOM05D004130 ORTHO05D004705 1.5e-10 68.6 43 74.4
Nitab4.5_0000030g0220 Nicotiana tabacum HOM05D004130 ORTHO05D004705 1.5e-10 68.6 42 76.2
Peaxi162Scf00193g00214 Petunia axillaris HOM05D004130 ORTHO05D004705 1.5e-10 68.6 43 76.7
Cpa.g.c33773 Carica papaya HOM05D004130 ORTHO05D004705 1.9e-10 68.2 43 72.1
Ciclev10002973m.g Citrus clementina HOM05D004130 ORTHO05D004705 1.9e-10 68.2 43 74.4
Phvul.002G127700 Phaseolus vulgaris HOM05D004130 ORTHO05D004705 1.9e-10 68.2 37 83.8
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 1.9e-10 68.2 37 83.8
arahy.Tifrunner.gnm1.ann1.DIJ3RT Arachis hypogaea HOM05D004130 ORTHO05D004705 2.5e-10 67.8 37 81.1
arahy.Tifrunner.gnm1.ann1.X5SRIL Arachis hypogaea HOM05D004130 ORTHO05D004705 2.5e-10 67.8 37 81.1
Migut.E01354 Erythranthe guttata HOM05D004130 ORTHO05D004705 2.5e-10 67.8 41 75.6
Gohir.D11G319700 Gossypium hirsutum HOM05D004130 ORTHO05D004705 2.5e-10 67.8 43 74.4
Rhsim11G0034100 Rhododendron simsii HOM05D004130 ORTHO05D004705 2.5e-10 67.8 41 75.6
Actinidia01260 Actinidia chinensis HOM05D004130 ORTHO05D004705 3.3e-10 67.4 43 74.4
MELO3C031937.2 Cucumis melo HOM05D004130 ORTHO05D004705 3.3e-10 67.4 42 76.2
Prupe.5G019500 Prunus persica HOM05D004130 ORTHO05D004705 3.3e-10 67.4 46 73.9
RcHm_v2.0_Chr7g0213621 Rosa chinensis HOM05D004130 ORTHO05D004705 3.3e-10 67.4 37 81.1
CDE02G3877 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 4.3e-10 67.0 42 73.8
CDE11G1231 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 4.3e-10 67.0 42 73.8
Dinv25573 Davidia involucrata HOM05D004130 ORTHO05D004705 4.3e-10 67.0 41 78.0
Gohir.D11G319800 Gossypium hirsutum HOM05D004130 ORTHO05D004705 4.3e-10 67.0 42 73.8
Gorai.007G349900 Gossypium raimondii HOM05D004130 ORTHO05D004705 4.3e-10 67.0 42 73.8
Os06g0115300 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 4.3e-10 67.0 44 70.5
TAR636G0177 Trochodendron aralioides HOM05D004130 ORTHO05D004705 4.3e-10 67.0 41 78.0
Hma1.2p1_1873F.1_g306170 Hydrangea macrophylla HOM05D004130 ORTHO05D004705 5.6e-10 66.6 42 71.4
Lalb_Chr16g0380701 Lupinus albus HOM05D004130 ORTHO05D004705 5.6e-10 66.6 42 73.8
Zm00001eb415460 Zea mays HOM05D004130 ORTHO05D004705 5.6e-10 66.6 42 76.2
Aqoxy4G02079 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 7.3e-10 66.2 43 69.8
ClCG10G000940 Citrullus lanatus HOM05D004130 ORTHO05D004705 7.3e-10 66.2 42 73.8
Os03g0576600 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 7.3e-10 66.2 41 75.6
vmacro00053 Vaccinium macrocarpon HOM05D004130 ORTHO05D004705 7.3e-10 66.2 42 73.8
Atru.chr6.2108 Acer truncatum HOM05D004130 ORTHO05D004705 9.5e-10 65.9 43 72.1
Gohir.A11G304400 Gossypium hirsutum HOM05D004130 ORTHO05D004705 9.5e-10 65.9 42 71.4
Lalb_Chr05g0215391 Lupinus albus HOM05D004130 ORTHO05D004705 1.2e-09 65.5 43 72.1
MBI04_g27275_MAGBIO Magnolia biondii HOM05D004130 ORTHO05D004705 1.2e-09 65.5 42 76.2
Lj2g0015830 Lotus japonicus HOM05D004130 ORTHO05D004705 1.6e-09 65.1 43 72.1
GSVIVG01015105001 Vitis vinifera HOM05D004130 ORTHO05D004705 1.6e-09 65.1 41 75.6
Prupe.7G202100 Prunus persica HOM05D004130 ORTHO05D004705 3.6e-09 63.9 45 68.9
MSTRG.11879 Avicennia marina HOM05D004130 ORTHO05D004705 4.7e-09 63.5 42 71.4
Sed0010064 Sechium edule HOM05D004130 ORTHO05D004705 4.7e-09 63.5 42 69.0
unitig_32.g11633 Utricularia gibba HOM05D004130 ORTHO05D004705 4.7e-09 63.5 43 67.4
Sc01g0007080 Simmondsia chinensis HOM05D004130 ORTHO05D004705 8.1e-09 62.8 37 78.4
Aqoxy4G01989 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 1.1e-08 62.4 43 67.4
BolC5t32707H Brassica oleracea HOM05D004130 ORTHO05D004705 1.1e-08 62.4 38 84.2
Eucgr.C00828 Eucalyptus grandis HOM05D004130 ORTHO05D004705 1.4e-08 62.0 36 80.6
Hund11098 Selenicereus undatus HOM05D004130 ORTHO05D004705 3.1e-08 60.8 38 73.7
MD06G1017000 Malus domestica HOM05D004130 ORTHO05D004705 4.0e-08 60.5 42 66.7
EL10Ac5g11913 Beta vulgaris HOM05D004130 ORTHO05D004705 5.2e-08 60.1 46 69.6
AUR62027316 Chenopodium quinoa HOM05D004130 ORTHO05D004705 5.2e-08 60.1 43 65.1
MD15G1215200 Malus domestica HOM05D004130 ORTHO05D004705 5.2e-08 60.1 41 68.3
Cc00_g07460 Coffea canephora HOM05D004130 ORTHO05D004705 6.8e-08 59.7 40 70.0
FvH4_1g08340 Fragaria vesca HOM05D004130 ORTHO05D004705 8.9e-08 59.3 37 75.7
FAN19G1377 Fragaria x ananassa HOM05D004130 ORTHO05D004705 8.9e-08 59.3 37 75.7
FAN28G0738 Fragaria x ananassa HOM05D004130 ORTHO05D004705 8.9e-08 59.3 37 75.7
Atru.chr7.1674 Acer truncatum HOM05D004130 ORTHO05D004705 1.2e-07 58.9 35 74.3
Ah.12g056050 Amaranthus hybridus HOM05D004130 ORTHO05D004705 2.0e-07 58.2 43 65.1
COL.COLO4_18121 Corchorus olitorius HOM05D004130 ORTHO05D004705 2.0e-07 58.2 40 70.0
MD02G1087600 Malus domestica HOM05D004130 ORTHO05D004705 2.0e-07 58.2 41 68.3
AUR62007416 Chenopodium quinoa HOM05D004130 ORTHO05D004705 2.6e-07 57.8 43 62.8
FAN23G0613 Fragaria x ananassa HOM05D004130 ORTHO05D004705 2.6e-07 57.8 37 73.0
Thecc.09G080000 Theobroma cacao HOM05D004130 ORTHO05D004705 2.6e-07 57.8 41 65.9
Mapoly0146s0043 Marchantia polymorpha HOM05D004130 ORTHO05D004705 3.4e-07 57.4 38 71.1
SMO340G0182 Selaginella moellendorffii HOM05D004130 ORTHO05D004705 3.4e-07 57.4 40 65.0
Rhsim11G0034000 Rhododendron simsii HOM05D004130 ORTHO05D004705 4.4e-07 57.0 33 81.8
Gohir.D07G014100 Gossypium hirsutum HOM05D004130 ORTHO05D004705 4.9e-06 53.5 40 60.0
Gorai.001G014900 Gossypium raimondii HOM05D004130 ORTHO05D004705 4.9e-06 53.5 40 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2271 Anthoceros agrestis HOM05D004130 ORTHO05D004705 6.4e-06 53.1 38 57.9


User provided reference genes

Program Settings