Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.2e-109 399.8 198 100.0
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 8.9e-105 383.6 198 97.0
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-104 383.3 198 96.5
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 2.0e-104 382.5 198 96.5
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.7e-103 379.4 198 94.9
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 3.7e-103 378.3 198 94.4
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 4.6e-101 371.3 198 91.9
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 4.6e-101 371.3 198 91.9
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 2.3e-100 369.0 198 91.4
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 3.3e-99 365.2 198 89.9
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 1.4e-97 359.8 219 83.1
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.8e-97 359.4 198 87.9
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 5.2e-97 357.8 216 83.8
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 8.9e-97 357.1 198 87.4
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 1.2e-96 356.7 198 86.9
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 2.6e-96 355.5 198 85.4
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 1.1e-94 350.1 198 84.8
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.4e-94 349.7 198 87.4
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 4.1e-94 348.2 198 84.8
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 5.1e-84 314.7 198 74.2
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 5.6e-83 311.2 180 84.4
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.1e-81 307.0 198 74.2
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.5e-80 303.1 198 71.7
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 4.4e-80 301.6 198 72.2
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 9.9e-80 300.4 198 72.7
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 71.2
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 2.9e-79 298.9 198 72.7
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 2.4e-78 295.8 198 68.7
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 2.4e-78 295.8 198 71.2
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 70.7
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 69.7
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 5.4e-78 294.7 198 70.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 5.4e-78 294.7 198 70.7
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 70.7
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 70.7
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 71.2
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 70.2
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 70.7
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 69.7
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.7e-77 292.4 198 70.7
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 3.5e-77 292.0 198 68.2
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 3.5e-77 292.0 198 68.2
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 4.6e-77 291.6 198 69.2
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 1.0e-76 290.4 198 67.2
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 69.2
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 69.7
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 70.2
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 3.9e-76 288.5 198 69.2
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 5.1e-76 288.1 199 69.8
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 68.7
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 70.7
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 69.2
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.1e-75 287.0 198 67.7
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.1e-75 287.0 199 67.8
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 68.2
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 4.3e-75 285.0 198 67.2
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 4.3e-75 285.0 198 67.7
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 4.3e-75 285.0 200 69.5
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 3.6e-74 282.0 198 66.7
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 6.2e-74 281.2 198 67.7
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 8.1e-74 280.8 198 66.7
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.1e-73 280.4 198 64.1
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.1e-73 280.4 198 68.2
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.1e-73 280.4 198 68.2
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 1.4e-73 280.0 198 65.7
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.8e-73 279.6 198 66.2
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 65.7
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 3.1e-73 278.9 198 67.7
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 4.0e-73 278.5 198 65.7
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 4.0e-73 278.5 198 65.7
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 9.0e-73 277.3 198 64.6
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.2e-72 276.9 198 65.7
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 3.4e-72 275.4 198 65.2
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 5.8e-72 274.6 200 65.5
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 7.6e-72 274.2 206 65.0
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 7.6e-72 274.2 198 65.7
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 2.2e-71 272.7 198 62.6
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.2e-71 272.7 198 67.2
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.2e-71 272.7 206 64.6
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 2.9e-71 272.3 198 63.6
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 8.4e-71 270.8 198 64.6
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.2e-70 268.9 198 62.6
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 2.7e-69 265.8 216 60.2
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.5e-69 265.4 198 65.2
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 7.9e-69 264.2 234 56.8
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.0e-68 263.8 234 56.4
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.3e-68 263.5 198 61.6
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 3.0e-68 262.3 145 87.6
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 5.1e-68 261.5 198 63.1
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 2.5e-67 259.2 253 54.9
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 7.4e-67 257.7 176 68.2
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 7.4e-67 257.7 241 55.2
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 9.6e-67 257.3 233 55.8
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 2.1e-66 256.1 170 70.6
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 6.2e-66 254.6 198 58.6
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 6.2e-66 254.6 236 53.4
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 1.8e-65 253.1 171 67.8
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.2e-64 250.4 173 67.1
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.1e-62 243.8 198 57.6
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 3.2e-62 242.3 170 64.1
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.6e-61 240.0 198 57.6
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 1.0e-60 237.3 155 69.7
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.3e-60 236.1 188 61.7
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 3.9e-60 235.3 198 57.1
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.6e-58 229.9 198 59.1
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 4.8e-58 228.4 191 57.6
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 4.8e-58 228.4 160 68.1
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 8.2e-58 227.6 198 54.0
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 3.2e-54 215.7 198 55.1
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 1.2e-53 213.8 167 63.5
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 3.5e-53 212.2 198 50.0
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.6e-50 203.4 133 67.7
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 6.3e-50 201.4 198 47.0
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 4.1e-49 198.7 135 68.1
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 8.5e-47 191.0 197 45.7
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 2.7e-45 186.0 196 44.9
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 1.4e-44 183.7 120 67.5
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 4.3e-43 178.7 130 62.3
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 2.2e-42 176.4 115 68.7
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 1.2e-40 170.6 143 57.3
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 2.9e-39 166.0 185 50.3
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.1e-38 164.1 130 60.0
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 9.4e-38 161.0 145 55.9
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 1.2e-37 160.6 160 47.5
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.4e-36 157.1 110 72.7
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 4.4e-35 152.1 142 50.0
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.7e-31 140.2 115 52.2
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.2e-31 139.8 115 52.2
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 2.9e-31 139.4 143 47.6
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 8.5e-31 137.9 87 63.2
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 3.3e-27 125.9 145 42.1
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 2.8e-26 122.9 121 52.9
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 2.0e-24 116.7 82 72.0
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 2.9e-23 112.8 77 76.6
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 1.6e-21 107.1 77 72.7
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 3.6e-21 105.9 77 72.7
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.8e-20 103.6 77 67.5
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 3.0e-20 102.8 77 66.2
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 3.0e-20 102.8 77 66.2
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.2e-19 100.9 77 66.2
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.5e-19 100.5 75 68.0
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 3.4e-19 99.4 60 66.7
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.8e-18 95.5 77 61.0
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.1e-17 94.4 83 57.8
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 5.4e-17 92.0 56 78.6
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 1.2e-16 90.9 56 66.1
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 2.7e-16 89.7 99 45.5
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 5.9e-16 88.6 72 62.5
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 7.7e-16 88.2 56 75.0
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 1.0e-15 87.8 69 66.7
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.9e-15 86.3 75 60.0
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 3.8e-15 85.9 54 70.4
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 2.1e-13 80.1 145 37.2
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 2.1e-13 80.1 61 62.3
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 1.4e-12 77.4 119 37.8
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 3.0e-12 76.3 52 63.5
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 4.0e-12 75.9 64 56.2
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 4.4e-11 72.4 54 50.0
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 2.2e-10 70.1 63 47.6
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 4.1e-09 65.9 55 52.7
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 1.0e-07 61.2 46 63.0
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.9e-07 59.7 53 52.8


User provided reference genes

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