Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 1.8e-73 279.3 150 100.0
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 1.8e-73 279.3 150 100.0
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 1.3e-71 273.1 150 89.3
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 1.3e-71 273.1 150 89.3
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 2.9e-55 218.8 151 75.5
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 7.1e-54 214.2 160 72.5
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 2.4e-46 189.1 141 70.2
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 9.3e-46 187.2 162 63.6
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 9.6e-43 177.2 164 59.8
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 1.8e-41 172.9 160 58.8
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 1.9e-38 162.9 159 59.7
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 2.7e-37 159.1 147 56.5
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 5.3e-25 118.2 142 47.9
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 9.0e-25 117.5 155 45.2
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 8.5e-15 84.3 111 45.0
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 3.2e-14 82.4 138 37.0
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 1.4e-12 77.0 91 47.3
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 5.1e-12 75.1 127 37.8
Gorai.009G012500 Gossypium raimondii HOM05D003969 ORTHO05D003125 6.7e-12 74.7 80 53.8
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 8.8e-12 74.3 73 53.4
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 1.5e-11 73.6 105 41.0
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.5e-11 73.6 128 38.3
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.9e-11 73.2 121 37.2
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 2.5e-11 72.8 138 37.0
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 3.3e-11 72.4 129 38.0
Gohir.D05G012200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.3e-11 72.4 151 37.7
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 7.4e-11 71.2 131 38.2
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.3e-10 70.5 87 47.1
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 3.7e-10 68.9 128 39.1
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 4.8e-10 68.6 89 40.4
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 6.3e-10 68.2 132 36.4
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 8.2e-10 67.8 138 34.1
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 8.2e-10 67.8 139 32.4
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 8.2e-10 67.8 73 50.7
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 8.2e-10 67.8 73 50.7
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.1e-09 67.4 70 50.0
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.1e-09 67.4 134 32.8
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.1e-09 67.4 134 32.8
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 1.4e-09 67.0 132 34.8
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.8e-09 66.6 70 50.0
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 1.8e-09 66.6 123 37.4
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.8e-09 66.6 147 34.0
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 2.4e-09 66.2 73 50.7
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.1e-09 65.5 138 36.2
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 5.3e-09 65.1 138 36.2
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 5.3e-09 65.1 138 36.2
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 1.2e-08 63.9 86 43.0
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 1.2e-08 63.9 136 36.8
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 1.5e-08 63.5 65 55.4
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 2.0e-08 63.2 68 54.4
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.6e-08 62.8 150 33.3
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 2.6e-08 62.8 127 38.6
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.6e-08 62.8 68 51.5
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 3.4e-08 62.4 77 45.5
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.4e-08 62.4 129 34.9
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 4.5e-08 62.0 128 35.2
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 4.5e-08 62.0 139 33.1
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 4.5e-08 62.0 129 34.9
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 5.9e-08 61.6 127 36.2
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 5.9e-08 61.6 127 36.2
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 7.7e-08 61.2 130 33.8
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 7.7e-08 61.2 121 37.2
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 1.0e-07 60.8 138 34.8
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 1.0e-07 60.8 76 46.1
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.3e-07 60.5 125 35.2
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.3e-07 60.5 63 50.8
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.3e-07 60.5 68 47.1
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.7e-07 60.1 145 33.1
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 2.2e-07 59.7 65 50.8
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.2e-07 59.7 75 42.7
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 2.2e-07 59.7 68 50.0
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 2.2e-07 59.7 131 34.4
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 2.9e-07 59.3 169 30.2
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.9e-07 59.3 68 45.6
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 3.8e-07 58.9 110 36.4
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 3.8e-07 58.9 75 49.3
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 3.8e-07 58.9 72 41.7
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 3.8e-07 58.9 129 32.6
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 3.8e-07 58.9 73 46.6
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 6.5e-07 58.2 135 37.0
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 6.5e-07 58.2 70 45.7
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.5e-07 58.2 62 53.2
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.5e-07 58.2 62 53.2
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 6.5e-07 58.2 62 53.2
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 6.5e-07 58.2 136 37.5
Medtr1g012950 Medicago truncatula HOM05D013068 ORTHO05D003125 6.5e-07 58.2 68 45.6
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 6.5e-07 58.2 125 33.6
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 6.5e-07 58.2 62 53.2
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 8.5e-07 57.8 59 49.2
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 8.5e-07 57.8 60 53.3
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 8.5e-07 57.8 137 32.8
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 8.5e-07 57.8 75 45.3
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 8.5e-07 57.8 74 50.0
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 8.5e-07 57.8 86 39.5
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 1.1e-06 57.4 96 38.5
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 1.9e-06 56.6 83 39.8
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 2.5e-06 56.2 135 36.3
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 2.5e-06 56.2 79 45.6
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.5e-06 56.2 78 39.7
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.5e-06 56.2 83 44.6
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 3.2e-06 55.8 63 50.8
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 3.2e-06 55.8 68 47.1
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 4.2e-06 55.5 78 44.9
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 4.2e-06 55.5 122 33.6
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 4.2e-06 55.5 65 52.3
HPP92_020075 Vanilla planifolia HOM05D003969 ORTHO05D003125 4.2e-06 55.5 102 38.2
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 5.5e-06 55.1 65 49.2
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 5.5e-06 55.1 110 35.5
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 5.5e-06 55.1 74 44.6
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 7.2e-06 54.7 125 31.2
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 7.2e-06 54.7 64 45.3
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 9.4e-06 54.3 62 46.8
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 9.4e-06 54.3 68 48.5
PSO384G4887 Papaver somniferum HOM05D000107 ORTHO05D000062 9.4e-06 54.3 63 49.2
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 9.4e-06 54.3 117 33.3
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 9.4e-06 54.3 144 31.9


User provided reference genes

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