Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p09020 Brassica napus HOM05D007324 ORTHO05D007884 1.4e-50 203.0 133 100.0
BraA08t32903Z Brassica rapa HOM05D007324 ORTHO05D007884 1.4e-50 203.0 133 100.0
BolC8t47935H Brassica oleracea HOM05D007324 ORTHO05D007884 8.2e-46 187.2 138 84.1
BcaB04g17953 Brassica carinata HOM05D007324 ORTHO05D007884 2.2e-38 162.5 100 89.0
Thhalv10009848m.g Eutrema salsugineum HOM05D007324 ORTHO05D007884 4.2e-34 148.3 100 80.0
C05p32110 Brassica napus HOM05D007324 ORTHO05D007884 1.3e-27 126.7 134 58.2
BolC5t31940H Brassica oleracea HOM05D007324 ORTHO05D007884 1.3e-27 126.7 134 58.2
BolC5t31929H Brassica oleracea HOM05D007324 ORTHO05D007884 9.4e-26 120.6 100 70.0
C05p32030 Brassica napus HOM05D007324 ORTHO05D007884 4.0e-24 115.2 100 68.0
BcaB07g32955 Brassica carinata HOM05D007324 ORTHO05D007884 6.3e-22 107.8 100 61.0
Sp1g28340 Schrenkiella parvula HOM05D007324 ORTHO05D007884 1.1e-21 107.1 133 56.4
A09p33650 Brassica napus HOM05D007324 ORTHO05D007884 1.2e-17 93.6 100 55.0
Aa31LG2G13400 Aethionema arabicum HOM05D007324 ORTHO05D007884 1.6e-17 93.2 102 56.9
AL1G48030 Arabidopsis lyrata HOM05D007324 ORTHO05D007884 2.8e-17 92.4 100 57.0
arahy.Tifrunner.gnm1.ann1.0E68DR Arachis hypogaea HOM05D007324 ORTHO05D007884 6.8e-16 87.8 93 57.0
arahy.Tifrunner.gnm1.ann1.69TWVD Arachis hypogaea HOM05D007324 ORTHO05D007884 6.8e-16 87.8 93 57.0
PGR042G1904 Punica granatum HOM05D007324 ORTHO05D007884 4.4e-15 85.1 112 50.9
Atru.chr6.1738 Acer truncatum HOM05D007324 ORTHO05D007884 1.7e-14 83.2 100 52.0
Eucgr.E00290 Eucalyptus grandis HOM05D007324 ORTHO05D007884 2.2e-14 82.8 103 55.3
Ah.07g200240 Amaranthus hybridus HOM05D007324 ORTHO05D007884 4.9e-14 81.6 82 62.2
CiPaw.11G092000 Carya illinoinensis HOM05D007324 ORTHO05D007884 6.3e-14 81.3 99 56.6
Actinidia14815 Actinidia chinensis HOM05D007324 ORTHO05D007884 8.3e-14 80.9 99 55.6
Glyma.05G112000 Glycine max HOM05D007324 ORTHO05D007884 1.4e-13 80.1 100 49.0
Glyma.17G155000 Glycine max HOM05D007324 ORTHO05D007884 1.8e-13 79.7 84 54.8
PSO478G0244 Papaver somniferum HOM05D007324 ORTHO05D007884 4.1e-13 78.6 92 54.3
Migut.E01386 Erythranthe guttata HOM05D007324 ORTHO05D007884 5.4e-13 78.2 99 53.5
Solyc06g061110.2 Solanum lycopersicum HOM05D007324 ORTHO05D007884 5.4e-13 78.2 100 53.0
Ciclev10033018m.g Citrus clementina HOM05D007324 ORTHO05D007884 7.0e-13 77.8 100 52.0
Sopen06g021310 Solanum pennellii HOM05D007324 ORTHO05D007884 7.0e-13 77.8 100 53.0
CSS0048146 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 9.2e-13 77.4 108 50.9
PSO782G1330 Papaver somniferum HOM05D007324 ORTHO05D007884 9.2e-13 77.4 92 53.3
TWI81G0167 Tripterygium wilfordii HOM05D007324 ORTHO05D007884 1.6e-12 76.6 102 48.0
Lalb_Chr16g0386011 Lupinus albus HOM05D007324 ORTHO05D007884 2.0e-12 76.3 99 52.5
PSO782G2910 Papaver somniferum HOM05D007324 ORTHO05D007884 2.7e-12 75.9 92 53.3
Medtr4g098480 Medicago truncatula HOM05D007324 ORTHO05D007884 3.5e-12 75.5 101 51.5
Haze_08257 Corylus avellana HOM05D007324 ORTHO05D007884 5.9e-12 74.7 106 50.0
CSS0008196 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 7.8e-12 74.3 108 50.0
Lj2A242T77 Lonicera japonica HOM05D007324 ORTHO05D007884 7.8e-12 74.3 106 51.9
CsaV3_3G001850 Cucumis sativus L. HOM05D007324 ORTHO05D007884 1.3e-11 73.6 91 51.6
Phvul.003G230300 Phaseolus vulgaris HOM05D007324 ORTHO05D007884 2.3e-11 72.8 96 47.9
Oeu047787.1 Olea europaea HOM05D007324 ORTHO05D007884 2.9e-11 72.4 102 47.1
ECA240G0465 Erigeron canadensis HOM05D007324 ORTHO05D007884 6.6e-11 71.2 118 44.9
MELO3C032260.2 Cucumis melo HOM05D007324 ORTHO05D007884 1.1e-10 70.5 103 46.6
CARHR129450 Cardamine hirsuta HOM05D011082 ORTHO05D007884 1.9e-10 69.7 93 51.6
HanXRQChr03g0084061 Helianthus annuus HOM05D007324 ORTHO05D007884 1.9e-10 69.7 92 52.2
Psat4g078840 Pisum sativum HOM05D007324 ORTHO05D007884 4.3e-10 68.6 89 51.7
Manes.15G168800 Manihot esculenta HOM05D007324 ORTHO05D007884 5.6e-10 68.2 74 56.8
Lsat_1_v5_gn_6_78560 Lactuca sativa HOM05D007324 ORTHO05D007884 7.3e-10 67.8 74 55.4
BcaC05g27297 Brassica carinata HOM05D007324 ORTHO05D007884 9.5e-10 67.4 100 48.0
CARHR032010 Cardamine hirsuta HOM05D007324 ORTHO05D007884 1.2e-09 67.0 101 46.5
Gohir.A08G157700 Gossypium hirsutum HOM05D007324 ORTHO05D007884 2.1e-09 66.2 90 45.6
Aa31LG9G15320 Aethionema arabicum HOM05D011082 ORTHO05D007884 2.8e-09 65.9 89 51.7
Gohir.D08G178000 Gossypium hirsutum HOM05D007324 ORTHO05D007884 3.6e-09 65.5 90 44.4
Gorai.004G186200 Gossypium raimondii HOM05D007324 ORTHO05D007884 3.6e-09 65.5 90 44.4
SGA_v2.0_scaffold144G35830 Striga asiatica HOM05D007324 ORTHO05D007884 3.6e-09 65.5 99 45.5
CDE12G0317 Ceratophyllum demersum HOM05D007324 ORTHO05D007884 4.7e-09 65.1 77 51.9
HanXRQChr02g0043531 Helianthus annuus HOM05D007324 ORTHO05D007884 6.1e-09 64.7 99 47.5
Cpa.g.sc18.65 Carica papaya HOM05D007324 ORTHO05D007884 8.0e-09 64.3 86 48.8
ClCG10G001740 Citrullus lanatus HOM05D007324 ORTHO05D007884 8.0e-09 64.3 78 53.8
FvH4_5g21830 Fragaria vesca HOM05D007324 ORTHO05D007884 8.0e-09 64.3 90 51.1
Thhalv10017485m.g Eutrema salsugineum HOM05D011082 ORTHO05D007884 1.0e-08 63.9 93 47.3
FAN04G2965 Fragaria x ananassa HOM05D007324 ORTHO05D007884 1.8e-08 63.2 79 54.4
PGSC0003DMG400002093 Solanum tuberosum HOM05D007324 ORTHO05D007884 1.8e-08 63.2 103 46.6
FAN13G0501 Fragaria x ananassa HOM05D007324 ORTHO05D007884 3.1e-08 62.4 120 42.5
FAN18G2652 Fragaria x ananassa HOM05D007324 ORTHO05D007884 6.8e-08 61.2 79 53.2
TPR.G29033 Trifolium pratense HOM05D007324 ORTHO05D007884 6.8e-08 61.2 79 54.4
COL.COLO4_17062 Corchorus olitorius HOM05D007324 ORTHO05D007884 1.2e-07 60.5 96 43.8
MD06G1032700 Malus domestica HOM05D007324 ORTHO05D007884 2.0e-07 59.7 87 47.1
MBI04_g22943_MAGBIO Magnolia biondii HOM05D007324 ORTHO05D007884 4.4e-07 58.5 99 44.4
FAN08G0008 Fragaria x ananassa HOM05D007324 ORTHO05D007884 7.5e-07 57.8 79 50.6
AL1G46810 Arabidopsis lyrata HOM05D007324 ORTHO05D007884 9.8e-07 57.4 101 41.6
AT2G35300 Arabidopsis thaliana HOM05D011082 ORTHO05D007884 6.4e-06 54.7 93 45.2
Nn6g33613 Nelumbo nucifera HOM05D007324 ORTHO05D007884 6.4e-06 54.7 87 43.7
Potri.003G090501 Populus trichocarpa HOM05D007324 ORTHO05D007884 6.4e-06 54.7 57 59.6
Cc08_g02520 Coffea canephora HOM05D007324 ORTHO05D007884 8.3e-06 54.3 100 47.0


User provided reference genes

Program Settings